Wall clock time and date at job start Mon Mar 23 2020 11:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86298 * 109.47218 * 2 1 4 4 H 1.48500 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47596 * 300.00127 * 3 2 1 6 6 H 1.48509 * 109.46835 * 60.00208 * 3 2 1 7 7 C 1.50696 * 109.47334 * 120.00505 * 2 1 3 8 8 C 1.38898 * 120.03006 * 105.99383 * 7 2 1 9 9 N 1.39671 * 120.06804 * 0.02562 * 8 7 2 10 10 C 1.47012 * 110.99907 * 293.51687 * 9 8 7 11 11 C 1.52970 * 110.22405 * 181.61582 * 10 9 8 12 12 N 1.47671 * 109.29141 * 54.85149 * 11 10 9 13 13 H 1.00895 * 112.00424 * 171.90417 * 12 11 10 14 14 C 1.48197 * 107.77262 * 47.68130 * 12 11 10 15 15 C 1.54053 * 106.71210 * 273.52249 * 14 12 11 16 16 C 1.47916 * 111.00183 * 170.78254 * 9 8 7 17 17 H 1.09003 * 113.05349 * 312.45905 * 16 9 8 18 18 C 1.48787 * 106.87995 * 294.95917 * 12 11 10 19 19 C 1.38913 * 119.86632 * 180.27887 * 8 7 2 20 20 C 1.38196 * 119.90910 * 359.44904 * 19 8 7 21 21 Cl 1.73605 * 119.97419 * 180.29720 * 20 19 8 22 22 C 1.38429 * 120.04959 * 0.27341 * 20 19 8 23 23 C 1.38136 * 120.02217 * 285.71767 * 7 2 1 24 24 H 0.96703 * 114.00472 * 299.99962 * 1 2 3 25 25 H 1.09004 * 109.47514 * 240.00144 * 2 1 3 26 26 H 1.08997 * 109.34312 * 301.84748 * 10 9 8 27 27 H 1.09000 * 109.34584 * 61.39074 * 10 9 8 28 28 H 1.08999 * 109.50085 * 174.79430 * 11 10 9 29 29 H 1.09000 * 109.50708 * 294.90718 * 11 10 9 30 30 H 1.08994 * 110.01556 * 32.84261 * 14 12 11 31 31 H 1.09000 * 110.00598 * 154.21124 * 14 12 11 32 32 H 1.08995 * 110.37913 * 240.17294 * 15 14 12 33 33 H 1.09003 * 110.37665 * 117.81555 * 15 14 12 34 34 H 1.08996 * 110.91916 * 190.12448 * 18 12 11 35 35 H 1.08998 * 110.92225 * 313.73622 * 18 12 11 36 36 H 1.07991 * 120.04494 * 179.71858 * 19 8 7 37 37 H 1.08007 * 119.93028 * 179.97438 * 22 20 19 38 38 H 1.08004 * 119.95779 * 359.97438 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 1 3.5349 1.7564 0.0006 5 1 1.5550 2.4566 -1.2124 6 1 1.5549 2.4564 1.2126 7 6 1.9313 -0.7105 1.2303 8 6 2.4754 -1.9840 1.1241 9 7 2.5583 -2.6079 -0.1228 10 6 1.2198 -2.9065 -0.6524 11 6 1.3319 -3.6246 -1.9984 12 7 2.1795 -4.8238 -1.8425 13 1 2.1757 -5.3997 -2.6709 14 6 1.7116 -5.5555 -0.6418 15 6 2.4447 -4.9405 0.5655 16 6 3.3604 -3.8481 -0.0428 17 1 4.3022 -3.7137 0.4893 18 6 3.5465 -4.3452 -1.5018 19 6 2.9321 -2.6382 2.2613 20 6 2.8542 -2.0155 3.4926 21 17 3.4316 -2.8284 4.9137 22 6 2.3166 -0.7439 3.5935 23 6 1.8562 -0.0933 2.4639 24 1 -0.3934 0.4417 0.7650 25 1 1.7923 -0.5138 -0.8900 26 1 0.6861 -3.5431 0.0531 27 1 0.6679 -1.9759 -0.7847 28 1 0.3391 -3.9222 -2.3359 29 1 1.7806 -2.9549 -2.7321 30 1 0.6347 -5.4329 -0.5263 31 1 1.9596 -6.6133 -0.7295 32 1 3.0427 -5.6978 1.0725 33 1 1.7297 -4.4946 1.2569 34 1 4.2670 -5.1620 -1.5458 35 1 3.8472 -3.5276 -2.1568 36 1 3.3515 -3.6302 2.1827 37 1 2.2562 -0.2592 4.5568 38 1 1.4376 0.8989 2.5460 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381777743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:50:46 Heat of formation + Delta-G solvation = 123.798145 kcal Electronic energy + Delta-G solvation = -21936.490041 eV Core-core repulsion = 18811.348529 eV Total energy + Delta-G solvation = -3125.141511 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.98279 -41.03053 -38.10392 -37.64735 -36.81648 -34.01317 -32.31934 -31.59738 -31.08152 -28.37666 -26.88265 -25.25553 -23.69832 -23.04373 -22.36804 -21.18376 -20.10853 -18.81780 -18.23568 -17.90800 -17.41681 -17.02311 -16.40022 -16.14251 -15.88539 -15.67383 -15.20586 -15.14389 -14.86072 -14.55896 -14.27172 -13.94428 -13.83796 -13.55476 -13.30518 -13.07131 -12.82112 -12.81132 -12.57907 -12.53625 -12.28015 -12.18077 -12.08604 -11.94561 -11.69150 -10.83862 -10.57407 -9.86809 -9.17941 -0.14328 0.03803 0.92956 1.02662 1.15911 1.37389 1.49131 1.91450 2.15157 2.38394 2.55892 2.71404 2.89439 3.21736 3.44072 3.45222 3.54879 3.62359 3.62971 3.76976 3.93540 3.95074 4.02775 4.08114 4.17222 4.23786 4.34158 4.41731 4.47478 4.53142 4.57630 4.65703 4.74201 4.75404 4.83088 4.85768 4.94099 5.09672 5.16885 5.28039 5.59123 5.84249 6.57169 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.010269 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.421263 B = 2725.876976 C = 4453.081600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.047 4.047 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.122 4.122 8 C 0.137 3.863 9 N -0.481 5.481 10 C 0.000 4.000 11 C 0.010 3.990 12 N -0.375 5.375 13 H 0.458 0.542 14 C 0.003 3.997 15 C -0.187 4.187 16 C 0.044 3.956 17 H 0.138 0.862 18 C 0.018 3.982 19 C -0.154 4.154 20 C -0.025 4.025 21 Cl -0.076 7.076 22 C -0.135 4.135 23 C -0.100 4.100 24 H 0.391 0.609 25 H 0.151 0.849 26 H 0.076 0.924 27 H 0.125 0.875 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.136 0.864 31 H 0.154 0.846 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.133 0.867 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -13.713 -14.111 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.160 4.160 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.124 4.124 8 C 0.039 3.961 9 N -0.197 5.197 10 C -0.124 4.124 11 C -0.112 4.112 12 N 0.042 4.958 13 H 0.301 0.699 14 C -0.118 4.118 15 C -0.226 4.226 16 C -0.063 4.063 17 H 0.156 0.844 18 C -0.104 4.104 19 C -0.175 4.175 20 C -0.053 4.053 21 Cl -0.048 7.048 22 C -0.155 4.155 23 C -0.119 4.119 24 H 0.241 0.759 25 H 0.168 0.832 26 H 0.094 0.906 27 H 0.143 0.857 28 H 0.177 0.823 29 H 0.168 0.832 30 H 0.154 0.846 31 H 0.172 0.828 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.182 0.818 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.151 0.849 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.537 -12.833 -14.818 19.610 hybrid contribution -0.288 -0.116 1.826 1.853 sum -0.825 -12.949 -12.992 18.362 Atomic orbital electron populations 1.86446 1.16446 1.81491 1.50630 1.24520 0.85116 1.07587 0.98786 0.85740 0.79459 0.77234 0.80229 1.19695 1.19766 1.18553 1.20117 1.02392 0.94455 0.95473 1.18225 0.97134 0.92447 0.88266 1.60122 1.15012 1.24068 1.20506 1.23220 0.88770 1.04743 0.95677 1.24045 1.00696 0.86930 0.99557 1.46152 1.15444 1.16210 1.18023 0.69873 1.24348 1.04221 1.00656 0.82588 1.23625 1.00379 1.00070 0.98553 1.23938 0.98937 0.86542 0.96920 0.84411 1.24976 0.82870 1.05982 0.96540 1.21564 1.04775 1.01553 0.89558 1.21060 1.01026 0.94351 0.88831 1.98432 1.87339 1.79027 1.39963 1.21210 0.99926 0.93885 1.00438 1.21209 0.98446 1.00678 0.91573 0.75908 0.83150 0.90585 0.85723 0.82305 0.83210 0.84623 0.82794 0.86792 0.89741 0.81828 0.82963 0.82039 0.84910 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 17.01 11.74 -148.98 -1.75 15.26 16 2 C -0.05 1.51 1.66 71.23 0.12 1.62 16 3 Si 0.95 -22.45 26.68 68.60 1.83 -20.62 16 4 H -0.27 5.32 7.11 99.48 0.71 6.02 16 5 H -0.27 5.20 7.11 99.48 0.71 5.90 16 6 H -0.26 5.62 6.51 99.48 0.65 6.26 16 7 C -0.12 3.67 4.66 -19.73 -0.09 3.58 16 8 C 0.14 -4.70 5.09 38.21 0.19 -4.51 16 9 N -0.48 21.29 3.97 -660.84 -2.63 18.67 16 10 C 0.00 -0.02 4.36 86.27 0.38 0.35 16 11 C 0.01 -0.59 5.75 86.15 0.50 -0.10 16 12 N -0.37 24.29 1.14 -878.70 -1.00 23.28 16 13 H 0.46 -32.73 8.86 -89.70 -0.79 -33.52 16 14 C 0.00 -0.21 6.11 86.41 0.53 0.32 16 15 C -0.19 9.65 4.46 31.63 0.14 9.79 16 16 C 0.04 -2.24 3.18 46.17 0.15 -2.09 16 17 H 0.14 -6.49 7.20 -2.39 -0.02 -6.51 16 18 C 0.02 -1.09 6.40 86.71 0.56 -0.53 16 19 C -0.15 4.81 7.53 22.42 0.17 4.98 16 20 C -0.03 0.61 6.32 22.31 0.14 0.75 16 21 Cl -0.08 1.50 28.95 -2.72 -0.08 1.42 16 22 C -0.14 3.08 9.83 22.32 0.22 3.30 16 23 C -0.10 2.60 8.61 22.25 0.19 2.79 16 24 H 0.39 -13.41 8.64 -74.06 -0.64 -14.05 16 25 H 0.15 -5.54 5.82 -2.39 -0.01 -5.56 16 26 H 0.08 -3.68 5.17 -2.39 -0.01 -3.69 16 27 H 0.12 -5.41 4.55 -2.39 -0.01 -5.42 16 28 H 0.16 -9.94 8.14 -2.39 -0.02 -9.96 16 29 H 0.15 -9.09 7.86 -2.39 -0.02 -9.11 16 30 H 0.14 -8.11 6.99 -2.39 -0.02 -8.13 16 31 H 0.15 -9.68 8.14 -2.39 -0.02 -9.70 16 32 H 0.11 -5.78 8.14 -2.39 -0.02 -5.79 16 33 H 0.08 -3.84 5.40 -2.39 -0.01 -3.86 16 34 H 0.16 -10.37 8.14 -2.39 -0.02 -10.39 16 35 H 0.15 -9.12 7.81 -2.39 -0.02 -9.14 16 36 H 0.16 -5.90 5.04 -2.92 -0.01 -5.91 16 37 H 0.13 -2.92 8.06 -2.91 -0.02 -2.94 16 38 H 0.14 -3.91 6.31 -2.91 -0.02 -3.93 16 Total: 1.00 -71.07 287.44 -0.07 -71.14 By element: Atomic # 1 Polarization: -129.78 SS G_CDS: 0.37 Total: -129.41 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 3.18 Total: 20.26 kcal Atomic # 7 Polarization: 45.58 SS G_CDS: -3.63 Total: 41.95 kcal Atomic # 8 Polarization: 17.01 SS G_CDS: -1.75 Total: 15.26 kcal Atomic # 14 Polarization: -22.45 SS G_CDS: 1.83 Total: -20.62 kcal Atomic # 17 Polarization: 1.50 SS G_CDS: -0.08 Total: 1.42 kcal Total: -71.07 -0.07 -71.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381777743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.939 kcal (2) G-P(sol) polarization free energy of solvation -71.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds