Wall clock time and date at job start Mon Mar 23 2020 11:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53010 * 109.46546 * 2 1 4 4 C 1.52994 * 109.47123 * 240.00719 * 2 1 3 5 5 C 1.50694 * 109.47539 * 119.99731 * 2 1 3 6 6 C 1.32572 * 119.99451 * 65.91242 * 5 2 1 7 7 C 1.47813 * 119.99884 * 316.59884 * 6 5 2 8 8 C 1.39517 * 120.13995 * 229.87243 * 7 6 5 9 9 C 1.38002 * 119.87636 * 179.74862 * 8 7 6 10 10 C 1.38309 * 120.15051 * 0.50740 * 9 8 7 11 11 C 1.38448 * 120.27539 * 359.77130 * 10 9 8 12 12 Br 1.89107 * 119.93674 * 179.97438 * 11 10 9 13 13 C 1.38042 * 120.12509 * 359.97341 * 11 10 9 14 14 C 1.50695 * 120.00279 * 245.91115 * 5 2 1 15 15 O 1.42898 * 109.47088 * 83.64033 * 14 5 2 16 16 Si 1.86298 * 109.46966 * 203.63729 * 14 5 2 17 17 H 1.48502 * 109.47207 * 60.00069 * 16 14 5 18 18 H 1.48504 * 109.47201 * 179.97438 * 16 14 5 19 19 H 1.48502 * 109.47313 * 299.99809 * 16 14 5 20 20 H 1.08995 * 109.47536 * 346.86916 * 1 2 3 21 21 H 1.08998 * 109.46780 * 106.87991 * 1 2 3 22 22 H 1.09004 * 109.46637 * 226.87326 * 1 2 3 23 23 H 1.09000 * 109.46810 * 181.88691 * 3 2 1 24 24 H 1.08999 * 109.46970 * 301.88518 * 3 2 1 25 25 H 1.09000 * 109.46501 * 61.88584 * 3 2 1 26 26 H 1.09005 * 109.46767 * 255.63576 * 4 2 1 27 27 H 1.09004 * 109.47640 * 15.63043 * 4 2 1 28 28 H 1.08998 * 109.47653 * 135.63994 * 4 2 1 29 29 H 1.07997 * 119.99947 * 136.33197 * 6 5 2 30 30 H 1.07998 * 120.06179 * 359.97438 * 8 7 6 31 31 H 1.07998 * 119.92536 * 180.23145 * 9 8 7 32 32 H 1.07998 * 119.85792 * 179.74042 * 10 9 8 33 33 H 1.08003 * 120.07878 * 179.97438 * 13 11 10 34 34 H 1.08994 * 109.47282 * 323.63851 * 14 5 2 35 35 H 0.96696 * 114.00057 * 305.20833 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0325 -0.7103 1.2304 6 6 1.8116 -2.0086 1.3828 7 6 0.4840 -2.5749 1.0640 8 6 -0.1635 -3.4023 1.9819 9 6 -1.4051 -3.9238 1.6807 10 6 -2.0037 -3.6365 0.4674 11 6 -1.3642 -2.8208 -0.4505 12 35 -2.1910 -2.4348 -2.1069 13 6 -0.1243 -2.2888 -0.1589 14 6 2.7859 0.0551 2.2875 15 8 1.8572 0.6916 3.1676 16 14 3.8574 -1.1190 3.2591 17 1 4.8225 -1.7805 2.3446 18 1 4.6004 -0.3647 4.3005 19 1 3.0041 -2.1476 3.9064 20 1 -0.3634 1.0007 0.2334 21 1 -0.3633 -0.2984 -0.9834 22 1 -0.3633 -0.7026 0.7501 23 1 3.1294 1.4429 -0.0338 24 1 1.6492 1.9661 -0.8726 25 1 1.7044 1.9465 0.9064 26 1 2.4015 -1.7121 -0.9746 27 1 1.2281 -0.8175 -1.9702 28 1 2.8539 -0.1477 -1.6931 29 1 2.6030 -2.6532 1.7358 30 1 0.3046 -3.6313 2.9279 31 1 -1.9087 -4.5614 2.3923 32 1 -2.9736 -4.0506 0.2349 33 1 0.3741 -1.6529 -0.8757 34 1 3.4122 0.8101 1.8125 35 1 1.2142 1.2573 2.7186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829131796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:03 Heat of formation + Delta-G solvation = 46.036761 kcal Electronic energy + Delta-G solvation = -17697.603237 eV Core-core repulsion = 15017.342850 eV Total energy + Delta-G solvation = -2680.260388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 298.044 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.78817 -39.20831 -37.11300 -34.40170 -32.99246 -31.92627 -30.07643 -28.67461 -28.10593 -26.55890 -23.45347 -23.10889 -22.34709 -19.24216 -18.18036 -17.81171 -16.96836 -16.55338 -15.96188 -15.87097 -15.39836 -15.31482 -14.87561 -14.79522 -14.20325 -14.11309 -13.81697 -13.50249 -13.32939 -12.71948 -12.55432 -12.41799 -12.23687 -12.18605 -12.04721 -11.98032 -11.67363 -11.60794 -11.23770 -11.16595 -10.90773 -10.03705 -9.57151 -8.98360 -0.19298 0.20772 0.61566 0.71432 1.19079 1.48536 1.57488 1.99658 2.60255 3.39279 3.57764 3.68728 3.71293 3.80886 3.94302 4.04658 4.13249 4.17754 4.30159 4.35176 4.42609 4.49201 4.54256 4.58029 4.63141 4.79194 4.84322 4.86703 4.96875 5.01570 5.10066 5.13483 5.24114 5.29994 5.32866 5.42398 5.59649 5.79413 6.49010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.034 4.034 3 C -0.143 4.143 4 C -0.154 4.154 5 C -0.124 4.124 6 C -0.122 4.122 7 C -0.057 4.057 8 C -0.087 4.087 9 C -0.121 4.121 10 C -0.086 4.086 11 C -0.110 4.110 12 Br -0.052 7.052 13 C -0.091 4.091 14 C -0.092 4.092 15 O -0.527 6.527 16 Si 1.003 2.997 17 H -0.249 1.249 18 H -0.255 1.255 19 H -0.250 1.250 20 H 0.058 0.942 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.168 0.832 34 H 0.074 0.926 35 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 0.482 -0.326 1.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.034 4.034 3 C -0.200 4.200 4 C -0.211 4.211 5 C -0.125 4.125 6 C -0.140 4.140 7 C -0.058 4.058 8 C -0.105 4.105 9 C -0.139 4.139 10 C -0.106 4.106 11 C -0.189 4.189 12 Br 0.033 6.967 13 C -0.109 4.109 14 C -0.200 4.200 15 O -0.333 6.333 16 Si 0.823 3.177 17 H -0.173 1.173 18 H -0.179 1.179 19 H -0.173 1.173 20 H 0.077 0.923 21 H 0.086 0.914 22 H 0.101 0.899 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.185 0.815 34 H 0.092 0.908 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.593 -0.250 -0.046 1.613 hybrid contribution -0.572 0.548 -0.443 0.908 sum 1.021 0.298 -0.489 1.171 Atomic orbital electron populations 1.23049 0.93869 1.02684 1.03174 1.19701 0.95885 0.95581 0.92198 1.22098 1.01356 0.94364 1.02226 1.22458 1.01741 1.00863 0.96020 1.22575 1.00146 0.94630 0.95103 1.21362 0.94178 0.94683 1.03813 1.18859 0.94402 0.98484 0.94044 1.21278 0.94989 0.95115 0.99126 1.21064 0.95483 1.00676 0.96710 1.21198 0.99900 0.96421 0.93088 1.21685 0.97971 1.05116 0.94105 1.96759 1.80578 1.94196 1.25168 1.22536 0.94099 0.96518 0.97764 1.25177 0.96627 1.02443 0.95764 1.86800 1.47438 1.65053 1.34034 0.84561 0.77049 0.77236 0.78884 1.17296 1.17913 1.17346 0.92336 0.91381 0.89854 0.91920 0.91793 0.92425 0.91503 0.91422 0.91412 0.85263 0.85152 0.84870 0.85075 0.81498 0.90791 0.78595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.11 7.36 37.16 0.27 0.38 16 2 C -0.03 0.04 0.75 -155.66 -0.12 -0.07 16 3 C -0.14 0.31 6.69 37.16 0.25 0.56 16 4 C -0.15 0.21 7.84 37.15 0.29 0.51 16 5 C -0.12 0.06 4.06 -101.26 -0.41 -0.35 16 6 C -0.12 -0.02 6.75 -37.57 -0.25 -0.27 16 7 C -0.06 -0.04 4.55 -105.02 -0.48 -0.52 16 8 C -0.09 -0.04 9.79 -39.19 -0.38 -0.42 16 9 C -0.12 -0.01 10.03 -39.64 -0.40 -0.41 16 10 C -0.09 -0.06 9.78 -39.48 -0.39 -0.45 16 11 C -0.11 -0.14 6.22 -39.58 -0.25 -0.38 16 12 Br -0.05 -0.06 33.59 -68.01 -2.28 -2.35 16 13 C -0.09 -0.07 4.98 -39.17 -0.20 -0.26 16 14 C -0.09 0.05 2.00 36.00 0.07 0.12 16 15 O -0.53 -0.22 12.68 -35.23 -0.45 -0.66 16 16 Si 1.00 0.10 25.77 -169.99 -4.38 -4.28 16 17 H -0.25 0.07 7.11 56.52 0.40 0.48 16 18 H -0.26 -0.37 7.11 56.52 0.40 0.04 16 19 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 20 H 0.06 -0.06 7.64 -51.93 -0.40 -0.46 16 21 H 0.07 -0.03 5.60 -51.93 -0.29 -0.32 16 22 H 0.08 0.05 4.27 -51.93 -0.22 -0.17 16 23 H 0.06 -0.15 7.30 -51.93 -0.38 -0.53 16 24 H 0.06 -0.14 8.14 -51.93 -0.42 -0.56 16 25 H 0.06 -0.15 6.31 -51.93 -0.33 -0.48 16 26 H 0.07 -0.06 6.55 -51.93 -0.34 -0.40 16 27 H 0.07 -0.10 6.21 -51.93 -0.32 -0.42 16 28 H 0.07 -0.13 7.65 -51.93 -0.40 -0.53 16 29 H 0.13 -0.10 5.83 -52.49 -0.31 -0.41 16 30 H 0.13 -0.11 8.06 -52.49 -0.42 -0.53 16 31 H 0.13 -0.25 8.06 -52.49 -0.42 -0.67 16 32 H 0.13 -0.06 8.06 -52.49 -0.42 -0.48 16 33 H 0.17 -0.03 1.67 -52.48 -0.09 -0.11 16 34 H 0.07 -0.14 6.10 -51.93 -0.32 -0.46 16 35 H 0.37 -0.78 7.65 45.56 0.35 -0.43 16 LS Contribution 279.23 15.07 4.21 4.21 Total: 0.00 -2.53 279.23 -8.41 -10.94 By element: Atomic # 1 Polarization: -2.76 SS G_CDS: -3.52 Total: -6.28 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.98 Total: -1.57 kcal Atomic # 8 Polarization: -0.22 SS G_CDS: -0.45 Total: -0.66 kcal Atomic # 14 Polarization: 0.10 SS G_CDS: -4.38 Total: -4.28 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -2.28 Total: -2.35 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -2.53 -8.41 -10.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829131796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.974 kcal (2) G-P(sol) polarization free energy of solvation -2.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds