Wall clock time and date at job start Mon Mar 23 2020 11:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46768 * 2 1 4 4 C 1.53001 * 109.46988 * 240.00610 * 2 1 3 5 5 C 1.50696 * 109.47326 * 120.00197 * 2 1 3 6 6 C 1.32579 * 120.00006 * 7.91264 * 5 2 1 7 7 C 1.47803 * 119.99986 * 43.82098 * 6 5 2 8 8 C 1.39509 * 120.14679 * 351.66254 * 7 6 5 9 9 C 1.37993 * 119.86473 * 179.97438 * 8 7 6 10 10 C 1.38331 * 120.16399 * 0.02562 * 9 8 7 11 11 C 1.38341 * 120.29624 * 359.97438 * 10 9 8 12 12 C 1.38054 * 120.13358 * 359.97438 * 11 10 9 13 13 Br 1.89103 * 120.08363 * 180.02562 * 12 11 10 14 14 C 1.50693 * 120.00072 * 187.90704 * 5 2 1 15 15 O 1.42904 * 109.47166 * 80.97818 * 14 5 2 16 16 Si 1.86296 * 109.47504 * 320.97866 * 14 5 2 17 17 H 1.48504 * 109.47409 * 90.32146 * 16 14 5 18 18 H 1.48496 * 109.47525 * 210.32797 * 16 14 5 19 19 H 1.48503 * 109.46977 * 330.32654 * 16 14 5 20 20 H 1.08996 * 109.47540 * 357.91378 * 1 2 3 21 21 H 1.09002 * 109.47310 * 117.91689 * 1 2 3 22 22 H 1.09001 * 109.47111 * 237.91117 * 1 2 3 23 23 H 1.08997 * 109.46866 * 172.21055 * 3 2 1 24 24 H 1.08997 * 109.47259 * 292.21523 * 3 2 1 25 25 H 1.09001 * 109.46762 * 52.21872 * 3 2 1 26 26 H 1.08997 * 109.46987 * 258.78016 * 4 2 1 27 27 H 1.09005 * 109.47213 * 18.77488 * 4 2 1 28 28 H 1.08997 * 109.47159 * 138.77573 * 4 2 1 29 29 H 1.07995 * 119.99938 * 223.82288 * 6 5 2 30 30 H 1.07998 * 120.06505 * 359.95300 * 8 7 6 31 31 H 1.07997 * 119.91961 * 180.02562 * 9 8 7 32 32 H 1.07999 * 119.85267 * 180.28431 * 10 9 8 33 33 H 1.08005 * 119.93679 * 180.02562 * 11 10 9 34 34 H 1.09003 * 109.47620 * 200.97653 * 14 5 2 35 35 H 0.96701 * 113.99803 * 293.24600 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1812 -1.3494 2.0209 7 6 0.1239 -2.1997 1.4346 8 6 -0.0932 -2.1973 0.0565 9 6 -1.0816 -2.9939 -0.4847 10 6 -1.8570 -3.7934 0.3357 11 6 -1.6474 -3.8009 1.7031 12 6 -0.6613 -3.0097 2.2575 13 35 -0.3756 -3.0216 4.1268 14 6 3.5022 -0.6947 1.5622 15 8 3.8319 0.5374 2.2066 16 14 4.4947 -0.8604 -0.0057 17 1 4.7811 0.4892 -0.5553 18 1 5.7729 -1.5565 0.2887 19 1 3.7210 -1.6459 -1.0006 20 1 -0.3634 1.0269 0.0374 21 1 -0.3634 -0.4811 -0.9081 22 1 -0.3633 -0.5459 0.8707 23 1 3.1210 1.4457 0.1393 24 1 1.7947 1.9146 -0.9513 25 1 1.5674 1.9949 0.8122 26 1 2.3496 -1.7320 -0.9844 27 1 1.2437 -0.7680 -1.9923 28 1 2.8898 -0.1771 -1.6614 29 1 1.2603 -1.2485 3.0932 30 1 0.5107 -1.5731 -0.5853 31 1 -1.2502 -2.9931 -1.5514 32 1 -2.6260 -4.4183 -0.0937 33 1 -2.2559 -4.4277 2.3382 34 1 3.7334 -1.5262 2.2281 35 1 3.7498 1.3139 1.6361 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829121905.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:01 Heat of formation + Delta-G solvation = 111.886165 kcal Electronic energy + Delta-G solvation = -17822.715712 eV Core-core repulsion = 15145.310769 eV Total energy + Delta-G solvation = -2677.404943 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 298.044 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.22701 -39.25680 -37.27569 -34.35824 -33.18283 -31.79148 -30.09961 -28.86700 -28.16307 -26.51653 -23.60070 -22.90898 -22.20379 -19.43777 -18.24965 -17.41956 -17.31859 -16.67182 -16.08983 -15.92288 -15.38099 -15.14917 -14.89142 -14.71846 -14.46601 -13.93443 -13.68003 -13.57014 -13.18593 -12.93678 -12.66289 -12.39147 -12.38278 -12.24570 -11.87153 -11.63100 -11.53491 -11.33126 -11.08580 -10.72067 -10.26670 -10.24804 -9.57556 -8.70340 -0.46621 0.24973 0.65536 0.94542 1.20981 1.41241 1.46694 1.96440 2.71609 3.42893 3.51069 3.60300 3.70713 3.83927 3.86269 4.05985 4.14229 4.26852 4.36915 4.42626 4.51557 4.59899 4.64187 4.69113 4.73399 4.88654 4.93852 4.94202 5.02810 5.07613 5.18190 5.25599 5.28267 5.36510 5.45374 5.54615 5.68322 5.86493 6.59903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.041 4.041 3 C -0.150 4.150 4 C -0.197 4.197 5 C -0.115 4.115 6 C -0.128 4.128 7 C -0.044 4.044 8 C -0.128 4.128 9 C -0.126 4.126 10 C -0.112 4.112 11 C -0.114 4.114 12 C -0.101 4.101 13 Br -0.061 7.061 14 C -0.090 4.090 15 O -0.559 6.559 16 Si 0.923 3.077 17 H -0.242 1.242 18 H -0.292 1.292 19 H -0.170 1.170 20 H 0.055 0.945 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.192 0.808 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.109 0.891 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 0.636 -6.042 6.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.041 4.041 3 C -0.206 4.206 4 C -0.253 4.253 5 C -0.116 4.116 6 C -0.147 4.147 7 C -0.046 4.046 8 C -0.145 4.145 9 C -0.144 4.144 10 C -0.131 4.131 11 C -0.134 4.134 12 C -0.180 4.180 13 Br 0.025 6.975 14 C -0.199 4.199 15 O -0.368 6.368 16 Si 0.744 3.256 17 H -0.166 1.166 18 H -0.219 1.219 19 H -0.093 1.093 20 H 0.074 0.926 21 H 0.106 0.894 22 H 0.098 0.902 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.142 0.858 30 H 0.208 0.792 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.154 0.846 34 H 0.127 0.873 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.427 0.169 -5.591 5.610 hybrid contribution -0.442 0.393 0.422 0.727 sum -0.868 0.562 -5.169 5.271 Atomic orbital electron populations 1.23562 0.93454 1.02673 1.04107 1.19843 0.96344 0.95506 0.92451 1.22179 1.00803 0.93614 1.04048 1.23342 1.03596 1.01300 0.97052 1.22625 0.94877 0.97427 0.96659 1.21571 0.94706 0.98952 0.99452 1.18967 0.95403 0.96586 0.93624 1.23277 0.99665 0.97153 0.94447 1.21558 0.95758 0.95498 1.01568 1.21538 0.99988 0.99152 0.92423 1.21209 0.96906 0.98704 0.96567 1.22100 1.01687 1.04318 0.89939 1.96700 1.96486 1.98344 1.05983 1.25513 0.94805 0.89954 1.09583 1.86561 1.91238 1.16237 1.42794 0.86923 0.77804 0.83388 0.77443 1.16567 1.21855 1.09277 0.92629 0.89424 0.90214 0.92212 0.89608 0.91589 0.89488 0.88875 0.90524 0.85807 0.79192 0.82777 0.83255 0.84587 0.87312 0.76875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.51 7.32 71.98 0.53 1.04 16 2 C -0.04 0.15 0.50 -52.93 -0.03 0.13 16 3 C -0.15 0.79 6.96 71.98 0.50 1.29 16 4 C -0.20 1.26 5.53 71.98 0.40 1.66 16 5 C -0.12 -0.03 3.69 -17.61 -0.07 -0.10 16 6 C -0.13 -0.44 7.96 23.65 0.19 -0.25 16 7 C -0.04 -0.14 4.44 -20.10 -0.09 -0.23 16 8 C -0.13 0.12 5.71 22.52 0.13 0.25 16 9 C -0.13 0.33 10.02 22.23 0.22 0.55 16 10 C -0.11 0.13 10.04 22.32 0.22 0.36 16 11 C -0.11 -0.26 9.78 22.25 0.22 -0.05 16 12 C -0.10 -0.49 6.25 22.56 0.14 -0.34 16 13 Br -0.06 -0.35 31.93 -20.37 -0.65 -1.00 16 14 C -0.09 -0.07 2.74 71.23 0.20 0.12 16 15 O -0.56 -1.71 12.91 -148.98 -1.92 -3.64 16 16 Si 0.92 -1.60 22.38 68.60 1.54 -0.06 16 17 H -0.24 0.65 6.55 99.48 0.65 1.30 16 18 H -0.29 -1.08 7.11 99.48 0.71 -0.37 16 19 H -0.17 0.95 3.88 99.48 0.39 1.34 16 20 H 0.05 -0.15 7.57 -2.39 -0.02 -0.17 16 21 H 0.09 -0.51 5.26 -2.39 -0.01 -0.52 16 22 H 0.08 0.09 3.39 -2.42 -0.01 0.08 16 23 H 0.06 -0.37 3.42 -2.39 -0.01 -0.38 16 24 H 0.09 -0.65 8.13 -2.39 -0.02 -0.67 16 25 H 0.07 -0.27 8.09 -2.39 -0.02 -0.29 16 26 H 0.09 -0.51 4.90 -2.39 -0.01 -0.52 16 27 H 0.09 -0.89 6.82 -2.38 -0.02 -0.91 16 28 H 0.08 -0.59 5.38 -2.39 -0.01 -0.60 16 29 H 0.12 0.72 6.76 -2.91 -0.02 0.70 16 30 H 0.19 -0.86 0.99 -9.45 -0.01 -0.87 16 31 H 0.15 -1.25 8.06 -2.91 -0.02 -1.28 16 32 H 0.15 -0.85 8.06 -2.91 -0.02 -0.88 16 33 H 0.14 0.06 8.06 -2.91 -0.02 0.03 16 34 H 0.11 0.17 7.83 -2.39 -0.02 0.15 16 35 H 0.38 -1.02 5.71 -74.06 -0.42 -1.44 16 Total: 0.00 -8.17 264.11 2.60 -5.57 By element: Atomic # 1 Polarization: -6.37 SS G_CDS: 1.08 Total: -5.30 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 2.56 Total: 4.43 kcal Atomic # 8 Polarization: -1.71 SS G_CDS: -1.92 Total: -3.64 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: 1.54 Total: -0.06 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -0.65 Total: -1.00 kcal Total: -8.17 2.60 -5.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829121905.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.451 kcal (2) G-P(sol) polarization free energy of solvation -8.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds