Wall clock time and date at job start Mon Mar 23 2020 11:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47056 * 2 1 4 4 C 1.53003 * 109.47172 * 239.99832 * 2 1 3 5 5 C 1.50698 * 109.46995 * 119.99966 * 2 1 3 6 6 C 1.32569 * 120.00418 * 2.03539 * 5 2 1 7 7 C 1.47809 * 119.99808 * 38.72617 * 6 5 2 8 8 C 1.39543 * 120.12795 * 5.87356 * 7 6 5 9 9 C 1.37955 * 119.86205 * 179.97438 * 8 7 6 10 10 C 1.38439 * 120.13211 * 359.97438 * 9 8 7 11 11 Br 1.89097 * 119.86597 * 180.02562 * 10 9 8 12 12 C 1.38437 * 120.26632 * 0.27642 * 10 9 8 13 13 C 1.37958 * 120.13001 * 359.44478 * 12 10 9 14 14 C 1.50707 * 119.99898 * 182.03741 * 5 2 1 15 15 O 1.42897 * 109.47061 * 204.06668 * 14 5 2 16 16 Si 1.86293 * 109.47214 * 84.06228 * 14 5 2 17 17 H 1.48499 * 109.47176 * 64.96949 * 16 14 5 18 18 H 1.48496 * 109.47262 * 184.97003 * 16 14 5 19 19 H 1.48500 * 109.47629 * 304.97080 * 16 14 5 20 20 H 1.09004 * 109.47256 * 10.71528 * 1 2 3 21 21 H 1.09004 * 109.46945 * 130.71656 * 1 2 3 22 22 H 1.09005 * 109.47318 * 250.71364 * 1 2 3 23 23 H 1.08999 * 109.47476 * 187.05663 * 3 2 1 24 24 H 1.09005 * 109.46868 * 307.05795 * 3 2 1 25 25 H 1.08998 * 109.47385 * 67.05447 * 3 2 1 26 26 H 1.08990 * 109.47204 * 267.80581 * 4 2 1 27 27 H 1.09001 * 109.46716 * 27.80967 * 4 2 1 28 28 H 1.09004 * 109.46538 * 147.80427 * 4 2 1 29 29 H 1.08006 * 120.00325 * 218.73438 * 6 5 2 30 30 H 1.07998 * 120.06808 * 0.02562 * 8 7 6 31 31 H 1.08004 * 119.93258 * 180.02562 * 9 8 7 32 32 H 1.08002 * 119.93403 * 179.72513 * 12 10 9 33 33 H 1.07998 * 120.06619 * 180.29493 * 13 12 10 34 34 H 1.09003 * 109.46968 * 324.06328 * 14 5 2 35 35 H 0.96699 * 114.00500 * 59.99879 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1715 -1.2494 2.0825 7 6 -0.0403 -1.9291 1.5782 8 6 -0.2207 -2.1130 0.2068 9 6 -1.3535 -2.7486 -0.2579 10 6 -2.3099 -3.2040 0.6334 11 35 -3.8595 -4.0748 -0.0117 12 6 -2.1389 -3.0198 1.9948 13 6 -1.0075 -2.3908 2.4718 14 6 3.5132 -0.8080 1.4924 15 8 3.7752 -1.9347 2.3314 16 14 4.0980 0.7454 2.3381 17 1 3.4672 0.8468 3.6786 18 1 5.5747 0.7015 2.4880 19 1 3.7183 1.9265 1.5219 20 1 -0.3634 1.0098 -0.1911 21 1 -0.3633 -0.6704 -0.7789 22 1 -0.3634 -0.3394 0.9700 23 1 3.1226 1.4452 -0.1262 24 1 1.5772 1.9915 -0.8201 25 1 1.7834 1.9186 0.9463 26 1 2.1982 -1.7752 -1.0211 27 1 1.3041 -0.6288 -2.0480 28 1 2.9811 -0.2734 -1.5686 29 1 1.3557 -1.1918 3.1452 30 1 0.5253 -1.7592 -0.4894 31 1 -1.4941 -2.8918 -1.3191 32 1 -2.8905 -3.3733 2.6851 33 1 -0.8728 -2.2519 3.5343 34 1 4.0422 -0.9282 0.5470 35 1 3.4960 -2.7799 1.9536 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829131917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:05 Heat of formation + Delta-G solvation = 71.726596 kcal Electronic energy + Delta-G solvation = -17531.148156 eV Core-core repulsion = 14852.001763 eV Total energy + Delta-G solvation = -2679.146393 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 298.044 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.28548 -39.09085 -37.38513 -34.27330 -32.80775 -32.03427 -30.35131 -28.62730 -27.89697 -26.52388 -23.55665 -23.19867 -22.21464 -19.13986 -18.35885 -17.61430 -17.08048 -16.65891 -16.14217 -15.82154 -15.37258 -15.23995 -14.66481 -14.59626 -14.44869 -14.13542 -13.78280 -13.69203 -13.26263 -12.79290 -12.57597 -12.42127 -12.26952 -12.17717 -12.07767 -11.68174 -11.52410 -11.48945 -11.25824 -11.14849 -11.04535 -10.15319 -9.59337 -8.60392 -0.49438 0.36638 0.72239 0.89826 1.28118 1.48870 1.57984 2.03534 2.68241 3.38166 3.47437 3.65472 3.71274 3.78462 3.87149 3.93797 4.11855 4.24034 4.26456 4.28321 4.44832 4.47832 4.57306 4.60191 4.68451 4.77503 4.83253 4.87835 4.96655 4.97306 5.12250 5.15868 5.20211 5.26287 5.36520 5.47050 5.71053 5.78727 6.52113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 C -0.146 4.146 4 C -0.157 4.157 5 C -0.136 4.136 6 C -0.112 4.112 7 C -0.048 4.048 8 C -0.094 4.094 9 C -0.122 4.122 10 C -0.081 4.081 11 Br -0.054 7.054 12 C -0.104 4.104 13 C -0.102 4.102 14 C -0.089 4.089 15 O -0.539 6.539 16 Si 0.995 3.005 17 H -0.254 1.254 18 H -0.257 1.257 19 H -0.233 1.233 20 H 0.054 0.946 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.085 0.915 35 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 1.375 -1.506 2.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.036 4.036 3 C -0.203 4.203 4 C -0.214 4.214 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.049 4.049 8 C -0.112 4.112 9 C -0.142 4.142 10 C -0.161 4.161 11 Br 0.032 6.968 12 C -0.124 4.124 13 C -0.121 4.121 14 C -0.196 4.196 15 O -0.344 6.344 16 Si 0.813 3.187 17 H -0.177 1.177 18 H -0.181 1.181 19 H -0.156 1.156 20 H 0.072 0.928 21 H 0.106 0.894 22 H 0.113 0.887 23 H 0.082 0.918 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.177 0.823 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.103 0.897 35 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.530 2.243 -0.965 2.881 hybrid contribution -0.255 -0.720 -0.460 0.892 sum 1.275 1.523 -1.425 2.444 Atomic orbital electron populations 1.24085 0.94091 1.02444 1.04470 1.19681 0.95810 0.95239 0.92858 1.22312 1.01356 0.93961 1.02693 1.22194 1.02181 1.00536 0.96492 1.22659 0.95501 0.99317 0.96193 1.21361 0.92827 0.99506 0.99277 1.18930 0.94606 0.98498 0.92849 1.22235 0.98947 0.94084 0.95931 1.20947 0.93968 0.99649 0.99647 1.21857 0.94725 1.03852 0.95652 1.96767 1.34367 1.77574 1.88112 1.20994 0.98469 0.99448 0.93465 1.21260 0.92827 0.98185 0.99857 1.25036 0.94474 0.99691 1.00422 1.86729 1.85009 1.16421 1.46277 0.84988 0.80068 0.73857 0.79773 1.17699 1.18133 1.15563 0.92750 0.89385 0.88710 0.91764 0.91382 0.91976 0.91715 0.91631 0.91414 0.85039 0.82257 0.85047 0.85035 0.84968 0.89682 0.78358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 0.21 7.13 37.16 0.26 0.47 16 2 C -0.04 0.06 0.63 -155.66 -0.10 -0.03 16 3 C -0.15 0.26 6.26 37.16 0.23 0.49 16 4 C -0.16 0.44 7.15 37.16 0.27 0.70 16 5 C -0.14 0.17 2.97 -101.25 -0.30 -0.14 16 6 C -0.11 0.07 7.91 -37.58 -0.30 -0.23 16 7 C -0.05 0.01 3.85 -105.01 -0.40 -0.40 16 8 C -0.09 0.04 5.42 -39.20 -0.21 -0.17 16 9 C -0.12 -0.04 9.45 -39.61 -0.37 -0.42 16 10 C -0.08 -0.11 6.23 -39.43 -0.25 -0.35 16 11 Br -0.05 -0.09 33.69 -68.01 -2.29 -2.38 16 12 C -0.10 -0.08 9.77 -39.61 -0.39 -0.46 16 13 C -0.10 -0.01 9.78 -39.20 -0.38 -0.39 16 14 C -0.09 0.11 2.62 36.01 0.09 0.20 16 15 O -0.54 0.13 11.92 -35.23 -0.42 -0.29 16 16 Si 1.00 -0.32 26.11 -169.99 -4.44 -4.76 16 17 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 18 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 19 H -0.23 0.32 4.86 56.52 0.27 0.59 16 20 H 0.05 -0.05 7.56 -51.93 -0.39 -0.44 16 21 H 0.09 -0.13 4.31 -59.23 -0.26 -0.39 16 22 H 0.09 -0.01 3.61 -64.47 -0.23 -0.24 16 23 H 0.06 -0.15 5.82 -51.93 -0.30 -0.45 16 24 H 0.07 -0.14 8.04 -51.93 -0.42 -0.56 16 25 H 0.06 -0.08 7.11 -51.93 -0.37 -0.45 16 26 H 0.06 -0.18 6.96 -51.93 -0.36 -0.55 16 27 H 0.06 -0.20 7.47 -51.93 -0.39 -0.59 16 28 H 0.07 -0.22 7.68 -51.93 -0.40 -0.62 16 29 H 0.13 -0.07 8.06 -52.48 -0.42 -0.50 16 30 H 0.16 -0.28 2.01 -52.49 -0.11 -0.39 16 31 H 0.13 -0.10 8.06 -52.48 -0.42 -0.53 16 32 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 33 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 34 H 0.09 -0.24 7.38 -51.93 -0.38 -0.62 16 35 H 0.37 -1.05 9.03 45.56 0.41 -0.64 16 LS Contribution 279.16 15.07 4.21 4.21 Total: 0.00 -2.60 279.16 -8.60 -11.20 By element: Atomic # 1 Polarization: -3.45 SS G_CDS: -3.81 Total: -7.26 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.85 Total: -0.72 kcal Atomic # 8 Polarization: 0.13 SS G_CDS: -0.42 Total: -0.29 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: -4.44 Total: -4.76 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.29 Total: -2.38 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -2.60 -8.60 -11.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829131917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.928 kcal (2) G-P(sol) polarization free energy of solvation -2.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds