Wall clock time and date at job start Mon Mar 23 2020 11:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53010 * 109.46546 * 2 1 4 4 C 1.52994 * 109.47123 * 240.00719 * 2 1 3 5 5 C 1.50694 * 109.47539 * 119.99731 * 2 1 3 6 6 C 1.32572 * 119.99451 * 65.91242 * 5 2 1 7 7 C 1.47813 * 119.99884 * 316.59884 * 6 5 2 8 8 C 1.39517 * 120.13995 * 229.87243 * 7 6 5 9 9 C 1.38002 * 119.87636 * 179.74862 * 8 7 6 10 10 C 1.38309 * 120.15051 * 0.50740 * 9 8 7 11 11 C 1.38448 * 120.27539 * 359.77130 * 10 9 8 12 12 Br 1.89107 * 119.93674 * 179.97438 * 11 10 9 13 13 C 1.38042 * 120.12509 * 359.97341 * 11 10 9 14 14 C 1.50695 * 120.00279 * 245.91115 * 5 2 1 15 15 O 1.42898 * 109.47088 * 83.64033 * 14 5 2 16 16 Si 1.86298 * 109.46966 * 203.63729 * 14 5 2 17 17 H 1.48502 * 109.47207 * 60.00069 * 16 14 5 18 18 H 1.48504 * 109.47201 * 179.97438 * 16 14 5 19 19 H 1.48502 * 109.47313 * 299.99809 * 16 14 5 20 20 H 1.08995 * 109.47536 * 346.86916 * 1 2 3 21 21 H 1.08998 * 109.46780 * 106.87991 * 1 2 3 22 22 H 1.09004 * 109.46637 * 226.87326 * 1 2 3 23 23 H 1.09000 * 109.46810 * 181.88691 * 3 2 1 24 24 H 1.08999 * 109.46970 * 301.88518 * 3 2 1 25 25 H 1.09000 * 109.46501 * 61.88584 * 3 2 1 26 26 H 1.09005 * 109.46767 * 255.63576 * 4 2 1 27 27 H 1.09004 * 109.47640 * 15.63043 * 4 2 1 28 28 H 1.08998 * 109.47653 * 135.63994 * 4 2 1 29 29 H 1.07997 * 119.99947 * 136.33197 * 6 5 2 30 30 H 1.07998 * 120.06179 * 359.97438 * 8 7 6 31 31 H 1.07998 * 119.92536 * 180.23145 * 9 8 7 32 32 H 1.07998 * 119.85792 * 179.74042 * 10 9 8 33 33 H 1.08003 * 120.07878 * 179.97438 * 13 11 10 34 34 H 1.08994 * 109.47282 * 323.63851 * 14 5 2 35 35 H 0.96696 * 114.00057 * 305.20833 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0325 -0.7103 1.2304 6 6 1.8116 -2.0086 1.3828 7 6 0.4840 -2.5749 1.0640 8 6 -0.1635 -3.4023 1.9819 9 6 -1.4051 -3.9238 1.6807 10 6 -2.0037 -3.6365 0.4674 11 6 -1.3642 -2.8208 -0.4505 12 35 -2.1910 -2.4348 -2.1069 13 6 -0.1243 -2.2888 -0.1589 14 6 2.7859 0.0551 2.2875 15 8 1.8572 0.6916 3.1676 16 14 3.8574 -1.1190 3.2591 17 1 4.8225 -1.7805 2.3446 18 1 4.6004 -0.3647 4.3005 19 1 3.0041 -2.1476 3.9064 20 1 -0.3634 1.0007 0.2334 21 1 -0.3633 -0.2984 -0.9834 22 1 -0.3633 -0.7026 0.7501 23 1 3.1294 1.4429 -0.0338 24 1 1.6492 1.9661 -0.8726 25 1 1.7044 1.9465 0.9064 26 1 2.4015 -1.7121 -0.9746 27 1 1.2281 -0.8175 -1.9702 28 1 2.8539 -0.1477 -1.6931 29 1 2.6030 -2.6532 1.7358 30 1 0.3046 -3.6313 2.9279 31 1 -1.9087 -4.5614 2.3923 32 1 -2.9736 -4.0506 0.2349 33 1 0.3741 -1.6529 -0.8757 34 1 3.4122 0.8101 1.8125 35 1 1.2142 1.2573 2.7186 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829131796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:02 Heat of formation + Delta-G solvation = 54.968180 kcal Electronic energy + Delta-G solvation = -17697.215942 eV Core-core repulsion = 15017.342850 eV Total energy + Delta-G solvation = -2679.873092 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 298.044 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.74795 -39.17498 -37.07835 -34.37554 -32.97753 -31.91690 -30.09504 -28.54703 -28.02739 -26.51824 -23.42500 -23.08931 -22.30429 -19.19287 -18.15457 -17.76743 -16.93276 -16.53426 -15.92987 -15.84380 -15.36075 -15.24197 -14.84938 -14.77215 -14.18866 -14.08545 -13.72939 -13.40418 -13.28380 -12.61180 -12.44107 -12.38236 -12.23027 -12.16774 -12.05693 -11.94587 -11.70115 -11.55797 -11.25363 -11.15388 -10.85993 -10.03139 -9.58873 -8.96106 -0.18584 0.19749 0.59962 0.69208 1.20013 1.47591 1.53758 1.97797 2.59447 3.45382 3.64780 3.76183 3.81114 3.85348 4.02753 4.09179 4.16498 4.25084 4.34313 4.43854 4.48702 4.58869 4.63486 4.64104 4.75485 4.84736 4.96079 4.97545 5.02582 5.11062 5.17655 5.24194 5.32218 5.34833 5.36032 5.47296 5.63542 5.81216 6.64124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.156 4.156 5 C -0.118 4.118 6 C -0.136 4.136 7 C -0.063 4.063 8 C -0.097 4.097 9 C -0.123 4.123 10 C -0.097 4.097 11 C -0.121 4.121 12 Br -0.057 7.057 13 C -0.094 4.094 14 C -0.089 4.089 15 O -0.542 6.542 16 Si 1.015 2.985 17 H -0.242 1.242 18 H -0.276 1.276 19 H -0.264 1.264 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.174 0.826 34 H 0.092 0.908 35 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 0.863 -0.474 1.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.213 4.213 5 C -0.118 4.118 6 C -0.154 4.154 7 C -0.064 4.064 8 C -0.115 4.115 9 C -0.141 4.141 10 C -0.117 4.117 11 C -0.200 4.200 12 Br 0.028 6.972 13 C -0.112 4.112 14 C -0.198 4.198 15 O -0.350 6.350 16 Si 0.837 3.163 17 H -0.165 1.165 18 H -0.201 1.201 19 H -0.189 1.189 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.157 0.843 33 H 0.191 0.809 34 H 0.109 0.891 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.783 0.127 -0.204 1.799 hybrid contribution -0.628 0.429 -0.365 0.843 sum 1.155 0.556 -0.570 1.403 Atomic orbital electron populations 1.22998 0.94367 1.02550 1.02596 1.19700 0.95379 0.96204 0.91831 1.22122 1.01740 0.93608 1.02713 1.22472 1.02030 1.00757 0.96006 1.22651 0.99653 0.94472 0.95042 1.21464 0.94224 0.95159 1.04575 1.18997 0.94739 0.98585 0.94105 1.21502 0.95286 0.95173 0.99556 1.21301 0.95400 1.00617 0.96808 1.21388 1.00390 0.96560 0.93348 1.21801 0.98356 1.05714 0.94154 1.96738 1.80670 1.94260 1.25524 1.22635 0.94027 0.96584 0.97973 1.25114 0.96573 1.02716 0.95419 1.86770 1.47957 1.65428 1.34797 0.84404 0.76770 0.76764 0.78316 1.16527 1.20132 1.18851 0.91860 0.91658 0.91044 0.91341 0.91568 0.91769 0.91995 0.91440 0.90568 0.84798 0.84228 0.83068 0.84303 0.80928 0.89053 0.77335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.21 7.36 71.98 0.53 0.74 16 2 C -0.03 0.09 0.75 -52.93 -0.04 0.05 16 3 C -0.14 0.78 6.69 71.99 0.48 1.26 16 4 C -0.16 0.48 7.84 71.98 0.56 1.04 16 5 C -0.12 0.15 4.06 -17.60 -0.07 0.07 16 6 C -0.14 -0.06 6.75 23.65 0.16 0.10 16 7 C -0.06 -0.12 4.55 -20.12 -0.09 -0.21 16 8 C -0.10 -0.11 9.79 22.52 0.22 0.11 16 9 C -0.12 -0.03 10.03 22.23 0.22 0.20 16 10 C -0.10 -0.17 9.78 22.34 0.22 0.04 16 11 C -0.12 -0.37 6.22 22.27 0.14 -0.23 16 12 Br -0.06 -0.17 33.59 -20.37 -0.68 -0.85 16 13 C -0.09 -0.19 4.98 22.54 0.11 -0.07 16 14 C -0.09 0.14 2.00 71.23 0.14 0.28 16 15 O -0.54 -0.25 12.68 -148.98 -1.89 -2.14 16 16 Si 1.02 0.46 25.77 68.60 1.77 2.23 16 17 H -0.24 0.22 7.11 99.48 0.71 0.92 16 18 H -0.28 -1.05 7.11 99.48 0.71 -0.34 16 19 H -0.26 -0.70 7.11 99.48 0.71 0.01 16 20 H 0.06 -0.15 7.64 -2.39 -0.02 -0.17 16 21 H 0.06 -0.04 5.60 -2.39 -0.01 -0.06 16 22 H 0.07 0.11 4.27 -2.39 -0.01 0.10 16 23 H 0.07 -0.43 7.30 -2.39 -0.02 -0.44 16 24 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H 0.06 -0.42 6.31 -2.39 -0.02 -0.43 16 26 H 0.06 -0.11 6.55 -2.38 -0.02 -0.13 16 27 H 0.07 -0.20 6.21 -2.38 -0.01 -0.21 16 28 H 0.08 -0.36 7.65 -2.39 -0.02 -0.38 16 29 H 0.13 -0.16 5.83 -2.91 -0.02 -0.18 16 30 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 31 H 0.15 -0.63 8.06 -2.91 -0.02 -0.66 16 32 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 33 H 0.17 0.02 1.67 -2.91 0.00 0.01 16 34 H 0.09 -0.45 6.10 -2.39 -0.01 -0.47 16 35 H 0.38 -1.83 7.65 -74.06 -0.57 -2.39 16 Total: 0.00 -5.98 279.23 3.09 -2.90 By element: Atomic # 1 Polarization: -6.82 SS G_CDS: 1.30 Total: -5.52 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 2.59 Total: 3.38 kcal Atomic # 8 Polarization: -0.25 SS G_CDS: -1.89 Total: -2.14 kcal Atomic # 14 Polarization: 0.46 SS G_CDS: 1.77 Total: 2.23 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -0.68 Total: -0.85 kcal Total: -5.98 3.09 -2.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829131796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.864 kcal (2) G-P(sol) polarization free energy of solvation -5.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds