Wall clock time and date at job start Mon Mar 23 2020 11:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86298 * 109.47218 * 2 1 4 4 H 1.48500 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47596 * 300.00127 * 3 2 1 6 6 H 1.48509 * 109.46835 * 60.00208 * 3 2 1 7 7 C 1.50696 * 109.47334 * 120.00505 * 2 1 3 8 8 C 1.38898 * 120.03006 * 105.99383 * 7 2 1 9 9 N 1.39671 * 120.06804 * 0.02562 * 8 7 2 10 10 C 1.47012 * 110.99907 * 293.51687 * 9 8 7 11 11 C 1.52970 * 110.22405 * 181.61582 * 10 9 8 12 12 N 1.47671 * 109.29141 * 54.85149 * 11 10 9 13 13 H 1.00895 * 112.00424 * 171.90417 * 12 11 10 14 14 C 1.48197 * 107.77262 * 47.68130 * 12 11 10 15 15 C 1.54053 * 106.71210 * 273.52249 * 14 12 11 16 16 C 1.47916 * 111.00183 * 170.78254 * 9 8 7 17 17 H 1.09003 * 113.05349 * 312.45905 * 16 9 8 18 18 C 1.48787 * 106.87995 * 294.95917 * 12 11 10 19 19 C 1.38913 * 119.86632 * 180.27887 * 8 7 2 20 20 C 1.38196 * 119.90910 * 359.44904 * 19 8 7 21 21 Cl 1.73605 * 119.97419 * 180.29720 * 20 19 8 22 22 C 1.38429 * 120.04959 * 0.27341 * 20 19 8 23 23 C 1.38136 * 120.02217 * 285.71767 * 7 2 1 24 24 H 0.96703 * 114.00472 * 299.99962 * 1 2 3 25 25 H 1.09004 * 109.47514 * 240.00144 * 2 1 3 26 26 H 1.08997 * 109.34312 * 301.84748 * 10 9 8 27 27 H 1.09000 * 109.34584 * 61.39074 * 10 9 8 28 28 H 1.08999 * 109.50085 * 174.79430 * 11 10 9 29 29 H 1.09000 * 109.50708 * 294.90718 * 11 10 9 30 30 H 1.08994 * 110.01556 * 32.84261 * 14 12 11 31 31 H 1.09000 * 110.00598 * 154.21124 * 14 12 11 32 32 H 1.08995 * 110.37913 * 240.17294 * 15 14 12 33 33 H 1.09003 * 110.37665 * 117.81555 * 15 14 12 34 34 H 1.08996 * 110.91916 * 190.12448 * 18 12 11 35 35 H 1.08998 * 110.92225 * 313.73622 * 18 12 11 36 36 H 1.07991 * 120.04494 * 179.71858 * 19 8 7 37 37 H 1.08007 * 119.93028 * 179.97438 * 22 20 19 38 38 H 1.08004 * 119.95779 * 359.97438 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 1 3.5349 1.7564 0.0006 5 1 1.5550 2.4566 -1.2124 6 1 1.5549 2.4564 1.2126 7 6 1.9313 -0.7105 1.2303 8 6 2.4754 -1.9840 1.1241 9 7 2.5583 -2.6079 -0.1228 10 6 1.2198 -2.9065 -0.6524 11 6 1.3319 -3.6246 -1.9984 12 7 2.1795 -4.8238 -1.8425 13 1 2.1757 -5.3997 -2.6709 14 6 1.7116 -5.5555 -0.6418 15 6 2.4447 -4.9405 0.5655 16 6 3.3604 -3.8481 -0.0428 17 1 4.3022 -3.7137 0.4893 18 6 3.5465 -4.3452 -1.5018 19 6 2.9321 -2.6382 2.2613 20 6 2.8542 -2.0155 3.4926 21 17 3.4316 -2.8284 4.9137 22 6 2.3166 -0.7439 3.5935 23 6 1.8562 -0.0933 2.4639 24 1 -0.3934 0.4417 0.7650 25 1 1.7923 -0.5138 -0.8900 26 1 0.6861 -3.5431 0.0531 27 1 0.6679 -1.9759 -0.7847 28 1 0.3391 -3.9222 -2.3359 29 1 1.7806 -2.9549 -2.7321 30 1 0.6347 -5.4329 -0.5263 31 1 1.9596 -6.6133 -0.7295 32 1 3.0427 -5.6978 1.0725 33 1 1.7297 -4.4946 1.2569 34 1 4.2670 -5.1620 -1.5458 35 1 3.8472 -3.5276 -2.1568 36 1 3.3515 -3.6302 2.1827 37 1 2.2562 -0.2592 4.5568 38 1 1.4376 0.8989 2.5460 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381777743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:50:46 Heat of formation + Delta-G solvation = 145.617058 kcal Electronic energy + Delta-G solvation = -21935.543902 eV Core-core repulsion = 18811.348529 eV Total energy + Delta-G solvation = -3124.195372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.13801 -42.51285 -39.28863 -39.21972 -38.14148 -36.05580 -33.67647 -33.45503 -33.05905 -30.19660 -28.39585 -27.15012 -25.32470 -25.12344 -23.75036 -23.18186 -22.37231 -20.33497 -20.30414 -19.53045 -19.04184 -18.65324 -18.07662 -17.84248 -17.56571 -17.30050 -16.84052 -16.60212 -16.39658 -16.11798 -15.98408 -15.81077 -15.61932 -15.37841 -15.00809 -14.96037 -14.75826 -14.61667 -14.43526 -13.94853 -13.86055 -13.41633 -13.15176 -13.06976 -12.83636 -12.36116 -11.79422 -11.12443 -10.60440 -1.48919 -1.35251 -1.25433 -0.08947 0.02553 0.17677 0.32457 0.40339 0.50687 0.53737 0.59366 0.93094 1.01413 1.16080 1.31663 1.36422 1.50871 1.68110 1.76574 1.85934 1.98254 2.14149 2.14725 2.23369 2.25876 2.31698 2.39250 2.46986 2.56003 2.69473 2.73621 2.79335 2.94665 3.00065 3.07943 3.21048 3.54001 3.74326 3.85372 3.92270 4.04621 4.43840 5.21925 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.010269 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.421263 B = 2725.876976 C = 4453.081600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.082 4.082 3 Si 0.940 3.060 4 H -0.247 1.247 5 H -0.244 1.244 6 H -0.246 1.246 7 C -0.111 4.111 8 C 0.115 3.885 9 N -0.479 5.479 10 C 0.008 3.992 11 C 0.000 4.000 12 N -0.398 5.398 13 H 0.437 0.563 14 C -0.006 4.006 15 C -0.184 4.184 16 C 0.059 3.941 17 H 0.154 0.846 18 C 0.005 3.995 19 C -0.156 4.156 20 C -0.010 4.010 21 Cl -0.049 7.049 22 C -0.106 4.106 23 C -0.090 4.090 24 H 0.384 0.616 25 H 0.126 0.874 26 H 0.076 0.924 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 -11.107 -11.170 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.192 4.192 3 Si 0.761 3.239 4 H -0.170 1.170 5 H -0.168 1.168 6 H -0.169 1.169 7 C -0.113 4.113 8 C 0.019 3.981 9 N -0.195 5.195 10 C -0.117 4.117 11 C -0.122 4.122 12 N 0.022 4.978 13 H 0.275 0.725 14 C -0.127 4.127 15 C -0.223 4.223 16 C -0.049 4.049 17 H 0.171 0.829 18 C -0.117 4.117 19 C -0.176 4.176 20 C -0.038 4.038 21 Cl -0.020 7.020 22 C -0.126 4.126 23 C -0.109 4.109 24 H 0.233 0.767 25 H 0.144 0.856 26 H 0.094 0.906 27 H 0.166 0.834 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.237 -10.218 -11.850 15.649 hybrid contribution -0.401 -0.988 0.948 1.427 sum -0.638 -11.207 -10.902 15.648 Atomic orbital electron populations 1.86454 1.16624 1.81590 1.50046 1.24939 0.85237 1.11117 0.97917 0.85758 0.81349 0.74296 0.82516 1.16974 1.16752 1.16940 1.20038 1.01727 0.93489 0.96055 1.18077 1.00132 0.93162 0.86709 1.60096 1.13514 1.22385 1.23549 1.23205 0.90438 1.05038 0.93042 1.24161 0.99017 0.86352 1.02668 1.46416 1.16925 1.16855 1.17615 0.72500 1.24461 1.04558 1.00045 0.83649 1.23721 1.00848 1.00405 0.97290 1.23835 0.99937 0.87567 0.93603 0.82876 1.25077 0.81691 1.05141 0.99784 1.21316 1.05111 1.00801 0.90415 1.20895 0.99896 0.94217 0.88765 1.98455 1.86875 1.78568 1.38054 1.21231 0.97835 0.93135 1.00349 1.21143 0.98137 1.00516 0.91111 0.76722 0.85606 0.90621 0.83409 0.84281 0.84252 0.84940 0.84609 0.86523 0.87110 0.83920 0.83405 0.84118 0.83762 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 8.87 11.74 -35.23 -0.41 8.45 16 2 C -0.08 1.38 1.66 36.00 0.06 1.44 16 3 Si 0.94 -12.77 26.68 -169.99 -4.54 -17.31 16 4 H -0.25 2.90 7.11 56.52 0.40 3.30 16 5 H -0.24 2.77 7.11 56.52 0.40 3.18 16 6 H -0.25 3.16 6.51 56.52 0.37 3.53 16 7 C -0.11 1.81 4.66 -104.42 -0.49 1.32 16 8 C 0.12 -2.10 5.09 -83.79 -0.43 -2.52 16 9 N -0.48 10.76 3.97 -160.23 -0.64 10.12 16 10 C 0.01 -0.19 4.36 -3.78 -0.02 -0.21 16 11 C 0.00 0.01 5.75 -3.42 -0.02 -0.01 16 12 N -0.40 12.43 1.14 -229.09 -0.26 12.17 16 13 H 0.44 -14.87 8.86 -39.29 -0.35 -15.22 16 14 C -0.01 0.17 6.11 -2.56 -0.02 0.16 16 15 C -0.18 4.77 4.46 -25.14 -0.11 4.66 16 16 C 0.06 -1.49 3.18 -64.91 -0.21 -1.70 16 17 H 0.15 -3.70 7.20 -51.93 -0.37 -4.07 16 18 C 0.00 -0.13 6.40 -1.58 -0.01 -0.14 16 19 C -0.16 2.65 7.53 -39.35 -0.30 2.35 16 20 C -0.01 0.14 6.32 -39.53 -0.25 -0.11 16 21 Cl -0.05 0.57 28.95 -51.86 -1.50 -0.93 16 22 C -0.11 1.45 9.83 -39.51 -0.39 1.06 16 23 C -0.09 1.34 8.61 -39.62 -0.34 1.00 16 24 H 0.38 -6.98 8.64 45.56 0.39 -6.58 16 25 H 0.13 -2.35 5.82 -51.93 -0.30 -2.65 16 26 H 0.08 -1.85 5.17 -51.93 -0.27 -2.12 16 27 H 0.15 -3.23 4.55 -51.93 -0.24 -3.46 16 28 H 0.14 -4.17 8.14 -51.93 -0.42 -4.59 16 29 H 0.14 -4.06 7.86 -51.93 -0.41 -4.47 16 30 H 0.13 -3.87 6.99 -51.93 -0.36 -4.23 16 31 H 0.14 -4.11 8.14 -51.93 -0.42 -4.53 16 32 H 0.12 -3.00 8.14 -51.93 -0.42 -3.42 16 33 H 0.11 -2.61 5.40 -51.93 -0.28 -2.89 16 34 H 0.14 -4.35 8.14 -51.93 -0.42 -4.77 16 35 H 0.15 -4.28 7.81 -51.93 -0.41 -4.69 16 36 H 0.14 -2.73 5.04 -52.49 -0.26 -3.00 16 37 H 0.14 -1.99 8.06 -52.48 -0.42 -2.41 16 38 H 0.15 -2.28 6.31 -52.48 -0.33 -2.61 16 LS Contribution 287.44 15.07 4.33 4.33 Total: 1.00 -31.91 287.44 -9.66 -41.57 By element: Atomic # 1 Polarization: -61.58 SS G_CDS: -4.13 Total: -65.71 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -2.51 Total: 7.30 kcal Atomic # 7 Polarization: 23.19 SS G_CDS: -0.90 Total: 22.30 kcal Atomic # 8 Polarization: 8.87 SS G_CDS: -0.41 Total: 8.45 kcal Atomic # 14 Polarization: -12.77 SS G_CDS: -4.54 Total: -17.31 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -1.50 Total: -0.93 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.91 -9.66 -41.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381777743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.187 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds