Wall clock time and date at job start Mon Mar 23 2020 11:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35996 * 117.00001 * 2 1 4 4 C 1.38403 * 119.96728 * 359.97438 * 3 2 1 5 5 C 1.39628 * 119.93552 * 180.02562 * 4 3 2 6 6 C 1.47585 * 120.06622 * 180.02562 * 5 4 3 7 7 C 1.33630 * 119.99936 * 64.99794 * 6 5 4 8 8 N 1.38471 * 119.99725 * 142.53066 * 7 6 5 9 9 C 1.46497 * 120.00268 * 324.08171 * 8 7 6 10 10 C 1.46500 * 119.99724 * 144.08013 * 8 7 6 11 11 C 1.50697 * 119.99476 * 244.99547 * 6 5 4 12 12 O 1.42903 * 109.46536 * 171.88748 * 11 6 5 13 13 Si 1.86297 * 109.47239 * 51.89016 * 11 6 5 14 14 H 1.48506 * 109.47083 * 59.99813 * 13 11 6 15 15 H 1.48501 * 109.47251 * 179.97438 * 13 11 6 16 16 H 1.48495 * 109.47299 * 299.99691 * 13 11 6 17 17 C 1.39630 * 119.86687 * 0.27444 * 5 4 3 18 18 C 1.38414 * 119.92933 * 359.44879 * 17 5 4 19 19 O 1.35994 * 119.96174 * 180.27667 * 18 17 5 20 20 C 1.42895 * 117.00328 * 0.27811 * 19 18 17 21 21 C 1.39071 * 120.07023 * 0.55378 * 18 17 5 22 22 O 1.36118 * 119.93727 * 179.69712 * 21 18 17 23 23 C 1.42891 * 117.00276 * 270.02248 * 22 21 18 24 24 H 1.08999 * 109.47015 * 60.00074 * 1 2 3 25 25 H 1.09004 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47159 * 300.00009 * 1 2 3 27 27 H 1.08003 * 120.03436 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.00442 * 322.53378 * 7 6 5 29 29 H 1.08996 * 109.47360 * 173.49850 * 9 8 7 30 30 H 1.09009 * 109.46921 * 53.49728 * 9 8 7 31 31 H 1.09004 * 109.46718 * 293.50167 * 9 8 7 32 32 H 1.08997 * 109.47123 * 179.97438 * 10 8 7 33 33 H 1.08997 * 109.47101 * 300.00030 * 10 8 7 34 34 H 1.08997 * 109.47106 * 59.99861 * 10 8 7 35 35 H 1.08996 * 109.47804 * 291.88776 * 11 6 5 36 36 H 0.96706 * 113.99845 * 85.75493 * 12 11 6 37 37 H 1.07999 * 120.03623 * 179.70615 * 17 5 4 38 38 H 1.09003 * 109.47343 * 299.99764 * 20 19 18 39 39 H 1.08994 * 109.47375 * 59.99849 * 20 19 18 40 40 H 1.09003 * 109.47158 * 180.02562 * 20 19 18 41 41 H 1.09004 * 109.47334 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.47186 * 299.99936 * 23 22 21 43 43 H 1.09006 * 109.47176 * 60.00363 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2920 2.3720 -0.0005 5 6 1.9266 3.6158 -0.0011 6 6 1.1249 4.8549 -0.0011 7 6 0.3517 5.1504 1.0480 8 7 0.2273 6.4640 1.4681 9 6 1.3770 7.3689 1.3936 10 6 -1.0541 6.9488 1.9871 11 6 1.1784 5.7868 -1.1841 12 8 0.1867 6.8047 -1.0338 13 14 0.8508 4.8264 -2.7465 14 1 -0.4937 4.2003 -2.6700 15 1 0.9029 5.7449 -3.9123 16 1 1.8813 3.7687 -2.9027 17 6 3.3212 3.6849 -0.0069 18 6 4.0703 2.5210 -0.0005 19 8 5.4286 2.5875 -0.0005 20 6 6.0143 3.8909 -0.0010 21 6 3.4354 1.2836 0.0000 22 8 4.1747 0.1408 0.0000 23 6 4.5271 -0.4040 -1.2731 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.2134 2.3156 -0.0005 28 1 -0.1762 4.3649 1.5682 29 1 1.0619 8.3790 1.6554 30 1 1.7777 7.3645 0.3799 31 1 2.1467 7.0364 2.0901 32 1 -0.9594 7.9982 2.2661 33 1 -1.8201 6.8444 1.2188 34 1 -1.3358 6.3643 2.8629 35 1 2.1651 6.2465 -1.2404 36 1 0.4785 7.5640 -0.5109 37 1 3.8148 4.6454 -0.0121 38 1 5.6947 4.4326 -0.8912 39 1 5.6945 4.4333 0.8887 40 1 7.1006 3.8011 -0.0014 41 1 5.1145 -1.3111 -1.1303 42 1 3.6208 -0.6415 -1.8301 43 1 5.1154 0.3253 -1.8302 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058503549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:52 Heat of formation + Delta-G solvation = -69.407426 kcal Electronic energy + Delta-G solvation = -25809.051603 eV Core-core repulsion = 22131.055457 eV Total energy + Delta-G solvation = -3677.996145 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67056 -40.01772 -39.88372 -38.50591 -37.34660 -36.67596 -33.51436 -30.56331 -30.29894 -29.23229 -28.74000 -27.93664 -27.64903 -26.82925 -24.48018 -22.96224 -22.67890 -20.31534 -19.17252 -18.72545 -18.09450 -17.92173 -17.38936 -17.09648 -17.07592 -16.42219 -16.39312 -16.21327 -15.81547 -15.75420 -15.57784 -15.33071 -15.08039 -14.24216 -14.22730 -13.95835 -13.68413 -13.45262 -13.33490 -13.22600 -13.01636 -12.91483 -12.63029 -12.49622 -12.42735 -12.31502 -12.07938 -11.91788 -11.80059 -11.44034 -10.82509 -10.70739 -10.35737 -9.07828 -9.05769 -8.11046 0.18230 0.49553 0.78689 1.45952 1.66497 1.73817 1.93757 2.13682 2.28240 2.56808 2.75894 3.13269 3.56122 3.93755 3.95560 4.05134 4.11563 4.16119 4.19460 4.19662 4.22636 4.24534 4.27954 4.36209 4.37190 4.41769 4.52569 4.56753 4.59403 4.63056 4.64953 4.65016 4.67200 4.77991 4.93401 4.97999 5.23270 5.29614 5.41530 5.46809 5.61936 6.17382 6.21940 6.37441 6.49661 6.58640 6.89863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.303 6.303 3 C 0.153 3.847 4 C -0.234 4.234 5 C 0.063 3.937 6 C -0.276 4.276 7 C 0.197 3.803 8 N -0.630 5.630 9 C 0.088 3.912 10 C 0.090 3.910 11 C -0.053 4.053 12 O -0.545 6.545 13 Si 1.008 2.992 14 H -0.252 1.252 15 H -0.260 1.260 16 H -0.249 1.249 17 C -0.227 4.227 18 C 0.153 3.847 19 O -0.303 6.303 20 C 0.025 3.975 21 C 0.020 3.980 22 O -0.313 6.313 23 C 0.035 3.965 24 H 0.057 0.943 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.361 0.639 37 H 0.134 0.866 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 4.385 0.588 4.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.106 3.894 4 C -0.253 4.253 5 C 0.062 3.938 6 C -0.285 4.285 7 C 0.076 3.924 8 N -0.342 5.342 9 C -0.055 4.055 10 C -0.053 4.053 11 C -0.161 4.161 12 O -0.353 6.353 13 Si 0.826 3.174 14 H -0.175 1.175 15 H -0.184 1.184 16 H -0.173 1.173 17 C -0.246 4.246 18 C 0.107 3.893 19 O -0.215 6.215 20 C -0.070 4.070 21 C -0.026 4.026 22 O -0.229 6.229 23 C -0.060 4.060 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.077 0.923 27 H 0.154 0.846 28 H 0.136 0.864 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.212 0.788 37 H 0.152 0.848 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.322 3.237 -0.258 3.506 hybrid contribution 0.087 1.214 0.626 1.368 sum -1.235 4.451 0.367 4.634 Atomic orbital electron populations 1.23155 0.77987 1.04324 1.01624 1.86165 1.21503 1.25860 1.88038 1.18902 0.90580 0.84984 0.94891 1.21320 1.00267 0.90858 1.12888 1.17950 0.91379 0.91282 0.93171 1.20101 1.12568 0.99057 0.96765 1.20797 0.94171 0.85282 0.92181 1.46410 1.10878 1.10528 1.66368 1.21842 0.88787 0.93427 1.01395 1.21722 0.85278 0.99672 0.98659 1.24890 0.93629 0.92811 1.04804 1.86718 1.41259 1.31314 1.76006 0.84557 0.81452 0.77985 0.73386 1.17510 1.18440 1.17279 1.21082 0.93607 0.97034 1.12925 1.18845 0.82958 0.92504 0.95028 1.86168 1.16398 1.30887 1.88081 1.23139 0.99250 0.83108 1.01514 1.17007 0.86435 0.84822 1.14290 1.86178 1.70321 1.37566 1.28833 1.22983 0.99516 0.98506 0.84959 0.92417 0.87873 0.92322 0.84583 0.86418 0.90645 0.92665 0.92421 0.91104 0.92519 0.92840 0.92243 0.78806 0.84794 0.92488 0.92382 0.87904 0.88985 0.93782 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.99 16 2 O -0.30 -1.18 10.27 -34.51 -0.35 -1.54 16 3 C 0.15 0.66 6.69 -39.21 -0.26 0.40 16 4 C -0.23 -0.59 8.61 -39.00 -0.34 -0.92 16 5 C 0.06 0.13 3.83 -105.05 -0.40 -0.27 16 6 C -0.28 -0.24 3.93 -102.43 -0.40 -0.64 16 7 C 0.20 0.05 9.24 -16.16 -0.15 -0.10 16 8 N -0.63 0.77 2.06 -190.18 -0.39 0.38 16 9 C 0.09 -0.26 8.91 59.85 0.53 0.28 16 10 C 0.09 -0.22 10.78 59.85 0.65 0.43 16 11 C -0.05 -0.03 1.85 36.00 0.07 0.03 16 12 O -0.54 -0.54 11.10 -35.23 -0.39 -0.93 16 13 Si 1.01 1.99 27.44 -169.99 -4.66 -2.68 16 14 H -0.25 -0.78 7.11 56.52 0.40 -0.38 16 15 H -0.26 -0.68 7.11 56.52 0.40 -0.27 16 16 H -0.25 -0.64 7.11 56.52 0.40 -0.23 16 17 C -0.23 -0.50 8.75 -39.00 -0.34 -0.84 16 18 C 0.15 0.64 6.69 -39.21 -0.26 0.37 16 19 O -0.30 -1.11 10.27 -34.50 -0.35 -1.47 16 20 C 0.02 -0.02 9.81 101.05 0.99 0.97 16 21 C 0.02 0.11 5.75 -38.96 -0.22 -0.12 16 22 O -0.31 -1.99 9.96 -45.54 -0.45 -2.44 16 23 C 0.03 0.11 11.13 101.05 1.13 1.24 16 24 H 0.06 -0.07 7.66 -51.93 -0.40 -0.46 16 25 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 26 H 0.06 -0.08 7.66 -51.93 -0.40 -0.47 16 27 H 0.14 0.09 6.28 -52.48 -0.33 -0.24 16 28 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 29 H 0.07 -0.34 7.57 -51.93 -0.39 -0.73 16 30 H 0.06 -0.17 4.41 -51.92 -0.23 -0.40 16 31 H 0.06 -0.14 8.14 -51.93 -0.42 -0.56 16 32 H 0.07 -0.26 7.56 -51.93 -0.39 -0.66 16 33 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.05 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.06 -0.07 7.36 -51.93 -0.38 -0.45 16 36 H 0.36 -0.49 5.38 45.56 0.25 -0.24 16 37 H 0.13 0.00 6.28 -52.49 -0.33 -0.33 16 38 H 0.06 -0.11 7.65 -51.93 -0.40 -0.50 16 39 H 0.06 -0.09 7.67 -51.93 -0.40 -0.49 16 40 H 0.10 -0.23 8.14 -51.93 -0.42 -0.66 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 42 H 0.04 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.04 0.12 8.14 -51.93 -0.42 -0.31 16 LS Contribution 346.88 15.07 5.23 5.23 Total: 0.00 -6.40 346.88 -5.41 -11.81 By element: Atomic # 1 Polarization: -4.17 SS G_CDS: -6.00 Total: -10.17 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 1.97 Total: 1.81 kcal Atomic # 7 Polarization: 0.77 SS G_CDS: -0.39 Total: 0.38 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -1.55 Total: -6.38 kcal Atomic # 14 Polarization: 1.99 SS G_CDS: -4.66 Total: -2.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -6.40 -5.41 -11.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058503549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.592 kcal (2) G-P(sol) polarization free energy of solvation -6.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds