Wall clock time and date at job start Mon Mar 23 2020 11:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46768 * 2 1 4 4 C 1.53001 * 109.46988 * 240.00610 * 2 1 3 5 5 C 1.50696 * 109.47326 * 120.00197 * 2 1 3 6 6 C 1.32579 * 120.00006 * 7.91264 * 5 2 1 7 7 C 1.47803 * 119.99986 * 43.82098 * 6 5 2 8 8 C 1.39509 * 120.14679 * 351.66254 * 7 6 5 9 9 C 1.37993 * 119.86473 * 179.97438 * 8 7 6 10 10 C 1.38331 * 120.16399 * 0.02562 * 9 8 7 11 11 C 1.38341 * 120.29624 * 359.97438 * 10 9 8 12 12 C 1.38054 * 120.13358 * 359.97438 * 11 10 9 13 13 Br 1.89103 * 120.08363 * 180.02562 * 12 11 10 14 14 C 1.50693 * 120.00072 * 187.90704 * 5 2 1 15 15 O 1.42904 * 109.47166 * 80.97818 * 14 5 2 16 16 Si 1.86296 * 109.47504 * 320.97866 * 14 5 2 17 17 H 1.48504 * 109.47409 * 90.32146 * 16 14 5 18 18 H 1.48496 * 109.47525 * 210.32797 * 16 14 5 19 19 H 1.48503 * 109.46977 * 330.32654 * 16 14 5 20 20 H 1.08996 * 109.47540 * 357.91378 * 1 2 3 21 21 H 1.09002 * 109.47310 * 117.91689 * 1 2 3 22 22 H 1.09001 * 109.47111 * 237.91117 * 1 2 3 23 23 H 1.08997 * 109.46866 * 172.21055 * 3 2 1 24 24 H 1.08997 * 109.47259 * 292.21523 * 3 2 1 25 25 H 1.09001 * 109.46762 * 52.21872 * 3 2 1 26 26 H 1.08997 * 109.46987 * 258.78016 * 4 2 1 27 27 H 1.09005 * 109.47213 * 18.77488 * 4 2 1 28 28 H 1.08997 * 109.47159 * 138.77573 * 4 2 1 29 29 H 1.07995 * 119.99938 * 223.82288 * 6 5 2 30 30 H 1.07998 * 120.06505 * 359.95300 * 8 7 6 31 31 H 1.07997 * 119.91961 * 180.02562 * 9 8 7 32 32 H 1.07999 * 119.85267 * 180.28431 * 10 9 8 33 33 H 1.08005 * 119.93679 * 180.02562 * 11 10 9 34 34 H 1.09003 * 109.47620 * 200.97653 * 14 5 2 35 35 H 0.96701 * 113.99803 * 293.24600 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1812 -1.3494 2.0209 7 6 0.1239 -2.1997 1.4346 8 6 -0.0932 -2.1973 0.0565 9 6 -1.0816 -2.9939 -0.4847 10 6 -1.8570 -3.7934 0.3357 11 6 -1.6474 -3.8009 1.7031 12 6 -0.6613 -3.0097 2.2575 13 35 -0.3756 -3.0216 4.1268 14 6 3.5022 -0.6947 1.5622 15 8 3.8319 0.5374 2.2066 16 14 4.4947 -0.8604 -0.0057 17 1 4.7811 0.4892 -0.5553 18 1 5.7729 -1.5565 0.2887 19 1 3.7210 -1.6459 -1.0006 20 1 -0.3634 1.0269 0.0374 21 1 -0.3634 -0.4811 -0.9081 22 1 -0.3633 -0.5459 0.8707 23 1 3.1210 1.4457 0.1393 24 1 1.7947 1.9146 -0.9513 25 1 1.5674 1.9949 0.8122 26 1 2.3496 -1.7320 -0.9844 27 1 1.2437 -0.7680 -1.9923 28 1 2.8898 -0.1771 -1.6614 29 1 1.2603 -1.2485 3.0932 30 1 0.5107 -1.5731 -0.5853 31 1 -1.2502 -2.9931 -1.5514 32 1 -2.6260 -4.4183 -0.0937 33 1 -2.2559 -4.4277 2.3382 34 1 3.7334 -1.5262 2.2281 35 1 3.7498 1.3139 1.6361 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829121905.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:01 Heat of formation + Delta-G solvation = 104.383106 kcal Electronic energy + Delta-G solvation = -17823.041069 eV Core-core repulsion = 15145.310769 eV Total energy + Delta-G solvation = -2677.730300 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 298.044 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.28805 -39.29331 -37.26896 -34.39848 -33.19851 -31.80074 -30.08571 -29.04387 -28.27427 -26.52551 -23.63768 -22.95274 -22.26223 -19.47259 -18.29327 -17.45316 -17.38628 -16.67820 -16.13554 -15.98068 -15.45775 -15.21321 -14.95387 -14.78337 -14.48960 -13.98678 -13.78507 -13.64838 -13.25379 -13.00251 -12.77629 -12.50622 -12.40190 -12.32962 -11.88005 -11.71389 -11.55836 -11.38076 -11.03926 -10.74889 -10.34764 -10.26094 -9.58373 -8.71213 -0.47870 0.23332 0.71206 0.92335 1.18950 1.38341 1.39347 1.92047 2.69066 3.36691 3.44945 3.52530 3.61776 3.71429 3.81156 3.96271 4.05331 4.20994 4.29272 4.30602 4.35825 4.48604 4.49591 4.62503 4.66980 4.76576 4.78139 4.84158 4.91821 4.96945 5.06577 5.13289 5.18396 5.26908 5.41235 5.51399 5.67610 5.80345 6.51402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.042 4.042 3 C -0.147 4.147 4 C -0.189 4.189 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.036 4.036 8 C -0.126 4.126 9 C -0.125 4.125 10 C -0.108 4.108 11 C -0.101 4.101 12 C -0.081 4.081 13 Br -0.047 7.047 14 C -0.080 4.080 15 O -0.541 6.541 16 Si 0.904 3.096 17 H -0.248 1.248 18 H -0.259 1.259 19 H -0.198 1.198 20 H 0.055 0.945 21 H 0.073 0.927 22 H 0.095 0.905 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.178 0.822 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.767 0.389 -3.999 4.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.042 4.042 3 C -0.204 4.204 4 C -0.245 4.245 5 C -0.126 4.126 6 C -0.129 4.129 7 C -0.038 4.038 8 C -0.143 4.143 9 C -0.143 4.143 10 C -0.127 4.127 11 C -0.121 4.121 12 C -0.161 4.161 13 Br 0.039 6.961 14 C -0.190 4.190 15 O -0.349 6.349 16 Si 0.726 3.274 17 H -0.172 1.172 18 H -0.184 1.184 19 H -0.121 1.121 20 H 0.073 0.927 21 H 0.092 0.908 22 H 0.113 0.887 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.157 0.843 30 H 0.194 0.806 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.085 -0.090 -3.547 3.549 hybrid contribution -0.559 0.446 -0.244 0.756 sum -0.644 0.356 -3.791 3.862 Atomic orbital electron populations 1.23566 0.93239 1.02739 1.04162 1.19820 0.96535 0.95164 0.92716 1.22138 1.00586 0.94179 1.03468 1.23273 1.02470 1.01530 0.97185 1.22491 0.95333 0.98593 0.96228 1.21640 0.93741 0.97592 0.99901 1.18862 0.95418 0.96652 0.92891 1.23060 0.99315 0.96954 0.94998 1.21208 0.96493 0.96367 1.00273 1.21248 0.99547 0.98950 0.92909 1.21031 0.96876 0.98507 0.95676 1.21965 1.00569 1.03101 0.90449 1.96739 1.96367 1.98266 1.04698 1.25314 0.94306 0.90483 1.08864 1.86588 1.91118 1.15454 1.41734 0.87070 0.79611 0.83123 0.77630 1.17187 1.18409 1.12094 0.92651 0.90825 0.88681 0.92629 0.90920 0.91109 0.89333 0.90701 0.91466 0.84339 0.80567 0.85345 0.85203 0.84974 0.86564 0.78028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.19 7.32 37.16 0.27 0.46 16 2 C -0.04 0.06 0.50 -155.66 -0.08 -0.02 16 3 C -0.15 0.32 6.96 37.16 0.26 0.58 16 4 C -0.19 0.41 5.53 37.16 0.21 0.61 16 5 C -0.13 0.01 3.69 -101.26 -0.37 -0.36 16 6 C -0.11 -0.11 7.96 -37.58 -0.30 -0.41 16 7 C -0.04 -0.04 4.44 -104.99 -0.47 -0.51 16 8 C -0.13 0.01 5.71 -39.20 -0.22 -0.21 16 9 C -0.13 0.08 10.02 -39.64 -0.40 -0.32 16 10 C -0.11 0.03 10.04 -39.51 -0.40 -0.37 16 11 C -0.10 -0.09 9.78 -39.61 -0.39 -0.47 16 12 C -0.08 -0.14 6.25 -39.13 -0.24 -0.39 16 13 Br -0.05 -0.09 31.93 -68.01 -2.17 -2.26 16 14 C -0.08 0.00 2.74 36.00 0.10 0.10 16 15 O -0.54 -0.57 12.91 -35.23 -0.45 -1.03 16 16 Si 0.90 -0.66 22.38 -169.99 -3.80 -4.46 16 17 H -0.25 0.18 6.55 56.52 0.37 0.55 16 18 H -0.26 -0.32 7.11 56.52 0.40 0.08 16 19 H -0.20 0.38 3.88 56.52 0.22 0.60 16 20 H 0.05 -0.06 7.57 -51.93 -0.39 -0.45 16 21 H 0.07 -0.14 5.26 -51.93 -0.27 -0.42 16 22 H 0.10 0.04 3.39 -51.97 -0.18 -0.14 16 23 H 0.06 -0.15 3.42 -51.93 -0.18 -0.32 16 24 H 0.07 -0.21 8.13 -51.93 -0.42 -0.63 16 25 H 0.07 -0.14 8.09 -51.93 -0.42 -0.56 16 26 H 0.09 -0.17 4.90 -51.93 -0.25 -0.43 16 27 H 0.07 -0.24 6.82 -51.93 -0.35 -0.60 16 28 H 0.07 -0.17 5.38 -51.93 -0.28 -0.45 16 29 H 0.14 0.22 6.76 -52.49 -0.35 -0.14 16 30 H 0.18 -0.27 0.99 -59.45 -0.06 -0.33 16 31 H 0.13 -0.35 8.06 -52.49 -0.42 -0.77 16 32 H 0.13 -0.28 8.06 -52.49 -0.42 -0.70 16 33 H 0.13 -0.04 8.06 -52.48 -0.42 -0.46 16 34 H 0.12 -0.02 7.83 -51.93 -0.41 -0.43 16 35 H 0.37 -0.57 5.71 45.56 0.26 -0.31 16 LS Contribution 264.11 15.07 3.98 3.98 Total: 0.00 -2.92 264.11 -8.07 -10.99 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: -3.59 Total: -5.90 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.03 Total: -1.32 kcal Atomic # 8 Polarization: -0.57 SS G_CDS: -0.45 Total: -1.03 kcal Atomic # 14 Polarization: -0.66 SS G_CDS: -3.80 Total: -4.46 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.17 Total: -2.26 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -2.92 -8.07 -10.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829121905.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.371 kcal (2) G-P(sol) polarization free energy of solvation -2.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds