Wall clock time and date at job start Mon Mar 23 2020 11:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00314 * 2 1 4 4 C 1.35998 * 120.00045 * 179.97438 * 2 1 3 5 5 C 1.37665 * 119.99781 * 356.94601 * 4 2 1 6 6 C 1.41226 * 119.99945 * 39.43131 * 5 4 2 7 7 O 1.21464 * 119.99894 * 189.38894 * 6 5 4 8 8 C 1.48218 * 120.00215 * 219.42219 * 5 4 2 9 9 C 1.39525 * 119.98114 * 115.00151 * 8 5 4 10 10 C 1.37670 * 120.01855 * 180.02562 * 9 8 5 11 11 C 1.39676 * 119.98390 * 0.02562 * 10 9 8 12 12 C 1.47695 * 120.01817 * 179.97438 * 11 10 9 13 13 C 1.32654 * 120.00049 * 64.99718 * 12 11 10 14 14 N 1.39804 * 120.00140 * 170.51330 * 13 12 11 15 15 H 1.00898 * 109.47201 * 350.54383 * 14 13 12 16 16 C 1.46902 * 109.46768 * 110.53886 * 14 13 12 17 17 C 1.46903 * 109.47228 * 230.53999 * 14 13 12 18 18 C 1.50701 * 120.00050 * 244.99379 * 12 11 10 19 19 O 1.42905 * 109.46755 * 38.80570 * 18 12 11 20 20 Si 1.86297 * 109.47480 * 278.80174 * 18 12 11 21 21 H 1.48503 * 109.46675 * 59.99870 * 20 18 12 22 22 H 1.48498 * 109.47009 * 180.02562 * 20 18 12 23 23 H 1.48496 * 109.46838 * 299.99936 * 20 18 12 24 24 C 1.39667 * 119.96098 * 0.24987 * 11 10 9 25 25 C 1.37675 * 119.98452 * 359.47084 * 24 11 10 26 26 H 1.08992 * 109.47147 * 233.19346 * 1 2 3 27 27 H 1.08997 * 109.46922 * 353.20288 * 1 2 3 28 28 H 1.08997 * 109.46536 * 113.19598 * 1 2 3 29 29 H 1.09003 * 109.46964 * 239.99430 * 3 2 1 30 30 H 1.08995 * 109.46872 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47237 * 119.99749 * 3 2 1 32 32 H 1.07999 * 120.00266 * 176.94818 * 4 2 1 33 33 H 1.08003 * 119.99870 * 9.38079 * 6 5 4 34 34 H 1.07996 * 119.99200 * 359.97438 * 9 8 5 35 35 H 1.08004 * 120.01359 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.00019 * 350.51876 * 13 12 11 37 37 H 1.08999 * 109.47492 * 300.00152 * 16 14 13 38 38 H 1.09001 * 109.46765 * 180.02562 * 16 14 13 39 39 H 1.08999 * 109.46972 * 60.00459 * 16 14 13 40 40 H 1.08996 * 109.47170 * 299.99644 * 17 14 13 41 41 H 1.09000 * 109.47121 * 60.00350 * 17 14 13 42 42 H 1.08998 * 109.46519 * 180.02562 * 17 14 13 43 43 H 1.09002 * 109.46838 * 158.79817 * 18 12 11 44 44 H 0.96700 * 113.99914 * 56.49032 * 19 18 12 45 45 H 1.08000 * 120.00428 * 179.73033 * 24 11 10 46 46 H 1.07999 * 119.99352 * 180.27224 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1450 -1.1778 0.0005 5 6 1.4581 -2.3691 0.0646 6 6 0.2524 -2.5285 -0.6533 7 8 -0.4406 -3.5083 -0.4665 8 6 1.9840 -3.4845 0.8868 9 6 1.2696 -3.9267 2.0007 10 6 1.7576 -4.9624 2.7653 11 6 2.9685 -5.5702 2.4260 12 6 3.4931 -6.6809 3.2460 13 6 2.8319 -7.8293 3.3081 14 7 3.4195 -8.9422 3.9169 15 1 4.3899 -8.7460 4.1114 16 6 2.7188 -9.2398 5.1733 17 6 3.3246 -10.0996 3.0173 18 6 4.7794 -6.5098 4.0122 19 8 4.8386 -5.1890 4.5546 20 14 6.2246 -6.7762 2.8671 21 1 6.1704 -5.7847 1.7628 22 1 7.4921 -6.6081 3.6223 23 1 6.1630 -8.1487 2.3035 24 6 3.6859 -5.1231 1.3142 25 6 3.1937 -4.0911 0.5472 26 1 -0.3633 -0.6156 0.8227 27 1 -0.3633 1.0204 0.1216 28 1 -0.3632 -0.4048 -0.9446 29 1 2.8243 1.3263 -0.8900 30 1 1.4893 2.0971 -0.0005 31 1 2.8242 1.3264 0.8900 32 1 3.2239 -1.1785 -0.0493 33 1 -0.0534 -1.7791 -1.3684 34 1 0.3339 -3.4559 2.2637 35 1 1.2047 -5.3044 3.6277 36 1 1.8397 -7.9045 2.8882 37 1 2.7892 -8.3810 5.8409 38 1 3.1772 -10.1072 5.6482 39 1 1.6705 -9.4518 4.9633 40 1 2.2763 -10.3116 2.8073 41 1 3.8445 -9.8788 2.0850 42 1 3.7823 -10.9673 3.4922 43 1 4.8191 -7.2375 4.8227 44 1 4.0870 -4.9616 5.1190 45 1 4.6245 -5.5897 1.0537 46 1 3.7462 -3.7482 -0.3151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725416681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:07 Heat of formation + Delta-G solvation = 154.058317 kcal Electronic energy + Delta-G solvation = -25444.606523 eV Core-core repulsion = 21922.593414 eV Total energy + Delta-G solvation = -3522.013110 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.85677 -41.94216 -40.93684 -39.59607 -39.32812 -36.62873 -34.34561 -33.06900 -31.78181 -31.48742 -30.57816 -29.49582 -28.45629 -27.73227 -25.31431 -24.73732 -23.87092 -23.31782 -21.50389 -21.24715 -20.50353 -19.73898 -19.45791 -18.81780 -18.42890 -18.11981 -18.00408 -17.42951 -17.29275 -16.99321 -16.89143 -16.56320 -16.21013 -16.11240 -16.02050 -15.88124 -15.60654 -15.55384 -15.50716 -15.23981 -14.97851 -14.67966 -14.65361 -14.51192 -13.95596 -13.87213 -13.79894 -13.72595 -13.40240 -13.18551 -12.76002 -12.43939 -12.33139 -11.04753 -10.94010 -10.70812 -9.28381 -2.01569 -1.40453 -0.93336 -0.77871 -0.62797 -0.55827 -0.21682 0.06740 0.54561 0.68451 0.74823 0.76329 0.93351 1.26397 1.36227 1.60048 1.74952 1.77922 1.82080 1.93670 1.97582 2.13160 2.36121 2.39187 2.43061 2.68279 2.70729 2.75588 2.86524 2.88243 2.92080 2.99955 3.21510 3.23524 3.39568 3.42086 3.50382 3.57181 3.64443 3.68124 3.78553 3.91460 4.01105 4.28461 4.38148 4.47815 4.68040 4.79133 4.83551 4.92774 5.03225 6.23238 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.003901 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.137588 B = 7175.547581 C = 7861.035087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.568 5.568 3 C 0.064 3.936 4 C 0.284 3.716 5 C -0.413 4.413 6 C 0.372 3.628 7 O -0.503 6.503 8 C 0.059 3.941 9 C -0.098 4.098 10 C -0.088 4.088 11 C -0.105 4.105 12 C -0.002 4.002 13 C -0.123 4.123 14 N -0.338 5.338 15 H 0.416 0.584 16 C -0.052 4.052 17 C -0.045 4.045 18 C -0.119 4.119 19 O -0.507 6.507 20 Si 0.975 3.025 21 H -0.219 1.219 22 H -0.227 1.227 23 H -0.240 1.240 24 C -0.092 4.092 25 C -0.122 4.122 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.197 0.803 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.380 0.620 45 H 0.127 0.873 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 -11.457 8.281 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.262 5.262 3 C -0.077 4.077 4 C 0.143 3.857 5 C -0.424 4.424 6 C 0.239 3.761 7 O -0.383 6.383 8 C 0.058 3.942 9 C -0.116 4.116 10 C -0.106 4.106 11 C -0.106 4.106 12 C -0.004 4.004 13 C -0.229 4.229 14 N 0.087 4.913 15 H 0.253 0.747 16 C -0.192 4.192 17 C -0.185 4.185 18 C -0.226 4.226 19 O -0.312 6.312 20 Si 0.788 3.212 21 H -0.141 1.141 22 H -0.149 1.149 23 H -0.163 1.163 24 C -0.110 4.110 25 C -0.140 4.140 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.172 0.828 33 H 0.094 0.906 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.214 0.786 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.089 0.911 44 H 0.229 0.771 45 H 0.144 0.856 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.917 -11.828 7.462 14.824 hybrid contribution -0.660 0.345 0.660 0.994 sum 4.258 -11.483 8.121 14.695 Atomic orbital electron populations 1.22590 0.77995 1.04716 1.03694 1.46982 1.07656 1.05700 1.65855 1.22259 0.98031 0.84108 1.03344 1.22532 0.97408 0.84679 0.81075 1.19360 1.06296 0.96490 1.20294 1.22140 0.82725 0.87716 0.83497 1.90563 1.52056 1.31111 1.64569 1.18329 0.92295 0.92069 0.91490 1.21139 0.99898 0.96672 0.93905 1.20994 0.93877 0.96233 0.99521 1.18045 0.97228 0.97997 0.97364 1.21688 0.94296 0.93320 0.91054 1.22862 1.03942 0.87241 1.08886 1.42975 1.17997 1.14435 1.15928 0.74652 1.24280 1.02873 1.07973 0.84106 1.24251 1.10231 0.87159 0.96884 1.25669 1.04515 0.90441 1.01967 1.86846 1.49262 1.26723 1.68357 0.84991 0.75964 0.81621 0.78581 1.14127 1.14893 1.16348 1.21244 0.98798 0.96893 0.94068 1.21317 0.96781 0.96037 0.99832 0.89988 0.89272 0.90342 0.90728 0.89109 0.90447 0.82811 0.90563 0.85504 0.85863 0.78574 0.86044 0.85401 0.85340 0.85314 0.85642 0.85283 0.91115 0.77083 0.85565 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.67 8.97 59.85 0.54 -0.13 16 2 N -0.57 7.53 3.31 -189.73 -0.63 6.90 16 3 C 0.06 -0.95 10.75 59.85 0.64 -0.31 16 4 C 0.28 -3.66 9.99 -15.91 -0.16 -3.82 16 5 C -0.41 4.28 4.79 -104.87 -0.50 3.78 16 6 C 0.37 -2.96 8.84 31.87 0.28 -2.68 16 7 O -0.50 1.80 16.98 5.40 0.09 1.90 16 8 C 0.06 -0.62 5.01 -104.84 -0.53 -1.15 16 9 C -0.10 1.09 9.27 -39.31 -0.36 0.72 16 10 C -0.09 1.29 9.69 -39.25 -0.38 0.91 16 11 C -0.11 1.71 4.85 -104.96 -0.51 1.20 16 12 C 0.00 0.05 3.87 -102.66 -0.40 -0.35 16 13 C -0.12 3.06 7.91 -15.80 -0.12 2.94 16 14 N -0.34 9.61 0.59 -189.31 -0.11 9.49 16 15 H 0.42 -12.17 5.11 -39.29 -0.20 -12.37 16 16 C -0.05 1.50 9.14 60.07 0.55 2.05 16 17 C -0.04 1.28 9.14 60.07 0.55 1.83 16 18 C -0.12 2.47 2.29 36.01 0.08 2.55 16 19 O -0.51 8.75 12.22 -35.23 -0.43 8.32 16 20 Si 0.97 -17.66 26.11 -169.99 -4.44 -22.10 16 21 H -0.22 3.43 5.42 56.52 0.31 3.74 16 22 H -0.23 3.47 7.11 56.52 0.40 3.87 16 23 H -0.24 4.96 7.11 56.52 0.40 5.36 16 24 C -0.09 1.28 9.17 -39.25 -0.36 0.92 16 25 C -0.12 1.45 9.70 -39.31 -0.38 1.07 16 26 H 0.08 -0.99 7.39 -51.93 -0.38 -1.38 16 27 H 0.09 -1.25 7.57 -51.93 -0.39 -1.65 16 28 H 0.08 -1.01 5.38 -51.93 -0.28 -1.28 16 29 H 0.07 -1.13 8.14 -51.93 -0.42 -1.55 16 30 H 0.09 -1.37 7.56 -51.93 -0.39 -1.76 16 31 H 0.08 -1.17 8.14 -51.93 -0.42 -1.59 16 32 H 0.15 -2.35 8.06 -52.49 -0.42 -2.77 16 33 H 0.08 -0.79 5.35 -52.48 -0.28 -1.07 16 34 H 0.13 -1.30 8.06 -52.49 -0.42 -1.72 16 35 H 0.12 -2.10 8.06 -52.48 -0.42 -2.52 16 36 H 0.20 -4.91 8.05 -52.49 -0.42 -5.34 16 37 H 0.12 -3.49 8.14 -51.93 -0.42 -3.91 16 38 H 0.13 -3.84 8.14 -51.93 -0.42 -4.26 16 39 H 0.13 -3.71 8.14 -51.93 -0.42 -4.13 16 40 H 0.13 -3.69 8.14 -51.93 -0.42 -4.12 16 41 H 0.13 -3.50 8.14 -51.93 -0.42 -3.92 16 42 H 0.13 -3.84 8.14 -51.93 -0.42 -4.27 16 43 H 0.07 -1.79 6.26 -51.93 -0.32 -2.12 16 44 H 0.38 -7.60 9.04 45.56 0.41 -7.19 16 45 H 0.13 -1.92 4.73 -52.49 -0.25 -2.17 16 46 H 0.13 -1.67 8.06 -52.49 -0.42 -2.09 16 LS Contribution 366.02 15.07 5.52 5.52 Total: 1.00 -33.10 366.02 -7.54 -40.64 By element: Atomic # 1 Polarization: -53.72 SS G_CDS: -6.48 Total: -60.20 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -1.06 Total: 9.53 kcal Atomic # 7 Polarization: 17.14 SS G_CDS: -0.74 Total: 16.40 kcal Atomic # 8 Polarization: 10.56 SS G_CDS: -0.34 Total: 10.22 kcal Atomic # 14 Polarization: -17.66 SS G_CDS: -4.44 Total: -22.10 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.10 -7.54 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725416681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.698 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds