Wall clock time and date at job start Mon Mar 23 2020 11:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00897 * 109.47390 * 2 1 4 4 C 1.46903 * 109.46683 * 119.99939 * 2 1 3 5 5 C 1.52994 * 109.47279 * 292.85564 * 4 2 1 6 6 C 1.54987 * 113.20266 * 66.48442 * 5 4 2 7 7 C 1.54061 * 104.76610 * 146.48034 * 6 5 4 8 8 N 1.48239 * 106.69647 * 1.00516 * 7 6 5 9 9 C 1.48805 * 105.17582 * 332.52124 * 8 7 6 10 10 C 1.47673 * 108.91989 * 88.18000 * 8 7 6 11 11 C 1.52998 * 109.27738 * 312.91782 * 10 8 7 12 12 C 1.53152 * 109.98909 * 304.84810 * 11 10 8 13 13 C 1.46894 * 109.47139 * 239.99803 * 2 1 3 14 14 C 1.53004 * 109.47216 * 301.51253 * 13 2 1 15 15 O 1.42892 * 109.47352 * 65.59087 * 14 13 2 16 16 Si 1.86301 * 109.47162 * 185.59214 * 14 13 2 17 17 H 1.48506 * 109.46940 * 59.99695 * 16 14 13 18 18 H 1.48502 * 109.46995 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47306 * 299.99757 * 16 14 13 20 20 C 1.52995 * 109.47442 * 181.50866 * 13 2 1 21 21 C 1.53004 * 109.47231 * 300.00377 * 20 13 2 22 22 C 1.53000 * 109.46884 * 299.99795 * 21 20 13 23 23 C 1.53005 * 109.47012 * 59.99674 * 22 21 20 24 24 C 1.52993 * 109.47322 * 300.00104 * 23 22 21 25 25 H 1.09010 * 109.47279 * 319.50416 * 1 2 3 26 26 H 1.08997 * 109.47113 * 79.49846 * 1 2 3 27 27 H 1.09003 * 109.47564 * 199.50594 * 1 2 3 28 28 H 1.09000 * 109.46712 * 172.85261 * 4 2 1 29 29 H 1.09000 * 109.47020 * 52.85864 * 4 2 1 30 30 H 1.08996 * 110.38625 * 27.65490 * 6 5 4 31 31 H 1.09006 * 110.47163 * 265.34783 * 6 5 4 32 32 H 1.08998 * 110.01499 * 241.69804 * 7 6 5 33 33 H 1.08993 * 110.01460 * 120.31095 * 7 6 5 34 34 H 1.09002 * 110.93227 * 160.89797 * 9 8 7 35 35 H 1.08995 * 110.93476 * 284.56072 * 9 8 7 36 36 H 1.09000 * 109.50438 * 192.97684 * 10 8 7 37 37 H 1.08997 * 109.54110 * 72.87747 * 10 8 7 38 38 H 1.09001 * 109.36690 * 64.97667 * 11 10 8 39 39 H 1.08998 * 109.36677 * 184.72438 * 11 10 8 40 40 H 1.08998 * 109.63092 * 173.63560 * 12 11 10 41 41 H 1.09001 * 109.63456 * 294.22768 * 12 11 10 42 42 H 1.09000 * 109.46887 * 305.58772 * 14 13 2 43 43 H 0.96700 * 114.00331 * 60.00090 * 15 14 13 44 44 H 1.09007 * 109.47159 * 60.00168 * 20 13 2 45 45 H 1.08999 * 109.47592 * 179.97438 * 20 13 2 46 46 H 1.08994 * 109.47131 * 179.97438 * 21 20 13 47 47 H 1.08999 * 109.47240 * 59.99286 * 21 20 13 48 48 H 1.08998 * 109.47134 * 300.00176 * 22 21 20 49 49 H 1.08991 * 109.47460 * 179.97438 * 22 21 20 50 50 H 1.09001 * 109.46745 * 179.97438 * 23 22 21 51 51 H 1.08998 * 109.46762 * 60.00274 * 23 22 21 52 52 H 1.09006 * 109.47056 * 299.99688 * 24 23 22 53 53 H 1.09004 * 109.47356 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9512 0.0000 4 6 1.9586 -0.6925 1.1995 5 6 1.6003 0.1248 2.4422 6 6 0.0745 0.2026 2.7029 7 6 -0.0605 0.2370 4.2372 8 7 1.3160 0.2060 4.7866 9 6 2.1290 -0.5020 3.7609 10 6 1.8195 1.5900 4.8953 11 6 1.5313 2.3363 3.5911 12 6 2.1262 1.5691 2.4066 13 6 1.9586 -0.6925 -1.1994 14 6 1.4178 -2.1236 -1.2185 15 8 -0.0031 -2.0940 -1.3674 16 14 2.1724 -3.0536 -2.6456 17 1 3.6490 -3.0845 -2.4909 18 1 1.6479 -4.4428 -2.6638 19 1 1.8222 -2.3751 -3.9192 20 6 3.4881 -0.7255 -1.1806 21 6 4.0290 0.7056 -1.1614 22 6 3.5502 1.4485 -2.4104 23 6 2.0206 1.4814 -2.4292 24 6 1.4799 0.0503 -2.4483 25 1 -0.3634 0.7815 0.6674 26 1 -0.3633 0.1873 -1.0104 27 1 -0.3634 -0.9687 0.3431 28 1 3.0410 -0.8046 1.1379 29 1 1.4946 -1.6766 1.2656 30 1 -0.4253 -0.6771 2.2976 31 1 -0.3413 1.1101 2.2649 32 1 -0.6194 -0.6328 4.5822 33 1 -0.5651 1.1521 4.5469 34 1 3.1906 -0.2932 3.8932 35 1 1.9387 -1.5749 3.7858 36 1 2.8944 1.5732 5.0751 37 1 1.3202 2.0957 5.7218 38 1 0.4534 2.4281 3.4578 39 1 1.9758 3.3304 3.6377 40 1 1.8224 2.0433 1.4734 41 1 3.2136 1.5651 2.4817 42 1 1.6749 -2.6217 -0.2837 43 1 -0.3046 -1.6641 -2.1794 44 1 3.8292 -1.2548 -0.2908 45 1 3.8515 -1.2398 -2.0703 46 1 5.1186 0.6821 -1.1476 47 1 3.6656 1.2195 -0.2715 48 1 3.9135 0.9346 -3.3003 49 1 3.9351 2.4681 -2.3966 50 1 1.6796 2.0110 -3.3188 51 1 1.6574 1.9952 -1.5392 52 1 1.8432 -0.4635 -3.3384 53 1 0.3902 0.0738 -2.4622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692190710.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:28 Heat of formation + Delta-G solvation = 105.354107 kcal Electronic energy + Delta-G solvation = -28960.292728 eV Core-core repulsion = 25645.603923 eV Total energy + Delta-G solvation = -3314.688805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.241 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.21987 -43.39235 -39.81737 -39.62743 -35.54808 -34.90061 -34.74924 -33.60071 -32.49257 -30.37186 -29.33001 -28.56639 -26.62170 -25.83293 -25.30823 -24.48227 -23.17165 -23.07132 -21.93923 -21.34359 -20.49338 -19.70946 -19.39932 -18.70578 -18.44595 -18.11938 -17.82108 -17.35026 -17.18194 -17.04548 -16.86791 -16.63218 -16.57018 -16.35104 -15.83173 -15.71200 -15.51212 -15.37603 -15.26751 -15.24423 -15.02223 -14.92680 -14.69904 -14.55915 -14.24977 -14.17924 -13.73512 -13.70212 -13.58690 -13.41037 -13.34269 -13.22239 -13.19559 -13.11854 -13.06848 -13.01998 -12.44083 -10.91126 -1.39966 -0.64414 -0.14057 -0.07272 0.41987 0.49514 0.59375 0.69550 1.12379 1.14199 1.23187 1.26587 1.38553 1.52333 1.63803 1.86676 1.89795 1.92893 1.98948 2.01508 2.06015 2.13959 2.19280 2.23634 2.25826 2.34295 2.37085 2.43840 2.47377 2.53178 2.60181 2.64396 2.77868 2.81186 2.83262 2.86122 2.90923 2.93291 2.97795 3.00957 3.12594 3.19089 3.26484 3.34615 3.40133 3.42042 3.43587 3.56687 3.57283 3.60345 3.71697 3.83387 4.40839 4.41368 4.56129 Molecular weight = 297.24amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.006498 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.301605 B = 4308.058224 C = 4840.997427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.371 5.371 3 H 0.415 0.585 4 C 0.006 3.994 5 C -0.129 4.129 6 C -0.155 4.155 7 C 0.027 3.973 8 N -0.487 5.487 9 C 0.049 3.951 10 C 0.028 3.972 11 C -0.156 4.156 12 C -0.118 4.118 13 C 0.032 3.968 14 C -0.140 4.140 15 O -0.532 6.532 16 Si 0.951 3.049 17 H -0.236 1.236 18 H -0.234 1.234 19 H -0.237 1.237 20 C -0.153 4.153 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.130 4.130 24 C -0.156 4.156 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.135 0.865 43 H 0.385 0.615 44 H 0.098 0.902 45 H 0.115 0.885 46 H 0.097 0.903 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.057 0.943 52 H 0.116 0.884 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 1.435 -4.374 4.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 N 0.047 4.953 3 H 0.256 0.744 4 C -0.116 4.116 5 C -0.131 4.131 6 C -0.193 4.193 7 C -0.102 4.102 8 N -0.206 5.206 9 C -0.081 4.081 10 C -0.101 4.101 11 C -0.195 4.195 12 C -0.155 4.155 13 C -0.052 4.052 14 C -0.250 4.250 15 O -0.340 6.340 16 Si 0.769 3.231 17 H -0.160 1.160 18 H -0.157 1.157 19 H -0.160 1.160 20 C -0.190 4.190 21 C -0.169 4.169 22 C -0.171 4.171 23 C -0.167 4.167 24 C -0.193 4.193 25 H 0.139 0.861 26 H 0.138 0.862 27 H 0.160 0.840 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.152 0.848 43 H 0.236 0.764 44 H 0.116 0.884 45 H 0.133 0.867 46 H 0.115 0.885 47 H 0.076 0.924 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.115 0.885 51 H 0.075 0.925 52 H 0.134 0.866 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.391 0.170 -3.885 3.909 hybrid contribution -0.213 1.425 -0.929 1.714 sum 0.178 1.595 -4.814 5.074 Atomic orbital electron populations 1.24829 0.76019 1.10555 1.09138 1.45667 1.16564 1.18643 1.14380 0.74431 1.23828 1.05489 0.99822 0.82439 1.22916 0.98109 0.96820 0.95237 1.23524 0.93215 1.02930 0.99661 1.23154 0.91925 1.04106 0.90974 1.66372 1.01899 1.13062 1.39273 1.23597 0.99062 0.99921 0.85490 1.22711 1.01993 0.88466 0.96884 1.22245 1.02096 1.00326 0.94846 1.21949 1.02035 0.92542 0.99001 1.23568 0.99342 0.96356 0.85912 1.26774 0.87660 0.95457 1.15060 1.86646 1.17644 1.82993 1.46701 0.85585 0.80534 0.81794 0.75168 1.15969 1.15654 1.16015 1.22428 0.88626 1.00774 1.07214 1.21728 1.03820 0.93014 0.98361 1.21712 0.94342 1.02520 0.98544 1.21688 0.96806 0.94293 1.03914 1.22433 1.02897 0.97948 0.96057 0.86149 0.86233 0.83972 0.84709 0.84427 0.89889 0.90112 0.89100 0.89993 0.89016 0.88788 0.89874 0.89264 0.90687 0.90031 0.92817 0.89879 0.84754 0.76428 0.88363 0.86691 0.88487 0.92376 0.89965 0.89765 0.88516 0.92459 0.86589 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 1.71 6.26 60.06 0.38 2.09 16 2 N -0.37 10.01 0.19 -227.17 -0.04 9.97 16 3 H 0.42 -11.41 2.65 -39.29 -0.10 -11.51 16 4 C 0.01 -0.16 3.51 -3.83 -0.01 -0.17 16 5 C -0.13 2.94 0.85 -151.86 -0.13 2.81 16 6 C -0.15 3.33 3.54 -25.13 -0.09 3.24 16 7 C 0.03 -0.46 6.20 -2.53 -0.02 -0.47 16 8 N -0.49 7.60 6.06 -228.99 -1.39 6.21 16 9 C 0.05 -0.93 5.93 -1.55 -0.01 -0.94 16 10 C 0.03 -0.44 5.84 -3.40 -0.02 -0.46 16 11 C -0.16 2.86 5.53 -26.65 -0.15 2.71 16 12 C -0.12 2.56 4.76 -26.27 -0.13 2.44 16 13 C 0.03 -0.81 0.02 -131.60 0.00 -0.82 16 14 C -0.14 3.34 1.75 37.16 0.07 3.40 16 15 O -0.53 12.30 9.40 -35.23 -0.33 11.97 16 16 Si 0.95 -18.72 24.44 -169.99 -4.16 -22.87 16 17 H -0.24 4.48 6.38 56.52 0.36 4.84 16 18 H -0.23 3.66 7.11 56.52 0.40 4.06 16 19 H -0.24 4.53 6.42 56.52 0.36 4.89 16 20 C -0.15 3.71 3.69 -26.73 -0.10 3.62 16 21 C -0.13 3.05 5.66 -26.73 -0.15 2.90 16 22 C -0.13 2.90 5.92 -26.73 -0.16 2.74 16 23 C -0.13 3.01 5.66 -26.73 -0.15 2.86 16 24 C -0.16 3.85 3.65 -26.73 -0.10 3.75 16 25 H 0.12 -3.19 5.10 -51.92 -0.26 -3.46 16 26 H 0.12 -3.27 4.89 -51.93 -0.25 -3.52 16 27 H 0.14 -3.67 5.18 -51.93 -0.27 -3.94 16 28 H 0.14 -3.65 5.74 -51.93 -0.30 -3.95 16 29 H 0.14 -3.66 6.14 -51.93 -0.32 -3.98 16 30 H 0.08 -1.86 6.54 -51.93 -0.34 -2.20 16 31 H 0.08 -1.80 5.24 -51.93 -0.27 -2.07 16 32 H 0.09 -1.44 8.14 -51.93 -0.42 -1.86 16 33 H 0.08 -1.32 6.93 -51.93 -0.36 -1.68 16 34 H 0.09 -1.72 7.69 -51.93 -0.40 -2.12 16 35 H 0.09 -1.78 8.14 -51.93 -0.42 -2.20 16 36 H 0.08 -1.28 7.87 -51.93 -0.41 -1.69 16 37 H 0.09 -1.26 8.14 -51.93 -0.42 -1.69 16 38 H 0.07 -1.35 5.37 -51.93 -0.28 -1.63 16 39 H 0.08 -1.40 8.14 -51.93 -0.42 -1.82 16 40 H 0.05 -1.27 6.46 -51.93 -0.34 -1.61 16 41 H 0.08 -1.77 8.06 -51.93 -0.42 -2.19 16 42 H 0.13 -3.39 6.02 -51.93 -0.31 -3.70 16 43 H 0.39 -9.73 6.64 45.56 0.30 -9.43 16 44 H 0.10 -2.51 6.11 -51.92 -0.32 -2.83 16 45 H 0.11 -2.64 5.32 -51.93 -0.28 -2.92 16 46 H 0.10 -2.08 8.14 -51.93 -0.42 -2.51 16 47 H 0.06 -1.43 6.69 -51.93 -0.35 -1.78 16 48 H 0.08 -1.68 8.14 -51.93 -0.42 -2.11 16 49 H 0.08 -1.69 8.14 -51.93 -0.42 -2.11 16 50 H 0.10 -2.08 8.14 -51.93 -0.42 -2.51 16 51 H 0.06 -1.41 6.61 -51.93 -0.34 -1.75 16 52 H 0.12 -2.73 5.85 -51.93 -0.30 -3.03 16 53 H 0.10 -2.53 4.69 -51.93 -0.24 -2.78 16 LS Contribution 325.71 15.07 4.91 4.91 Total: 1.00 -26.72 325.71 -10.20 -36.92 By element: Atomic # 1 Polarization: -68.37 SS G_CDS: -8.42 Total: -76.79 kcal Atomic # 6 Polarization: 30.46 SS G_CDS: -0.77 Total: 29.69 kcal Atomic # 7 Polarization: 17.61 SS G_CDS: -1.43 Total: 16.18 kcal Atomic # 8 Polarization: 12.30 SS G_CDS: -0.33 Total: 11.97 kcal Atomic # 14 Polarization: -18.72 SS G_CDS: -4.16 Total: -22.87 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.72 -10.20 -36.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692190710.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.270 kcal (2) G-P(sol) polarization free energy of solvation -26.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds