Wall clock time and date at job start Mon Mar 23 2020 11:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00897 * 109.47390 * 2 1 4 4 C 1.46903 * 109.46683 * 119.99939 * 2 1 3 5 5 C 1.52994 * 109.47279 * 292.85564 * 4 2 1 6 6 C 1.54987 * 113.20266 * 66.48442 * 5 4 2 7 7 C 1.54061 * 104.76610 * 146.48034 * 6 5 4 8 8 N 1.48239 * 106.69647 * 1.00516 * 7 6 5 9 9 C 1.48805 * 105.17582 * 332.52124 * 8 7 6 10 10 C 1.47673 * 108.91989 * 88.18000 * 8 7 6 11 11 C 1.52998 * 109.27738 * 312.91782 * 10 8 7 12 12 C 1.53152 * 109.98909 * 304.84810 * 11 10 8 13 13 C 1.46894 * 109.47139 * 239.99803 * 2 1 3 14 14 C 1.53004 * 109.47216 * 301.51253 * 13 2 1 15 15 O 1.42892 * 109.47352 * 65.59087 * 14 13 2 16 16 Si 1.86301 * 109.47162 * 185.59214 * 14 13 2 17 17 H 1.48506 * 109.46940 * 59.99695 * 16 14 13 18 18 H 1.48502 * 109.46995 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47306 * 299.99757 * 16 14 13 20 20 C 1.52995 * 109.47442 * 181.50866 * 13 2 1 21 21 C 1.53004 * 109.47231 * 300.00377 * 20 13 2 22 22 C 1.53000 * 109.46884 * 299.99795 * 21 20 13 23 23 C 1.53005 * 109.47012 * 59.99674 * 22 21 20 24 24 C 1.52993 * 109.47322 * 300.00104 * 23 22 21 25 25 H 1.09010 * 109.47279 * 319.50416 * 1 2 3 26 26 H 1.08997 * 109.47113 * 79.49846 * 1 2 3 27 27 H 1.09003 * 109.47564 * 199.50594 * 1 2 3 28 28 H 1.09000 * 109.46712 * 172.85261 * 4 2 1 29 29 H 1.09000 * 109.47020 * 52.85864 * 4 2 1 30 30 H 1.08996 * 110.38625 * 27.65490 * 6 5 4 31 31 H 1.09006 * 110.47163 * 265.34783 * 6 5 4 32 32 H 1.08998 * 110.01499 * 241.69804 * 7 6 5 33 33 H 1.08993 * 110.01460 * 120.31095 * 7 6 5 34 34 H 1.09002 * 110.93227 * 160.89797 * 9 8 7 35 35 H 1.08995 * 110.93476 * 284.56072 * 9 8 7 36 36 H 1.09000 * 109.50438 * 192.97684 * 10 8 7 37 37 H 1.08997 * 109.54110 * 72.87747 * 10 8 7 38 38 H 1.09001 * 109.36690 * 64.97667 * 11 10 8 39 39 H 1.08998 * 109.36677 * 184.72438 * 11 10 8 40 40 H 1.08998 * 109.63092 * 173.63560 * 12 11 10 41 41 H 1.09001 * 109.63456 * 294.22768 * 12 11 10 42 42 H 1.09000 * 109.46887 * 305.58772 * 14 13 2 43 43 H 0.96700 * 114.00331 * 60.00090 * 15 14 13 44 44 H 1.09007 * 109.47159 * 60.00168 * 20 13 2 45 45 H 1.08999 * 109.47592 * 179.97438 * 20 13 2 46 46 H 1.08994 * 109.47131 * 179.97438 * 21 20 13 47 47 H 1.08999 * 109.47240 * 59.99286 * 21 20 13 48 48 H 1.08998 * 109.47134 * 300.00176 * 22 21 20 49 49 H 1.08991 * 109.47460 * 179.97438 * 22 21 20 50 50 H 1.09001 * 109.46745 * 179.97438 * 23 22 21 51 51 H 1.08998 * 109.46762 * 60.00274 * 23 22 21 52 52 H 1.09006 * 109.47056 * 299.99688 * 24 23 22 53 53 H 1.09004 * 109.47356 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9512 0.0000 4 6 1.9586 -0.6925 1.1995 5 6 1.6003 0.1248 2.4422 6 6 0.0745 0.2026 2.7029 7 6 -0.0605 0.2370 4.2372 8 7 1.3160 0.2060 4.7866 9 6 2.1290 -0.5020 3.7609 10 6 1.8195 1.5900 4.8953 11 6 1.5313 2.3363 3.5911 12 6 2.1262 1.5691 2.4066 13 6 1.9586 -0.6925 -1.1994 14 6 1.4178 -2.1236 -1.2185 15 8 -0.0031 -2.0940 -1.3674 16 14 2.1724 -3.0536 -2.6456 17 1 3.6490 -3.0845 -2.4909 18 1 1.6479 -4.4428 -2.6638 19 1 1.8222 -2.3751 -3.9192 20 6 3.4881 -0.7255 -1.1806 21 6 4.0290 0.7056 -1.1614 22 6 3.5502 1.4485 -2.4104 23 6 2.0206 1.4814 -2.4292 24 6 1.4799 0.0503 -2.4483 25 1 -0.3634 0.7815 0.6674 26 1 -0.3633 0.1873 -1.0104 27 1 -0.3634 -0.9687 0.3431 28 1 3.0410 -0.8046 1.1379 29 1 1.4946 -1.6766 1.2656 30 1 -0.4253 -0.6771 2.2976 31 1 -0.3413 1.1101 2.2649 32 1 -0.6194 -0.6328 4.5822 33 1 -0.5651 1.1521 4.5469 34 1 3.1906 -0.2932 3.8932 35 1 1.9387 -1.5749 3.7858 36 1 2.8944 1.5732 5.0751 37 1 1.3202 2.0957 5.7218 38 1 0.4534 2.4281 3.4578 39 1 1.9758 3.3304 3.6377 40 1 1.8224 2.0433 1.4734 41 1 3.2136 1.5651 2.4817 42 1 1.6749 -2.6217 -0.2837 43 1 -0.3046 -1.6641 -2.1794 44 1 3.8292 -1.2548 -0.2908 45 1 3.8515 -1.2398 -2.0703 46 1 5.1186 0.6821 -1.1476 47 1 3.6656 1.2195 -0.2715 48 1 3.9135 0.9346 -3.3003 49 1 3.9351 2.4681 -2.3966 50 1 1.6796 2.0110 -3.3188 51 1 1.6574 1.9952 -1.5392 52 1 1.8432 -0.4635 -3.3384 53 1 0.3902 0.0738 -2.4622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692190710.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:28 Heat of formation + Delta-G solvation = 88.296396 kcal Electronic energy + Delta-G solvation = -28961.032406 eV Core-core repulsion = 25645.603923 eV Total energy + Delta-G solvation = -3315.428483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.241 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.24855 -41.78041 -37.91913 -37.75314 -33.83686 -33.21839 -32.94981 -31.75028 -30.80201 -28.46248 -27.43628 -26.73493 -24.94557 -23.94430 -23.69243 -22.60748 -21.59635 -21.17358 -20.26952 -19.30668 -18.60462 -17.78468 -17.47201 -17.02048 -16.64095 -16.41963 -16.03893 -15.44886 -15.41886 -15.32971 -15.15607 -14.90867 -14.74705 -14.55518 -13.98720 -13.89068 -13.75256 -13.62299 -13.57086 -13.40249 -13.25087 -13.06997 -12.93842 -12.75215 -12.66858 -12.42074 -12.15212 -12.05183 -11.87701 -11.73935 -11.70256 -11.61018 -11.52274 -11.43755 -11.33320 -11.23700 -10.61881 -9.47136 0.56556 1.13374 1.36555 1.42882 1.96861 2.48931 2.59072 2.64320 2.91526 3.05710 3.13628 3.19247 3.31558 3.45200 3.47983 3.61201 3.81614 3.85398 3.88015 3.90788 3.95569 3.98083 4.03236 4.06892 4.12064 4.18691 4.24087 4.28203 4.32787 4.36884 4.39894 4.48714 4.50977 4.54754 4.63073 4.69315 4.74177 4.75988 4.79523 4.83496 4.91830 4.93888 4.95394 4.99273 5.03887 5.05553 5.09890 5.14777 5.20173 5.22383 5.29390 5.32053 5.86253 5.95036 6.41717 Molecular weight = 297.24amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.006498 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.301605 B = 4308.058224 C = 4840.997427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.360 5.360 3 H 0.423 0.577 4 C 0.006 3.994 5 C -0.101 4.101 6 C -0.149 4.149 7 C 0.019 3.981 8 N -0.524 5.524 9 C 0.040 3.960 10 C 0.027 3.973 11 C -0.155 4.155 12 C -0.118 4.118 13 C 0.051 3.949 14 C -0.105 4.105 15 O -0.536 6.536 16 Si 0.948 3.052 17 H -0.248 1.248 18 H -0.295 1.295 19 H -0.250 1.250 20 C -0.159 4.159 21 C -0.129 4.129 22 C -0.140 4.140 23 C -0.128 4.128 24 C -0.160 4.160 25 H 0.127 0.873 26 H 0.132 0.868 27 H 0.143 0.857 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.161 0.839 43 H 0.395 0.605 44 H 0.122 0.878 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.083 0.917 52 H 0.101 0.899 53 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 1.731 -4.865 5.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 N 0.058 4.942 3 H 0.264 0.736 4 C -0.116 4.116 5 C -0.103 4.103 6 C -0.187 4.187 7 C -0.110 4.110 8 N -0.245 5.245 9 C -0.089 4.089 10 C -0.101 4.101 11 C -0.194 4.194 12 C -0.156 4.156 13 C -0.033 4.033 14 C -0.218 4.218 15 O -0.346 6.346 16 Si 0.775 3.225 17 H -0.172 1.172 18 H -0.221 1.221 19 H -0.174 1.174 20 C -0.196 4.196 21 C -0.167 4.167 22 C -0.178 4.178 23 C -0.165 4.165 24 C -0.197 4.197 25 H 0.145 0.855 26 H 0.150 0.850 27 H 0.161 0.839 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.178 0.822 43 H 0.248 0.752 44 H 0.140 0.860 45 H 0.116 0.884 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.101 0.899 52 H 0.119 0.881 53 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.318 0.482 -4.414 4.452 hybrid contribution 0.036 1.283 -0.793 1.509 sum -0.282 1.765 -5.207 5.505 Atomic orbital electron populations 1.25005 0.75489 1.10906 1.10231 1.45466 1.16849 1.18725 1.13159 0.73558 1.23890 1.07056 0.99723 0.80888 1.22581 0.96631 0.96144 0.94950 1.23535 0.94488 1.04729 0.95960 1.23150 0.91017 1.02221 0.94589 1.66302 1.03134 1.13106 1.41931 1.23627 0.98513 0.99807 0.86918 1.22586 1.00833 0.89104 0.97624 1.22180 1.02250 0.99851 0.95092 1.21971 1.02107 0.92860 0.98632 1.23137 0.98449 0.95420 0.86291 1.26180 0.87217 0.95674 1.12735 1.86650 1.17273 1.83288 1.47344 0.85669 0.79984 0.78987 0.77835 1.17179 1.22142 1.17392 1.22460 0.89309 1.00154 1.07665 1.21683 1.02837 0.93706 0.98450 1.21718 0.95900 1.01380 0.98771 1.21647 0.95322 0.95215 1.04333 1.22456 1.04455 0.96936 0.95815 0.85491 0.85011 0.83905 0.82761 0.82675 0.87912 0.88538 0.90978 0.91889 0.89376 0.88724 0.90854 0.92401 0.90772 0.91299 0.89455 0.89566 0.82202 0.75234 0.86022 0.88377 0.90295 0.89767 0.92060 0.91624 0.90352 0.89880 0.88097 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 4.27 6.26 127.69 0.80 5.07 16 2 N -0.36 20.44 0.19 -872.62 -0.16 20.28 16 3 H 0.42 -24.71 2.65 -89.70 -0.24 -24.94 16 4 C 0.01 -0.33 3.51 86.30 0.30 -0.03 16 5 C -0.10 4.76 0.85 -50.47 -0.04 4.71 16 6 C -0.15 6.55 3.54 31.63 0.11 6.66 16 7 C 0.02 -0.59 6.20 86.40 0.54 -0.06 16 8 N -0.52 15.07 6.06 -878.39 -5.33 9.74 16 9 C 0.04 -1.51 5.93 86.72 0.51 -1.00 16 10 C 0.03 -0.77 5.84 86.15 0.50 -0.27 16 11 C -0.15 5.47 5.53 30.64 0.17 5.64 16 12 C -0.12 5.31 4.76 30.89 0.15 5.45 16 13 C 0.05 -2.69 0.02 3.53 0.00 -2.69 16 14 C -0.10 5.11 1.75 71.98 0.13 5.24 16 15 O -0.54 25.72 9.40 -148.98 -1.40 24.32 16 16 Si 0.95 -35.22 24.44 68.60 1.68 -33.54 16 17 H -0.25 8.77 6.38 99.48 0.64 9.41 16 18 H -0.30 7.89 7.11 99.48 0.71 8.60 16 19 H -0.25 8.84 6.42 99.48 0.64 9.48 16 20 C -0.16 7.80 3.69 30.59 0.11 7.92 16 21 C -0.13 6.02 5.66 30.60 0.17 6.19 16 22 C -0.14 5.89 5.92 30.60 0.18 6.07 16 23 C -0.13 5.97 5.66 30.59 0.17 6.14 16 24 C -0.16 7.97 3.65 30.59 0.11 8.08 16 25 H 0.13 -7.20 5.10 -2.38 -0.01 -7.21 16 26 H 0.13 -7.67 4.89 -2.39 -0.01 -7.68 16 27 H 0.14 -7.90 5.18 -2.39 -0.01 -7.91 16 28 H 0.15 -8.93 5.74 -2.39 -0.01 -8.95 16 29 H 0.16 -8.88 6.14 -2.39 -0.01 -8.89 16 30 H 0.10 -4.85 6.54 -2.39 -0.02 -4.86 16 31 H 0.10 -4.49 5.24 -2.38 -0.01 -4.50 16 32 H 0.07 -2.09 8.14 -2.39 -0.02 -2.11 16 33 H 0.06 -1.82 6.93 -2.39 -0.02 -1.84 16 34 H 0.09 -3.25 7.69 -2.39 -0.02 -3.26 16 35 H 0.09 -3.57 8.14 -2.39 -0.02 -3.59 16 36 H 0.07 -2.00 7.87 -2.39 -0.02 -2.02 16 37 H 0.06 -1.34 8.14 -2.39 -0.02 -1.36 16 38 H 0.07 -2.60 5.37 -2.39 -0.01 -2.61 16 39 H 0.07 -2.25 8.14 -2.39 -0.02 -2.27 16 40 H 0.09 -4.45 6.46 -2.39 -0.02 -4.46 16 41 H 0.09 -3.81 8.06 -2.39 -0.02 -3.83 16 42 H 0.16 -8.53 6.02 -2.39 -0.01 -8.55 16 43 H 0.40 -20.62 6.64 -74.06 -0.49 -21.11 16 44 H 0.12 -6.51 6.11 -2.38 -0.01 -6.52 16 45 H 0.10 -4.41 5.32 -2.39 -0.01 -4.42 16 46 H 0.08 -3.31 8.14 -2.39 -0.02 -3.33 16 47 H 0.08 -4.35 6.69 -2.39 -0.02 -4.36 16 48 H 0.06 -2.32 8.14 -2.39 -0.02 -2.34 16 49 H 0.06 -2.50 8.14 -2.39 -0.02 -2.52 16 50 H 0.08 -3.31 8.14 -2.39 -0.02 -3.32 16 51 H 0.08 -4.29 6.61 -2.39 -0.02 -4.31 16 52 H 0.10 -4.65 5.85 -2.38 -0.01 -4.66 16 53 H 0.12 -6.65 4.69 -2.38 -0.01 -6.66 16 Total: 1.00 -62.51 325.71 -0.49 -63.00 By element: Atomic # 1 Polarization: -147.74 SS G_CDS: 0.80 Total: -146.93 kcal Atomic # 6 Polarization: 59.21 SS G_CDS: 3.92 Total: 63.13 kcal Atomic # 7 Polarization: 35.51 SS G_CDS: -5.49 Total: 30.02 kcal Atomic # 8 Polarization: 25.72 SS G_CDS: -1.40 Total: 24.32 kcal Atomic # 14 Polarization: -35.22 SS G_CDS: 1.68 Total: -33.54 kcal Total: -62.51 -0.49 -63.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692190710.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.295 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds