Wall clock time and date at job start Mon Mar 23 2020 11:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47056 * 2 1 4 4 C 1.53003 * 109.47172 * 239.99832 * 2 1 3 5 5 C 1.50698 * 109.46995 * 119.99966 * 2 1 3 6 6 C 1.32569 * 120.00418 * 2.03539 * 5 2 1 7 7 C 1.47809 * 119.99808 * 38.72617 * 6 5 2 8 8 C 1.39543 * 120.12795 * 5.87356 * 7 6 5 9 9 C 1.37955 * 119.86205 * 179.97438 * 8 7 6 10 10 C 1.38439 * 120.13211 * 359.97438 * 9 8 7 11 11 Br 1.89097 * 119.86597 * 180.02562 * 10 9 8 12 12 C 1.38437 * 120.26632 * 0.27642 * 10 9 8 13 13 C 1.37958 * 120.13001 * 359.44478 * 12 10 9 14 14 C 1.50707 * 119.99898 * 182.03741 * 5 2 1 15 15 O 1.42897 * 109.47061 * 204.06668 * 14 5 2 16 16 Si 1.86293 * 109.47214 * 84.06228 * 14 5 2 17 17 H 1.48499 * 109.47176 * 64.96949 * 16 14 5 18 18 H 1.48496 * 109.47262 * 184.97003 * 16 14 5 19 19 H 1.48500 * 109.47629 * 304.97080 * 16 14 5 20 20 H 1.09004 * 109.47256 * 10.71528 * 1 2 3 21 21 H 1.09004 * 109.46945 * 130.71656 * 1 2 3 22 22 H 1.09005 * 109.47318 * 250.71364 * 1 2 3 23 23 H 1.08999 * 109.47476 * 187.05663 * 3 2 1 24 24 H 1.09005 * 109.46868 * 307.05795 * 3 2 1 25 25 H 1.08998 * 109.47385 * 67.05447 * 3 2 1 26 26 H 1.08990 * 109.47204 * 267.80581 * 4 2 1 27 27 H 1.09001 * 109.46716 * 27.80967 * 4 2 1 28 28 H 1.09004 * 109.46538 * 147.80427 * 4 2 1 29 29 H 1.08006 * 120.00325 * 218.73438 * 6 5 2 30 30 H 1.07998 * 120.06808 * 0.02562 * 8 7 6 31 31 H 1.08004 * 119.93258 * 180.02562 * 9 8 7 32 32 H 1.08002 * 119.93403 * 179.72513 * 12 10 9 33 33 H 1.07998 * 120.06619 * 180.29493 * 13 12 10 34 34 H 1.09003 * 109.46968 * 324.06328 * 14 5 2 35 35 H 0.96699 * 114.00500 * 59.99879 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1715 -1.2494 2.0825 7 6 -0.0403 -1.9291 1.5782 8 6 -0.2207 -2.1130 0.2068 9 6 -1.3535 -2.7486 -0.2579 10 6 -2.3099 -3.2040 0.6334 11 35 -3.8595 -4.0748 -0.0117 12 6 -2.1389 -3.0198 1.9948 13 6 -1.0075 -2.3908 2.4718 14 6 3.5132 -0.8080 1.4924 15 8 3.7752 -1.9347 2.3314 16 14 4.0980 0.7454 2.3381 17 1 3.4672 0.8468 3.6786 18 1 5.5747 0.7015 2.4880 19 1 3.7183 1.9265 1.5219 20 1 -0.3634 1.0098 -0.1911 21 1 -0.3633 -0.6704 -0.7789 22 1 -0.3634 -0.3394 0.9700 23 1 3.1226 1.4452 -0.1262 24 1 1.5772 1.9915 -0.8201 25 1 1.7834 1.9186 0.9463 26 1 2.1982 -1.7752 -1.0211 27 1 1.3041 -0.6288 -2.0480 28 1 2.9811 -0.2734 -1.5686 29 1 1.3557 -1.1918 3.1452 30 1 0.5253 -1.7592 -0.4894 31 1 -1.4941 -2.8918 -1.3191 32 1 -2.8905 -3.3733 2.6851 33 1 -0.8728 -2.2519 3.5343 34 1 4.0422 -0.9282 0.5470 35 1 3.4960 -2.7799 1.9536 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829131917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:05 Heat of formation + Delta-G solvation = 80.420505 kcal Electronic energy + Delta-G solvation = -17530.771160 eV Core-core repulsion = 14852.001763 eV Total energy + Delta-G solvation = -2678.769397 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 298.044 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.21171 -39.03127 -37.30535 -34.22121 -32.76795 -32.01517 -30.33746 -28.42165 -27.80783 -26.45365 -23.51847 -23.14523 -22.12718 -19.05033 -18.29408 -17.53921 -17.01788 -16.61260 -16.09515 -15.78201 -15.27122 -15.15437 -14.59004 -14.51603 -14.38460 -14.06698 -13.61808 -13.61450 -13.22224 -12.72613 -12.40702 -12.36342 -12.27869 -12.15713 -11.98075 -11.62024 -11.44253 -11.42355 -11.25858 -11.16129 -10.95783 -10.13972 -9.55802 -8.55888 -0.46167 0.38424 0.67375 0.92960 1.31088 1.50970 1.56381 2.05122 2.70127 3.49215 3.56697 3.75487 3.81426 3.91002 3.94515 4.05846 4.22453 4.28455 4.33146 4.43768 4.55181 4.65411 4.68659 4.75426 4.78729 4.88404 4.97463 5.03655 5.04893 5.12823 5.20474 5.26944 5.31901 5.34533 5.47074 5.54875 5.76850 5.82549 6.72939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.034 4.034 3 C -0.152 4.152 4 C -0.160 4.160 5 C -0.126 4.126 6 C -0.123 4.123 7 C -0.047 4.047 8 C -0.093 4.093 9 C -0.129 4.129 10 C -0.097 4.097 11 Br -0.064 7.064 12 C -0.114 4.114 13 C -0.112 4.112 14 C -0.085 4.085 15 O -0.555 6.555 16 Si 1.005 2.995 17 H -0.283 1.283 18 H -0.278 1.278 19 H -0.213 1.213 20 H 0.052 0.948 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.175 0.825 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 1.581 -2.473 3.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.034 4.034 3 C -0.209 4.209 4 C -0.216 4.216 5 C -0.126 4.126 6 C -0.141 4.141 7 C -0.047 4.047 8 C -0.110 4.110 9 C -0.148 4.148 10 C -0.176 4.176 11 Br 0.022 6.978 12 C -0.133 4.133 13 C -0.131 4.131 14 C -0.193 4.193 15 O -0.362 6.362 16 Si 0.826 3.174 17 H -0.209 1.209 18 H -0.203 1.203 19 H -0.135 1.135 20 H 0.071 0.929 21 H 0.111 0.889 22 H 0.102 0.898 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.146 0.854 30 H 0.191 0.809 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.126 0.874 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.142 2.457 -1.945 3.796 hybrid contribution -0.393 -0.741 -0.103 0.846 sum 1.749 1.715 -2.048 3.193 Atomic orbital electron populations 1.24081 0.94729 1.02377 1.03967 1.19678 0.95236 0.95384 0.93127 1.22376 1.02065 0.93854 1.02602 1.22224 1.02859 1.00637 0.95927 1.22738 0.95383 0.98342 0.96165 1.21326 0.92939 1.00529 0.99267 1.19032 0.94520 0.98124 0.93064 1.22398 0.98960 0.93637 0.96023 1.21114 0.94009 0.99644 1.00077 1.21961 0.94844 1.04702 0.96078 1.96741 1.35045 1.77848 1.88186 1.21119 0.98925 0.99774 0.93519 1.21439 0.92760 0.98237 1.00616 1.24988 0.94454 0.98890 1.00952 1.86701 1.85190 1.17281 1.47053 0.84933 0.78276 0.75506 0.78655 1.20861 1.20324 1.13545 0.92941 0.88861 0.89817 0.90831 0.90796 0.92679 0.91355 0.91081 0.90377 0.85446 0.80856 0.84127 0.84656 0.83917 0.87449 0.76995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 0.52 7.13 71.98 0.51 1.04 16 2 C -0.03 0.16 0.63 -52.93 -0.03 0.13 16 3 C -0.15 0.72 6.26 71.98 0.45 1.17 16 4 C -0.16 1.19 7.15 71.98 0.51 1.71 16 5 C -0.13 0.39 2.97 -17.60 -0.05 0.34 16 6 C -0.12 0.14 7.91 23.65 0.19 0.33 16 7 C -0.05 0.01 3.85 -20.12 -0.08 -0.07 16 8 C -0.09 0.12 5.42 22.52 0.12 0.24 16 9 C -0.13 -0.09 9.45 22.25 0.21 0.12 16 10 C -0.10 -0.30 6.23 22.37 0.14 -0.16 16 11 Br -0.06 -0.25 33.69 -20.37 -0.69 -0.93 16 12 C -0.11 -0.25 9.77 22.25 0.22 -0.04 16 13 C -0.11 -0.07 9.78 22.52 0.22 0.15 16 14 C -0.08 0.28 2.62 71.24 0.19 0.47 16 15 O -0.55 0.49 11.92 -148.98 -1.78 -1.29 16 16 Si 1.00 -0.48 26.11 68.60 1.79 1.31 16 17 H -0.28 -1.25 7.11 99.48 0.71 -0.54 16 18 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 19 H -0.21 0.78 4.86 99.48 0.48 1.26 16 20 H 0.05 -0.11 7.56 -2.38 -0.02 -0.13 16 21 H 0.09 -0.35 4.31 -9.24 -0.04 -0.39 16 22 H 0.08 -0.01 3.61 -14.16 -0.05 -0.06 16 23 H 0.07 -0.48 5.82 -2.39 -0.01 -0.50 16 24 H 0.07 -0.41 8.04 -2.38 -0.02 -0.43 16 25 H 0.05 -0.17 7.11 -2.39 -0.02 -0.19 16 26 H 0.07 -0.53 6.96 -2.39 -0.02 -0.55 16 27 H 0.07 -0.57 7.47 -2.39 -0.02 -0.59 16 28 H 0.08 -0.70 7.68 -2.39 -0.02 -0.72 16 29 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 30 H 0.17 -0.80 2.01 -2.91 -0.01 -0.81 16 31 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 32 H 0.14 0.07 8.06 -2.91 -0.02 0.05 16 33 H 0.14 -0.33 8.06 -2.91 -0.02 -0.36 16 34 H 0.11 -0.81 7.38 -2.39 -0.02 -0.82 16 35 H 0.38 -2.43 9.03 -74.06 -0.67 -3.10 16 Total: 0.00 -6.67 279.16 2.83 -3.84 By element: Atomic # 1 Polarization: -9.25 SS G_CDS: 0.90 Total: -8.35 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 2.60 Total: 5.42 kcal Atomic # 8 Polarization: 0.49 SS G_CDS: -1.78 Total: -1.29 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: 1.79 Total: 1.31 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -0.69 Total: -0.93 kcal Total: -6.67 2.83 -3.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829131917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.264 kcal (2) G-P(sol) polarization free energy of solvation -6.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds