Wall clock time and date at job start Mon Mar 23 2020 11:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 H 1.00900 * 109.47769 * 2 1 4 4 C 1.46905 * 109.46863 * 119.99743 * 2 1 3 5 5 C 1.53002 * 109.46940 * 292.15603 * 4 2 1 6 6 C 1.55004 * 113.24613 * 68.52801 * 5 4 2 7 7 C 1.56380 * 103.66053 * 147.18145 * 6 5 4 8 8 N 1.48071 * 107.05520 * 0.39689 * 7 6 5 9 9 H 1.00903 * 112.30387 * 211.83732 * 8 7 6 10 10 C 1.48646 * 105.48208 * 333.53802 * 8 7 6 11 11 C 1.47441 * 108.26339 * 88.25989 * 8 7 6 12 12 C 1.52938 * 109.66355 * 313.36901 * 11 8 7 13 13 C 1.53207 * 110.02275 * 304.39836 * 12 11 8 14 14 C 1.46893 * 109.47228 * 239.99492 * 2 1 3 15 15 C 1.53006 * 109.47254 * 177.00381 * 14 2 1 16 16 O 1.42896 * 109.47100 * 179.43610 * 15 14 2 17 17 Si 1.86300 * 109.46903 * 299.43981 * 15 14 2 18 18 H 1.48499 * 109.47132 * 295.03736 * 17 15 14 19 19 H 1.48493 * 109.47175 * 55.04100 * 17 15 14 20 20 H 1.48502 * 109.46830 * 175.03957 * 17 15 14 21 21 C 1.53004 * 109.47205 * 297.00272 * 14 2 1 22 22 C 1.53002 * 109.46982 * 180.02562 * 21 14 2 23 23 C 1.53005 * 109.47156 * 299.99857 * 22 21 14 24 24 C 1.52998 * 109.46759 * 60.00237 * 23 22 21 25 25 C 1.52995 * 109.47368 * 57.00264 * 14 2 1 26 26 H 1.08999 * 109.46450 * 70.68162 * 1 2 3 27 27 H 1.08997 * 109.47349 * 190.68100 * 1 2 3 28 28 H 1.08993 * 109.47175 * 310.68628 * 1 2 3 29 29 H 1.09000 * 109.47038 * 52.15221 * 4 2 1 30 30 H 1.08998 * 109.46963 * 172.15517 * 4 2 1 31 31 H 1.09000 * 110.37735 * 265.44079 * 6 5 4 32 32 H 1.09004 * 110.37226 * 27.78724 * 6 5 4 33 33 H 1.09001 * 109.92032 * 240.96241 * 7 6 5 34 34 H 1.08999 * 109.87747 * 119.80834 * 7 6 5 35 35 H 1.09006 * 111.61205 * 283.18777 * 10 8 7 36 36 H 1.08997 * 110.08736 * 159.56993 * 10 8 7 37 37 H 1.08995 * 109.43436 * 193.31240 * 11 8 7 38 38 H 1.08993 * 109.43639 * 73.42891 * 11 8 7 39 39 H 1.09003 * 109.37636 * 184.23125 * 12 11 8 40 40 H 1.08998 * 109.38384 * 64.57309 * 12 11 8 41 41 H 1.08994 * 109.71602 * 294.18017 * 13 12 11 42 42 H 1.09005 * 109.70780 * 173.55056 * 13 12 11 43 43 H 1.08998 * 109.47026 * 59.43721 * 15 14 2 44 44 H 0.96703 * 114.00044 * 103.34600 * 16 15 14 45 45 H 1.09003 * 109.47358 * 299.99847 * 21 14 2 46 46 H 1.09000 * 109.46924 * 60.00342 * 21 14 2 47 47 H 1.09004 * 109.46999 * 180.02562 * 22 21 14 48 48 H 1.08990 * 109.47638 * 59.99916 * 22 21 14 49 49 H 1.09006 * 109.47150 * 300.00706 * 23 22 21 50 50 H 1.08991 * 109.47032 * 180.02562 * 23 22 21 51 51 H 1.09003 * 109.47058 * 180.02562 * 24 23 22 52 52 H 1.08997 * 109.47492 * 60.00281 * 24 23 22 53 53 H 1.09000 * 109.47384 * 300.00039 * 25 14 2 54 54 H 1.09009 * 109.46862 * 60.00078 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8055 0.9513 0.0000 4 6 1.9587 -0.6925 1.1995 5 6 1.6157 0.1335 2.4409 6 6 0.0957 0.1865 2.7397 7 6 0.0283 0.2563 4.3005 8 7 1.4236 0.2510 4.7961 9 1 1.5099 -0.2043 5.6924 10 6 2.2137 -0.4492 3.7497 11 6 1.9003 1.6452 4.8494 12 6 1.5399 2.3625 3.5476 13 6 2.1052 1.5918 2.3502 14 6 1.9587 -0.6926 -1.1993 15 6 3.4869 -0.6276 -1.2376 16 8 3.9639 -1.3126 -2.3974 17 14 4.0313 1.1530 -1.3001 18 1 3.5793 1.7643 -2.5757 19 1 3.4364 1.8929 -0.1584 20 1 5.5124 1.2209 -1.2162 21 6 1.5112 -2.1552 -1.1621 22 6 2.0218 -2.8767 -2.4109 23 6 1.4517 -2.2006 -3.6595 24 6 1.8992 -0.7380 -3.6967 25 6 1.3881 -0.0164 -2.4475 26 1 -0.3632 0.3400 -0.9698 27 1 -0.3634 -1.0098 0.1905 28 1 -0.3633 0.6699 0.7792 29 1 1.4853 -1.6716 1.2725 30 1 3.0396 -0.8156 1.1322 31 1 -0.3468 1.0802 2.2995 32 1 -0.3972 -0.7085 2.3600 33 1 -0.5080 -0.6098 4.6882 34 1 -0.4732 1.1735 4.6092 35 1 2.0710 -1.5290 3.7943 36 1 3.2688 -0.1921 3.8424 37 1 2.9823 1.6538 4.9807 38 1 1.4295 2.1577 5.6882 39 1 1.9593 3.3685 3.5608 40 1 0.4555 2.4258 3.4577 41 1 3.1945 1.6164 2.3781 42 1 1.7505 2.0416 1.4228 43 1 3.8932 -1.1006 -0.3435 44 1 4.2448 -0.7260 -3.1130 45 1 1.9178 -2.6371 -0.2729 46 1 0.4226 -2.2015 -1.1349 47 1 1.7027 -3.9186 -2.3846 48 1 3.1104 -2.8304 -2.4378 49 1 0.3629 -2.2468 -3.6326 50 1 1.8150 -2.7148 -4.5491 51 1 1.4926 -0.2561 -4.5859 52 1 2.9878 -0.6916 -3.7235 53 1 0.2994 -0.0626 -2.4203 54 1 1.7070 1.0257 -2.4740 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692190710.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:37 Heat of formation + Delta-G solvation = 217.702305 kcal Electronic energy + Delta-G solvation = -29150.024778 eV Core-core repulsion = 25826.552018 eV Total energy + Delta-G solvation = -3323.472761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.249 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.48076 -43.08277 -39.57939 -36.66879 -35.49274 -33.79813 -32.39431 -31.82982 -31.58534 -29.43103 -27.69202 -26.59252 -25.95978 -24.73814 -23.88716 -22.88741 -22.54670 -20.79088 -20.57767 -19.98779 -19.42277 -18.76446 -18.41349 -17.88410 -17.32184 -16.66016 -16.43147 -16.17860 -15.81590 -15.58121 -15.30327 -15.06460 -14.93155 -14.69661 -14.56991 -14.15058 -14.09402 -13.99216 -13.87861 -13.72036 -13.54790 -13.31295 -13.26057 -13.16861 -12.73424 -12.53620 -12.47604 -12.37237 -12.18810 -12.15801 -12.01549 -11.97483 -11.81194 -11.71096 -11.51842 -11.27769 -10.80163 -10.35137 0.46686 0.59958 0.87240 0.95374 1.28605 1.90390 2.25003 2.29664 2.57354 2.60496 2.63065 2.87900 3.00868 3.14428 3.21202 3.30692 3.35445 3.42286 3.46389 3.51117 3.52832 3.80639 3.82752 3.93601 3.98475 4.02979 4.07440 4.10323 4.15977 4.18025 4.23150 4.28008 4.31491 4.36700 4.41350 4.47311 4.50528 4.51885 4.54092 4.56443 4.59020 4.72627 4.80326 4.82717 4.84404 4.85344 4.91970 4.94675 4.99282 5.13914 5.15571 5.17415 5.35780 5.41615 5.77188 6.28767 Molecular weight = 298.25amu Principal moments of inertia in cm(-1) A = 0.022992 B = 0.005997 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.526146 B = 4667.654641 C = 5099.744394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.373 5.373 3 H 0.419 0.581 4 C -0.012 4.012 5 C -0.093 4.093 6 C -0.154 4.154 7 C -0.011 4.011 8 N -0.376 5.376 9 H 0.453 0.547 10 C 0.011 3.989 11 C -0.004 4.004 12 C -0.150 4.150 13 C -0.156 4.156 14 C 0.060 3.940 15 C -0.121 4.121 16 O -0.518 6.518 17 Si 0.888 3.112 18 H -0.260 1.260 19 H -0.178 1.178 20 H -0.279 1.279 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.149 4.149 26 H 0.122 0.878 27 H 0.150 0.850 28 H 0.156 0.844 29 H 0.180 0.820 30 H 0.160 0.840 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.157 0.843 44 H 0.379 0.621 45 H 0.119 0.881 46 H 0.101 0.899 47 H 0.049 0.951 48 H 0.106 0.894 49 H 0.058 0.942 50 H 0.033 0.967 51 H 0.051 0.949 52 H 0.092 0.908 53 H 0.114 0.886 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 2.442 19.770 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 N 0.045 4.955 3 H 0.260 0.740 4 C -0.133 4.133 5 C -0.094 4.094 6 C -0.191 4.191 7 C -0.132 4.132 8 N 0.042 4.958 9 H 0.294 0.706 10 C -0.111 4.111 11 C -0.126 4.126 12 C -0.187 4.187 13 C -0.193 4.193 14 C -0.024 4.024 15 C -0.234 4.234 16 O -0.330 6.330 17 Si 0.712 3.288 18 H -0.184 1.184 19 H -0.101 1.101 20 H -0.204 1.204 21 C -0.147 4.147 22 C -0.173 4.173 23 C -0.160 4.160 24 C -0.177 4.177 25 C -0.186 4.186 26 H 0.140 0.860 27 H 0.168 0.832 28 H 0.174 0.826 29 H 0.198 0.802 30 H 0.178 0.822 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.146 0.854 35 H 0.184 0.816 36 H 0.170 0.830 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.174 0.826 44 H 0.235 0.765 45 H 0.137 0.863 46 H 0.120 0.880 47 H 0.067 0.933 48 H 0.124 0.876 49 H 0.077 0.923 50 H 0.052 0.948 51 H 0.070 0.930 52 H 0.110 0.890 53 H 0.132 0.868 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.585 2.707 19.947 20.891 hybrid contribution 0.481 0.584 -0.986 1.244 sum -5.104 3.292 18.961 19.910 Atomic orbital electron populations 1.25137 0.74710 1.12127 1.11314 1.45622 1.17586 1.18609 1.13690 0.73951 1.24146 1.08305 1.00491 0.80354 1.22388 0.97217 0.95714 0.94085 1.24091 0.93853 1.08270 0.92895 1.24833 0.80635 1.10304 0.97459 1.45971 1.15385 1.15627 1.18778 0.70642 1.24930 0.99757 1.02818 0.83577 1.23887 1.06022 0.80022 1.02711 1.22071 1.04349 1.00676 0.91625 1.22563 1.04222 0.92520 0.99995 1.22748 0.97231 0.97543 0.84916 1.26343 0.92250 1.09608 0.95153 1.86860 1.84030 1.35932 1.26196 0.86667 0.82701 0.74978 0.84434 1.18446 1.10068 1.20389 1.21990 1.03369 0.88557 1.00799 1.21848 1.04260 0.97988 0.93191 1.21469 1.00225 0.95713 0.98640 1.22008 1.03570 0.95234 0.96934 1.22304 1.04165 0.99876 0.92225 0.85991 0.83214 0.82616 0.80225 0.82222 0.86413 0.84839 0.83859 0.85355 0.81561 0.82962 0.84612 0.85516 0.89163 0.88134 0.87750 0.89365 0.82612 0.76520 0.86282 0.88049 0.93271 0.87594 0.92335 0.94760 0.93040 0.89006 0.86771 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 8.32 7.12 127.69 0.91 9.23 16 2 N -0.37 32.94 0.19 -872.61 -0.17 32.77 16 3 H 0.42 -37.49 3.24 -89.69 -0.29 -37.78 16 4 C -0.01 1.15 3.39 86.30 0.29 1.44 16 5 C -0.09 8.80 0.82 -50.36 -0.04 8.76 16 6 C -0.15 14.50 3.69 32.46 0.12 14.62 16 7 C -0.01 0.98 6.14 87.25 0.54 1.52 16 8 N -0.38 35.61 1.10 -875.23 -0.96 34.66 16 9 H 0.45 -43.71 8.82 -89.69 -0.79 -44.50 16 10 C 0.01 -1.08 5.85 86.74 0.51 -0.57 16 11 C 0.00 0.37 5.64 86.18 0.49 0.86 16 12 C -0.15 12.71 5.52 30.64 0.17 12.88 16 13 C -0.16 13.86 4.49 31.03 0.14 14.00 16 14 C 0.06 -4.62 0.03 3.53 0.00 -4.62 16 15 C -0.12 8.70 1.79 71.98 0.13 8.83 16 16 O -0.52 31.51 7.57 -148.98 -1.13 30.38 16 17 Si 0.89 -59.03 23.90 68.60 1.64 -57.39 16 18 H -0.26 15.31 6.60 99.48 0.66 15.96 16 19 H -0.18 13.87 5.81 99.48 0.58 14.45 16 20 H -0.28 15.17 7.11 99.48 0.71 15.87 16 21 C -0.11 8.06 3.88 30.60 0.12 8.18 16 22 C -0.14 7.84 5.59 30.60 0.17 8.01 16 23 C -0.12 6.40 5.90 30.60 0.18 6.58 16 24 C -0.14 7.90 5.57 30.61 0.17 8.07 16 25 C -0.15 10.19 3.91 30.61 0.12 10.31 16 26 H 0.12 -10.36 5.53 -2.39 -0.01 -10.37 16 27 H 0.15 -13.78 6.21 -2.39 -0.01 -13.79 16 28 H 0.16 -14.67 4.48 -2.39 -0.01 -14.68 16 29 H 0.18 -17.69 6.31 -2.39 -0.02 -17.70 16 30 H 0.16 -15.34 5.85 -2.39 -0.01 -15.36 16 31 H 0.12 -11.04 5.23 -2.39 -0.01 -11.05 16 32 H 0.13 -12.86 7.03 -2.39 -0.02 -12.88 16 33 H 0.14 -13.17 8.14 -2.39 -0.02 -13.19 16 34 H 0.13 -11.45 6.86 -2.39 -0.02 -11.47 16 35 H 0.17 -16.47 8.14 -2.38 -0.02 -16.49 16 36 H 0.15 -14.68 7.56 -2.39 -0.02 -14.70 16 37 H 0.14 -11.95 7.79 -2.39 -0.02 -11.97 16 38 H 0.13 -10.80 8.14 -2.39 -0.02 -10.82 16 39 H 0.09 -7.00 8.14 -2.39 -0.02 -7.02 16 40 H 0.10 -8.61 5.31 -2.39 -0.01 -8.62 16 41 H 0.10 -9.19 8.05 -2.39 -0.02 -9.21 16 42 H 0.09 -7.87 6.11 -2.38 -0.01 -7.89 16 43 H 0.16 -12.51 5.99 -2.39 -0.01 -12.52 16 44 H 0.38 -22.91 5.61 -36.55 -0.20 -23.12 16 45 H 0.12 -9.52 6.41 -2.39 -0.02 -9.53 16 46 H 0.10 -7.69 6.59 -2.39 -0.02 -7.70 16 47 H 0.05 -2.56 8.14 -2.39 -0.02 -2.57 16 48 H 0.11 -5.88 4.89 7.38 0.04 -5.84 16 49 H 0.06 -3.01 8.14 -2.38 -0.02 -3.03 16 50 H 0.03 -1.47 8.14 -2.39 -0.02 -1.49 16 51 H 0.05 -2.58 8.14 -2.39 -0.02 -2.60 16 52 H 0.09 -5.25 3.71 3.73 0.01 -5.24 16 53 H 0.11 -8.17 6.02 -2.39 -0.01 -8.19 16 54 H 0.09 -6.27 5.65 -2.38 -0.01 -6.28 16 Total: 2.00 -186.47 326.00 3.67 -182.80 By element: Atomic # 1 Polarization: -331.60 SS G_CDS: 0.28 Total: -331.32 kcal Atomic # 6 Polarization: 104.09 SS G_CDS: 4.01 Total: 108.09 kcal Atomic # 7 Polarization: 68.56 SS G_CDS: -1.13 Total: 67.43 kcal Atomic # 8 Polarization: 31.51 SS G_CDS: -1.13 Total: 30.38 kcal Atomic # 14 Polarization: -59.03 SS G_CDS: 1.64 Total: -57.39 kcal Total: -186.47 3.67 -182.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692190710.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 400.505 kcal (2) G-P(sol) polarization free energy of solvation -186.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -182.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 217.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds