Wall clock time and date at job start Mon Mar 23 2020 11:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 H 1.00899 * 109.47076 * 2 1 4 4 C 1.46905 * 109.46863 * 240.00683 * 2 1 3 5 5 C 1.53000 * 109.47321 * 88.02333 * 4 2 1 6 6 C 1.54996 * 113.19864 * 66.15647 * 5 4 2 7 7 C 1.54060 * 104.75886 * 146.47846 * 6 5 4 8 8 N 1.48230 * 106.70035 * 1.00362 * 7 6 5 9 9 C 1.48802 * 105.17934 * 332.52359 * 8 7 6 10 10 C 1.47677 * 108.91362 * 88.17603 * 8 7 6 11 11 C 1.52992 * 109.28255 * 312.91900 * 10 8 7 12 12 C 1.54009 * 113.03055 * 304.22216 * 5 4 2 13 13 C 1.46893 * 109.47221 * 120.00417 * 2 1 3 14 14 C 1.53001 * 109.47020 * 66.44234 * 13 2 1 15 15 O 1.42899 * 109.47314 * 293.67600 * 14 13 2 16 16 Si 1.86302 * 109.47063 * 173.68009 * 14 13 2 17 17 H 1.48495 * 109.47222 * 179.97438 * 16 14 13 18 18 H 1.48498 * 109.47068 * 299.99950 * 16 14 13 19 19 H 1.48499 * 109.47302 * 59.99989 * 16 14 13 20 20 C 1.53000 * 109.47428 * 306.44172 * 13 2 1 21 21 C 1.53007 * 109.46942 * 300.00333 * 20 13 2 22 22 C 1.53001 * 109.46496 * 299.99526 * 21 20 13 23 23 C 1.53000 * 109.47138 * 60.00594 * 22 21 20 24 24 C 1.52995 * 109.46775 * 299.99403 * 23 22 21 25 25 H 1.09004 * 109.47286 * 287.37711 * 1 2 3 26 26 H 1.08998 * 109.47485 * 47.37448 * 1 2 3 27 27 H 1.09004 * 109.47593 * 167.37413 * 1 2 3 28 28 H 1.08999 * 109.46506 * 208.02650 * 4 2 1 29 29 H 1.09007 * 109.46983 * 328.01834 * 4 2 1 30 30 H 1.09002 * 110.37579 * 265.29280 * 6 5 4 31 31 H 1.09000 * 110.37974 * 27.65171 * 6 5 4 32 32 H 1.08997 * 110.01286 * 120.32543 * 7 6 5 33 33 H 1.09006 * 110.00529 * 241.65068 * 7 6 5 34 34 H 1.09002 * 110.93140 * 284.55735 * 9 8 7 35 35 H 1.09003 * 110.93429 * 160.89639 * 9 8 7 36 36 H 1.09005 * 109.50259 * 72.85796 * 10 8 7 37 37 H 1.08997 * 109.50480 * 192.93461 * 10 8 7 38 38 H 1.09004 * 109.36859 * 64.96986 * 11 10 8 39 39 H 1.08998 * 109.36970 * 184.71734 * 11 10 8 40 40 H 1.08997 * 109.63405 * 291.83317 * 12 5 4 41 41 H 1.08994 * 109.63420 * 52.43367 * 12 5 4 42 42 H 1.08997 * 109.47677 * 53.67995 * 14 13 2 43 43 H 0.96698 * 114.00089 * 180.02562 * 15 14 13 44 44 H 1.09006 * 109.46856 * 59.99571 * 20 13 2 45 45 H 1.08993 * 109.47671 * 179.97438 * 20 13 2 46 46 H 1.08998 * 109.46816 * 179.97438 * 21 20 13 47 47 H 1.08994 * 109.47115 * 59.99657 * 21 20 13 48 48 H 1.08994 * 109.47545 * 299.99868 * 22 21 20 49 49 H 1.09004 * 109.46284 * 180.02562 * 22 21 20 50 50 H 1.09006 * 109.46856 * 179.97438 * 23 22 21 51 51 H 1.08992 * 109.47010 * 59.99413 * 23 22 21 52 52 H 1.09004 * 109.47106 * 300.00112 * 24 23 22 53 53 H 1.09007 * 109.46810 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6924 -1.1996 5 6 2.0817 0.3075 -2.3511 6 6 3.1714 1.3834 -2.1116 7 6 3.7398 1.6846 -3.5115 8 7 2.9859 0.8400 -4.4682 9 6 2.5480 -0.3445 -3.6810 10 6 1.7796 1.5714 -4.9051 11 6 1.0747 2.1598 -3.6813 12 6 0.7668 1.0538 -2.6442 13 6 1.9587 -0.6925 1.1993 14 6 1.5851 -2.1742 1.1209 15 8 0.1645 -2.3117 1.1913 16 14 2.3685 -3.0882 2.5427 17 1 2.0055 -4.5261 2.4670 18 1 3.8448 -2.9454 2.4697 19 1 1.8793 -2.5216 3.8252 20 6 1.3209 -0.0710 2.4434 21 6 1.6944 1.4108 2.5218 22 6 3.2158 1.5493 2.6053 23 6 3.8536 0.9277 1.3612 24 6 3.4800 -0.5539 1.2829 25 1 -0.3634 0.3069 0.9808 26 1 -0.3634 0.6959 -0.7561 27 1 -0.3634 -1.0028 -0.2246 28 1 2.9350 -1.1307 -0.9929 29 1 1.2578 -1.4803 -1.4758 30 1 2.7296 2.2815 -1.6800 31 1 3.9534 0.9932 -1.4602 32 1 3.5989 2.7383 -3.7525 33 1 4.7999 1.4330 -3.5456 34 1 3.3801 -1.0272 -3.5094 35 1 1.7217 -0.8562 -4.1746 36 1 2.0672 2.3765 -5.5814 37 1 1.1055 0.8870 -5.4200 38 1 1.7179 2.9085 -3.2189 39 1 0.1408 2.6280 -3.9925 40 1 0.0333 0.3575 -3.0507 41 1 0.3847 1.4974 -1.7248 42 1 1.9442 -2.5902 0.1796 43 1 -0.1448 -3.2268 1.1476 44 1 0.2369 -0.1697 2.3838 45 1 1.6838 -0.5851 3.3333 46 1 1.2396 1.8537 3.4078 47 1 1.3310 1.9246 1.6319 48 1 3.5792 1.0354 3.4952 49 1 3.4819 2.6049 2.6616 50 1 4.9375 1.0268 1.4206 51 1 3.4902 1.4416 0.4714 52 1 3.8434 -1.0678 2.1728 53 1 3.9348 -0.9969 0.3968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692190710.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:24 Heat of formation + Delta-G solvation = 88.258810 kcal Electronic energy + Delta-G solvation = -28988.352604 eV Core-core repulsion = 25672.922491 eV Total energy + Delta-G solvation = -3315.430112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.241 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.15602 -41.67121 -37.88190 -37.63902 -33.95863 -33.34031 -32.73179 -31.82835 -30.62675 -28.80909 -27.11202 -26.31754 -25.40044 -23.94694 -23.70922 -22.50343 -21.41897 -21.17410 -20.33614 -19.32013 -18.39542 -17.82193 -17.30263 -17.26622 -16.84888 -16.47492 -16.04756 -15.50642 -15.38150 -15.26788 -15.12323 -14.80666 -14.67759 -14.28793 -14.01176 -13.80095 -13.76811 -13.66261 -13.60978 -13.45425 -13.12797 -13.11366 -12.97081 -12.75700 -12.56983 -12.47213 -12.24223 -12.08011 -12.01602 -11.73907 -11.67821 -11.55359 -11.47798 -11.42487 -11.32189 -11.20524 -10.53111 -9.47638 0.57825 1.16123 1.38525 1.42927 1.95195 2.39745 2.57403 2.69925 2.92544 2.95991 3.09547 3.28527 3.37532 3.51656 3.57832 3.63185 3.77805 3.85224 3.86934 3.90498 3.96897 3.97999 4.06526 4.08833 4.14187 4.18459 4.20629 4.24287 4.32295 4.35915 4.45336 4.47284 4.51871 4.55562 4.60681 4.68705 4.74181 4.77754 4.80664 4.89232 4.90410 4.95195 4.95224 4.98921 5.03242 5.08433 5.10257 5.11814 5.21505 5.22443 5.27956 5.29892 5.86002 5.94583 6.57205 Molecular weight = 297.24amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.006501 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.232042 B = 4305.665548 C = 4640.642714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.363 5.363 3 H 0.422 0.578 4 C 0.005 3.995 5 C -0.104 4.104 6 C -0.156 4.156 7 C 0.024 3.976 8 N -0.523 5.523 9 C 0.043 3.957 10 C 0.028 3.972 11 C -0.158 4.158 12 C -0.125 4.125 13 C 0.090 3.910 14 C -0.106 4.106 15 O -0.546 6.546 16 Si 0.943 3.057 17 H -0.277 1.277 18 H -0.251 1.251 19 H -0.272 1.272 20 C -0.147 4.147 21 C -0.133 4.133 22 C -0.139 4.139 23 C -0.130 4.130 24 C -0.160 4.160 25 H 0.124 0.876 26 H 0.131 0.869 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.163 0.837 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.133 0.867 43 H 0.411 0.589 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.083 0.917 52 H 0.098 0.902 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -1.808 2.391 4.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 N 0.056 4.944 3 H 0.262 0.738 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.195 4.195 7 C -0.105 4.105 8 N -0.243 5.243 9 C -0.086 4.086 10 C -0.100 4.100 11 C -0.197 4.197 12 C -0.162 4.162 13 C 0.006 3.994 14 C -0.219 4.219 15 O -0.357 6.357 16 Si 0.771 3.229 17 H -0.202 1.202 18 H -0.175 1.175 19 H -0.197 1.197 20 C -0.184 4.184 21 C -0.171 4.171 22 C -0.177 4.177 23 C -0.167 4.167 24 C -0.197 4.197 25 H 0.142 0.858 26 H 0.149 0.851 27 H 0.169 0.831 28 H 0.170 0.830 29 H 0.181 0.819 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.151 0.849 43 H 0.264 0.736 44 H 0.135 0.865 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.103 0.897 51 H 0.102 0.898 52 H 0.116 0.884 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.830 -2.010 2.593 4.333 hybrid contribution -0.324 0.443 0.452 0.711 sum -3.154 -1.566 3.045 4.656 Atomic orbital electron populations 1.24962 0.75150 1.11826 1.09746 1.45483 1.17055 1.18578 1.13291 0.73826 1.23981 1.08264 0.97620 0.81720 1.22717 0.96981 0.95305 0.95574 1.23323 0.98443 0.99288 0.98428 1.23063 0.99171 0.97674 0.90573 1.66312 1.18038 1.06675 1.33267 1.23610 1.01368 0.93660 0.89963 1.22569 0.91775 0.98339 0.97362 1.22479 1.01384 0.99137 0.96666 1.22653 0.95961 0.97713 0.99893 1.22396 0.97734 0.93100 0.86201 1.25805 0.89140 0.96076 1.10896 1.86367 1.16782 1.35604 1.96958 0.85748 0.79923 0.78917 0.78314 1.20204 1.17518 1.19680 1.22299 1.03918 0.96530 0.95662 1.21737 0.96184 0.95027 1.04129 1.21717 0.95280 1.01905 0.98799 1.21737 1.03146 0.93426 0.98429 1.22485 0.89805 0.99825 1.07591 0.85761 0.85147 0.83087 0.83002 0.81936 0.89233 0.88136 0.91932 0.90672 0.88414 0.89228 0.92409 0.90725 0.91094 0.91435 0.89214 0.88455 0.84908 0.73567 0.86549 0.89314 0.90777 0.89920 0.92127 0.91373 0.89713 0.89848 0.88374 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 4.19 7.24 127.69 0.92 5.11 16 2 N -0.36 19.97 0.09 -872.61 -0.08 19.89 16 3 H 0.42 -23.55 3.33 -89.69 -0.30 -23.85 16 4 C 0.01 -0.30 2.89 86.30 0.25 -0.05 16 5 C -0.10 4.88 0.76 -50.37 -0.04 4.84 16 6 C -0.16 6.80 3.85 31.64 0.12 6.92 16 7 C 0.02 -0.76 6.20 86.41 0.54 -0.23 16 8 N -0.52 15.28 6.06 -878.41 -5.33 9.96 16 9 C 0.04 -1.64 5.94 86.72 0.52 -1.13 16 10 C 0.03 -0.80 5.86 86.15 0.50 -0.30 16 11 C -0.16 5.53 5.53 31.18 0.17 5.70 16 12 C -0.13 5.62 4.03 31.52 0.13 5.75 16 13 C 0.09 -4.47 0.00 3.53 0.00 -4.47 16 14 C -0.11 5.19 1.69 71.98 0.12 5.31 16 15 O -0.55 26.94 8.76 -148.98 -1.31 25.63 16 16 Si 0.94 -34.81 24.44 68.60 1.68 -33.13 16 17 H -0.28 8.45 7.11 99.48 0.71 9.15 16 18 H -0.25 8.74 6.39 99.48 0.64 9.38 16 19 H -0.27 8.39 6.43 99.48 0.64 9.03 16 20 C -0.15 6.56 3.63 30.60 0.11 6.67 16 21 C -0.13 5.72 5.61 30.60 0.17 5.89 16 22 C -0.14 5.52 5.92 30.59 0.18 5.70 16 23 C -0.13 5.82 5.65 30.59 0.17 5.99 16 24 C -0.16 7.58 3.92 30.59 0.12 7.70 16 25 H 0.12 -6.60 5.31 -2.38 -0.01 -6.61 16 26 H 0.13 -7.27 4.68 -2.39 -0.01 -7.28 16 27 H 0.15 -8.37 5.45 -2.38 -0.01 -8.39 16 28 H 0.15 -8.80 5.33 -2.39 -0.01 -8.81 16 29 H 0.16 -9.57 7.01 -2.38 -0.02 -9.59 16 30 H 0.09 -4.03 6.88 -2.39 -0.02 -4.04 16 31 H 0.10 -4.73 6.98 -2.39 -0.02 -4.75 16 32 H 0.06 -1.81 6.94 -2.39 -0.02 -1.82 16 33 H 0.07 -2.23 8.14 -2.38 -0.02 -2.25 16 34 H 0.10 -3.82 8.14 -2.39 -0.02 -3.84 16 35 H 0.09 -3.37 7.74 -2.39 -0.02 -3.39 16 36 H 0.06 -1.35 8.14 -2.38 -0.02 -1.37 16 37 H 0.07 -2.06 7.87 -2.39 -0.02 -2.08 16 38 H 0.07 -2.44 5.37 -2.38 -0.01 -2.45 16 39 H 0.07 -2.18 8.14 -2.39 -0.02 -2.20 16 40 H 0.09 -4.00 8.11 -2.39 -0.02 -4.02 16 41 H 0.10 -4.91 4.93 -2.39 -0.01 -4.92 16 42 H 0.13 -7.46 6.11 -2.39 -0.01 -7.47 16 43 H 0.41 -21.49 8.74 -74.06 -0.65 -22.13 16 44 H 0.12 -5.37 5.36 -2.38 -0.01 -5.38 16 45 H 0.09 -3.52 5.89 -2.39 -0.01 -3.53 16 46 H 0.07 -2.82 8.14 -2.39 -0.02 -2.84 16 47 H 0.08 -3.98 6.66 -2.39 -0.02 -3.99 16 48 H 0.06 -2.15 8.14 -2.39 -0.02 -2.16 16 49 H 0.07 -2.48 8.14 -2.39 -0.02 -2.49 16 50 H 0.08 -3.49 8.14 -2.38 -0.02 -3.51 16 51 H 0.08 -4.14 4.58 -2.39 -0.01 -4.15 16 52 H 0.10 -4.22 5.30 -2.39 -0.01 -4.23 16 53 H 0.12 -6.52 6.16 -2.38 -0.01 -6.53 16 Total: 1.00 -60.33 327.86 -0.45 -60.78 By element: Atomic # 1 Polarization: -143.13 SS G_CDS: 0.59 Total: -142.54 kcal Atomic # 6 Polarization: 55.42 SS G_CDS: 3.99 Total: 59.41 kcal Atomic # 7 Polarization: 35.25 SS G_CDS: -5.40 Total: 29.85 kcal Atomic # 8 Polarization: 26.94 SS G_CDS: -1.31 Total: 25.63 kcal Atomic # 14 Polarization: -34.81 SS G_CDS: 1.68 Total: -33.13 kcal Total: -60.33 -0.45 -60.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692190710.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.042 kcal (2) G-P(sol) polarization free energy of solvation -60.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds