Wall clock time and date at job start Mon Mar 23 2020 11:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 H 1.00899 * 109.47076 * 2 1 4 4 C 1.46905 * 109.46863 * 240.00683 * 2 1 3 5 5 C 1.53000 * 109.47321 * 88.02333 * 4 2 1 6 6 C 1.54996 * 113.19864 * 66.15647 * 5 4 2 7 7 C 1.54060 * 104.75886 * 146.47846 * 6 5 4 8 8 N 1.48230 * 106.70035 * 1.00362 * 7 6 5 9 9 C 1.48802 * 105.17934 * 332.52359 * 8 7 6 10 10 C 1.47677 * 108.91362 * 88.17603 * 8 7 6 11 11 C 1.52992 * 109.28255 * 312.91900 * 10 8 7 12 12 C 1.54009 * 113.03055 * 304.22216 * 5 4 2 13 13 C 1.46893 * 109.47221 * 120.00417 * 2 1 3 14 14 C 1.53001 * 109.47020 * 66.44234 * 13 2 1 15 15 O 1.42899 * 109.47314 * 293.67600 * 14 13 2 16 16 Si 1.86302 * 109.47063 * 173.68009 * 14 13 2 17 17 H 1.48495 * 109.47222 * 179.97438 * 16 14 13 18 18 H 1.48498 * 109.47068 * 299.99950 * 16 14 13 19 19 H 1.48499 * 109.47302 * 59.99989 * 16 14 13 20 20 C 1.53000 * 109.47428 * 306.44172 * 13 2 1 21 21 C 1.53007 * 109.46942 * 300.00333 * 20 13 2 22 22 C 1.53001 * 109.46496 * 299.99526 * 21 20 13 23 23 C 1.53000 * 109.47138 * 60.00594 * 22 21 20 24 24 C 1.52995 * 109.46775 * 299.99403 * 23 22 21 25 25 H 1.09004 * 109.47286 * 287.37711 * 1 2 3 26 26 H 1.08998 * 109.47485 * 47.37448 * 1 2 3 27 27 H 1.09004 * 109.47593 * 167.37413 * 1 2 3 28 28 H 1.08999 * 109.46506 * 208.02650 * 4 2 1 29 29 H 1.09007 * 109.46983 * 328.01834 * 4 2 1 30 30 H 1.09002 * 110.37579 * 265.29280 * 6 5 4 31 31 H 1.09000 * 110.37974 * 27.65171 * 6 5 4 32 32 H 1.08997 * 110.01286 * 120.32543 * 7 6 5 33 33 H 1.09006 * 110.00529 * 241.65068 * 7 6 5 34 34 H 1.09002 * 110.93140 * 284.55735 * 9 8 7 35 35 H 1.09003 * 110.93429 * 160.89639 * 9 8 7 36 36 H 1.09005 * 109.50259 * 72.85796 * 10 8 7 37 37 H 1.08997 * 109.50480 * 192.93461 * 10 8 7 38 38 H 1.09004 * 109.36859 * 64.96986 * 11 10 8 39 39 H 1.08998 * 109.36970 * 184.71734 * 11 10 8 40 40 H 1.08997 * 109.63405 * 291.83317 * 12 5 4 41 41 H 1.08994 * 109.63420 * 52.43367 * 12 5 4 42 42 H 1.08997 * 109.47677 * 53.67995 * 14 13 2 43 43 H 0.96698 * 114.00089 * 180.02562 * 15 14 13 44 44 H 1.09006 * 109.46856 * 59.99571 * 20 13 2 45 45 H 1.08993 * 109.47671 * 179.97438 * 20 13 2 46 46 H 1.08998 * 109.46816 * 179.97438 * 21 20 13 47 47 H 1.08994 * 109.47115 * 59.99657 * 21 20 13 48 48 H 1.08994 * 109.47545 * 299.99868 * 22 21 20 49 49 H 1.09004 * 109.46284 * 180.02562 * 22 21 20 50 50 H 1.09006 * 109.46856 * 179.97438 * 23 22 21 51 51 H 1.08992 * 109.47010 * 59.99413 * 23 22 21 52 52 H 1.09004 * 109.47106 * 300.00112 * 24 23 22 53 53 H 1.09007 * 109.46810 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6924 -1.1996 5 6 2.0817 0.3075 -2.3511 6 6 3.1714 1.3834 -2.1116 7 6 3.7398 1.6846 -3.5115 8 7 2.9859 0.8400 -4.4682 9 6 2.5480 -0.3445 -3.6810 10 6 1.7796 1.5714 -4.9051 11 6 1.0747 2.1598 -3.6813 12 6 0.7668 1.0538 -2.6442 13 6 1.9587 -0.6925 1.1993 14 6 1.5851 -2.1742 1.1209 15 8 0.1645 -2.3117 1.1913 16 14 2.3685 -3.0882 2.5427 17 1 2.0055 -4.5261 2.4670 18 1 3.8448 -2.9454 2.4697 19 1 1.8793 -2.5216 3.8252 20 6 1.3209 -0.0710 2.4434 21 6 1.6944 1.4108 2.5218 22 6 3.2158 1.5493 2.6053 23 6 3.8536 0.9277 1.3612 24 6 3.4800 -0.5539 1.2829 25 1 -0.3634 0.3069 0.9808 26 1 -0.3634 0.6959 -0.7561 27 1 -0.3634 -1.0028 -0.2246 28 1 2.9350 -1.1307 -0.9929 29 1 1.2578 -1.4803 -1.4758 30 1 2.7296 2.2815 -1.6800 31 1 3.9534 0.9932 -1.4602 32 1 3.5989 2.7383 -3.7525 33 1 4.7999 1.4330 -3.5456 34 1 3.3801 -1.0272 -3.5094 35 1 1.7217 -0.8562 -4.1746 36 1 2.0672 2.3765 -5.5814 37 1 1.1055 0.8870 -5.4200 38 1 1.7179 2.9085 -3.2189 39 1 0.1408 2.6280 -3.9925 40 1 0.0333 0.3575 -3.0507 41 1 0.3847 1.4974 -1.7248 42 1 1.9442 -2.5902 0.1796 43 1 -0.1448 -3.2268 1.1476 44 1 0.2369 -0.1697 2.3838 45 1 1.6838 -0.5851 3.3333 46 1 1.2396 1.8537 3.4078 47 1 1.3310 1.9246 1.6319 48 1 3.5792 1.0354 3.4952 49 1 3.4819 2.6049 2.6616 50 1 4.9375 1.0268 1.4206 51 1 3.4902 1.4416 0.4714 52 1 3.8434 -1.0678 2.1728 53 1 3.9348 -0.9969 0.3968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692190710.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:24 Heat of formation + Delta-G solvation = 104.516884 kcal Electronic energy + Delta-G solvation = -28987.647601 eV Core-core repulsion = 25672.922491 eV Total energy + Delta-G solvation = -3314.725109 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.241 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.07577 -43.26562 -39.71580 -39.53139 -35.65580 -35.03994 -34.42030 -33.60835 -32.24648 -30.71069 -29.00898 -28.17374 -27.00252 -25.69824 -25.34639 -24.30512 -23.04831 -22.91968 -22.02203 -21.26981 -20.29380 -19.75028 -19.29545 -18.84728 -18.62722 -18.08075 -17.76268 -17.29234 -17.08975 -17.04135 -16.83957 -16.49429 -16.41398 -16.09136 -15.79570 -15.55589 -15.41791 -15.38674 -15.30973 -15.25057 -14.85384 -14.81820 -14.73255 -14.51701 -14.31746 -14.17254 -13.80077 -13.68367 -13.63761 -13.34143 -13.21587 -13.19224 -13.10413 -13.08423 -13.01616 -12.95846 -12.36956 -10.92180 -1.33995 -0.61064 -0.10269 -0.06518 0.41436 0.49530 0.63414 0.73992 1.03308 1.17685 1.26674 1.40339 1.56774 1.62470 1.73229 1.86989 1.94889 1.99715 2.06422 2.10815 2.12771 2.18030 2.23859 2.31452 2.33320 2.39137 2.40960 2.46065 2.51889 2.55564 2.60978 2.74863 2.84149 2.84718 2.87588 2.93313 2.97214 2.99098 3.01753 3.12532 3.17912 3.26647 3.28798 3.35098 3.39450 3.50046 3.52075 3.56636 3.60501 3.63702 3.70601 3.83889 4.40116 4.54930 4.55310 Molecular weight = 297.24amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.006501 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.232042 B = 4305.665548 C = 4640.642714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.373 5.373 3 H 0.416 0.584 4 C 0.007 3.993 5 C -0.130 4.130 6 C -0.159 4.159 7 C 0.031 3.969 8 N -0.487 5.487 9 C 0.050 3.950 10 C 0.029 3.971 11 C -0.158 4.158 12 C -0.127 4.127 13 C 0.076 3.924 14 C -0.141 4.141 15 O -0.546 6.546 16 Si 0.947 3.053 17 H -0.238 1.238 18 H -0.238 1.238 19 H -0.234 1.234 20 C -0.146 4.146 21 C -0.135 4.135 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.155 4.155 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.143 0.857 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.401 0.599 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.056 0.944 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.060 0.940 52 H 0.116 0.884 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 -1.159 2.780 3.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 N 0.047 4.953 3 H 0.256 0.744 4 C -0.114 4.114 5 C -0.132 4.132 6 C -0.198 4.198 7 C -0.098 4.098 8 N -0.206 5.206 9 C -0.079 4.079 10 C -0.100 4.100 11 C -0.196 4.196 12 C -0.164 4.164 13 C -0.007 4.007 14 C -0.251 4.251 15 O -0.356 6.356 16 Si 0.765 3.235 17 H -0.161 1.161 18 H -0.161 1.161 19 H -0.157 1.157 20 C -0.183 4.183 21 C -0.172 4.172 22 C -0.171 4.171 23 C -0.170 4.170 24 C -0.192 4.192 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.161 0.839 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.253 0.747 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.113 0.887 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.116 0.884 51 H 0.078 0.922 52 H 0.134 0.866 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.653 -1.351 2.960 3.650 hybrid contribution -0.751 0.252 0.276 0.839 sum -2.405 -1.098 3.236 4.178 Atomic orbital electron populations 1.24843 0.75703 1.11054 1.09577 1.45659 1.16770 1.18514 1.14354 0.74438 1.23842 1.06098 0.98306 0.83202 1.23043 0.98326 0.95738 0.96092 1.23330 0.97424 0.98044 1.00969 1.23088 0.99815 0.98936 0.87922 1.66375 1.17709 1.05292 1.31213 1.23570 1.01161 0.94767 0.88436 1.22699 0.91438 0.99331 0.96518 1.22534 1.02590 0.97871 0.96637 1.22602 0.95252 0.98669 0.99879 1.22768 0.98426 0.93361 0.86189 1.26400 0.89213 0.96794 1.12678 1.86365 1.17516 1.34609 1.97118 0.85655 0.80300 0.80718 0.76826 1.16086 1.16128 1.15661 1.22351 1.03271 0.97207 0.95439 1.21775 0.97365 0.94293 1.03813 1.21715 0.94024 1.02989 0.98398 1.21785 1.04058 0.92582 0.98615 1.22444 0.89127 1.00615 1.06977 0.85526 0.85948 0.83898 0.84958 0.84613 0.90399 0.90183 0.89927 0.89092 0.88820 0.88980 0.89242 0.89856 0.90786 0.90116 0.89796 0.91434 0.89015 0.74704 0.87463 0.87141 0.88658 0.92564 0.90004 0.89818 0.88380 0.92193 0.86628 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 1.84 7.24 60.06 0.43 2.27 16 2 N -0.37 9.74 0.09 -227.16 -0.02 9.72 16 3 H 0.42 -11.02 3.33 -39.29 -0.13 -11.15 16 4 C 0.01 -0.19 2.89 -3.82 -0.01 -0.20 16 5 C -0.13 2.94 0.76 -151.72 -0.12 2.83 16 6 C -0.16 3.38 3.85 -25.12 -0.10 3.29 16 7 C 0.03 -0.53 6.20 -2.54 -0.02 -0.54 16 8 N -0.49 7.63 6.06 -229.00 -1.39 6.24 16 9 C 0.05 -0.96 5.94 -1.56 -0.01 -0.97 16 10 C 0.03 -0.45 5.86 -3.40 -0.02 -0.47 16 11 C -0.16 2.86 5.53 -25.83 -0.14 2.71 16 12 C -0.13 2.75 4.03 -25.30 -0.10 2.65 16 13 C 0.08 -1.85 0.00 -131.61 0.00 -1.85 16 14 C -0.14 3.37 1.69 37.16 0.06 3.43 16 15 O -0.55 12.98 8.76 -35.23 -0.31 12.67 16 16 Si 0.95 -18.51 24.44 -169.99 -4.15 -22.67 16 17 H -0.24 4.02 7.11 56.52 0.40 4.42 16 18 H -0.24 4.44 6.39 56.52 0.36 4.80 16 19 H -0.23 4.12 6.43 56.52 0.36 4.48 16 20 C -0.15 3.29 3.63 -26.73 -0.10 3.19 16 21 C -0.14 2.95 5.61 -26.73 -0.15 2.80 16 22 C -0.13 2.78 5.92 -26.73 -0.16 2.62 16 23 C -0.13 2.98 5.65 -26.73 -0.15 2.83 16 24 C -0.15 3.62 3.92 -26.74 -0.10 3.51 16 25 H 0.13 -3.21 5.31 -51.93 -0.28 -3.49 16 26 H 0.12 -3.19 4.68 -51.93 -0.24 -3.43 16 27 H 0.14 -3.69 5.45 -51.93 -0.28 -3.97 16 28 H 0.13 -3.53 5.33 -51.93 -0.28 -3.80 16 29 H 0.14 -3.64 7.01 -51.93 -0.36 -4.01 16 30 H 0.08 -1.69 6.88 -51.93 -0.36 -2.05 16 31 H 0.08 -1.79 6.98 -51.93 -0.36 -2.15 16 32 H 0.08 -1.33 6.94 -51.93 -0.36 -1.69 16 33 H 0.09 -1.46 8.14 -51.93 -0.42 -1.89 16 34 H 0.09 -1.79 8.14 -51.93 -0.42 -2.22 16 35 H 0.09 -1.73 7.74 -51.93 -0.40 -2.13 16 36 H 0.09 -1.27 8.14 -51.93 -0.42 -1.69 16 37 H 0.08 -1.28 7.87 -51.93 -0.41 -1.69 16 38 H 0.07 -1.32 5.37 -51.93 -0.28 -1.60 16 39 H 0.08 -1.37 8.14 -51.93 -0.42 -1.80 16 40 H 0.08 -1.79 8.11 -51.93 -0.42 -2.21 16 41 H 0.07 -1.60 4.93 -51.93 -0.26 -1.86 16 42 H 0.09 -2.39 6.11 -51.93 -0.32 -2.71 16 43 H 0.40 -10.16 8.74 45.56 0.40 -9.76 16 44 H 0.11 -2.45 5.36 -51.93 -0.28 -2.73 16 45 H 0.11 -2.34 5.89 -51.93 -0.31 -2.65 16 46 H 0.09 -1.92 8.14 -51.93 -0.42 -2.35 16 47 H 0.06 -1.31 6.66 -51.93 -0.35 -1.66 16 48 H 0.08 -1.60 8.14 -51.93 -0.42 -2.03 16 49 H 0.08 -1.62 8.14 -51.93 -0.42 -2.05 16 50 H 0.10 -2.06 8.14 -51.93 -0.42 -2.49 16 51 H 0.06 -1.43 4.58 -51.93 -0.24 -1.67 16 52 H 0.12 -2.57 5.30 -51.93 -0.28 -2.84 16 53 H 0.10 -2.39 6.16 -51.92 -0.32 -2.71 16 LS Contribution 327.86 15.07 4.94 4.94 Total: 1.00 -25.75 327.86 -9.96 -35.72 By element: Atomic # 1 Polarization: -66.38 SS G_CDS: -8.36 Total: -74.74 kcal Atomic # 6 Polarization: 28.79 SS G_CDS: -0.68 Total: 28.12 kcal Atomic # 7 Polarization: 17.37 SS G_CDS: -1.41 Total: 15.96 kcal Atomic # 8 Polarization: 12.98 SS G_CDS: -0.31 Total: 12.67 kcal Atomic # 14 Polarization: -18.51 SS G_CDS: -4.15 Total: -22.67 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -25.75 -9.96 -35.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692190710.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.233 kcal (2) G-P(sol) polarization free energy of solvation -25.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds