Wall clock time and date at job start Mon Mar 23 2020 11:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00314 * 2 1 4 4 C 1.35998 * 120.00045 * 179.97438 * 2 1 3 5 5 C 1.37665 * 119.99781 * 356.94601 * 4 2 1 6 6 C 1.41226 * 119.99945 * 39.43131 * 5 4 2 7 7 O 1.21464 * 119.99894 * 189.38894 * 6 5 4 8 8 C 1.48218 * 120.00215 * 219.42219 * 5 4 2 9 9 C 1.39525 * 119.98114 * 115.00151 * 8 5 4 10 10 C 1.37670 * 120.01855 * 180.02562 * 9 8 5 11 11 C 1.39676 * 119.98390 * 0.02562 * 10 9 8 12 12 C 1.47695 * 120.01817 * 179.97438 * 11 10 9 13 13 C 1.32654 * 120.00049 * 64.99718 * 12 11 10 14 14 N 1.39804 * 120.00140 * 170.51330 * 13 12 11 15 15 H 1.00898 * 109.47201 * 350.54383 * 14 13 12 16 16 C 1.46902 * 109.46768 * 110.53886 * 14 13 12 17 17 C 1.46903 * 109.47228 * 230.53999 * 14 13 12 18 18 C 1.50701 * 120.00050 * 244.99379 * 12 11 10 19 19 O 1.42905 * 109.46755 * 38.80570 * 18 12 11 20 20 Si 1.86297 * 109.47480 * 278.80174 * 18 12 11 21 21 H 1.48503 * 109.46675 * 59.99870 * 20 18 12 22 22 H 1.48498 * 109.47009 * 180.02562 * 20 18 12 23 23 H 1.48496 * 109.46838 * 299.99936 * 20 18 12 24 24 C 1.39667 * 119.96098 * 0.24987 * 11 10 9 25 25 C 1.37675 * 119.98452 * 359.47084 * 24 11 10 26 26 H 1.08992 * 109.47147 * 233.19346 * 1 2 3 27 27 H 1.08997 * 109.46922 * 353.20288 * 1 2 3 28 28 H 1.08997 * 109.46536 * 113.19598 * 1 2 3 29 29 H 1.09003 * 109.46964 * 239.99430 * 3 2 1 30 30 H 1.08995 * 109.46872 * 359.97438 * 3 2 1 31 31 H 1.08998 * 109.47237 * 119.99749 * 3 2 1 32 32 H 1.07999 * 120.00266 * 176.94818 * 4 2 1 33 33 H 1.08003 * 119.99870 * 9.38079 * 6 5 4 34 34 H 1.07996 * 119.99200 * 359.97438 * 9 8 5 35 35 H 1.08004 * 120.01359 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.00019 * 350.51876 * 13 12 11 37 37 H 1.08999 * 109.47492 * 300.00152 * 16 14 13 38 38 H 1.09001 * 109.46765 * 180.02562 * 16 14 13 39 39 H 1.08999 * 109.46972 * 60.00459 * 16 14 13 40 40 H 1.08996 * 109.47170 * 299.99644 * 17 14 13 41 41 H 1.09000 * 109.47121 * 60.00350 * 17 14 13 42 42 H 1.08998 * 109.46519 * 180.02562 * 17 14 13 43 43 H 1.09002 * 109.46838 * 158.79817 * 18 12 11 44 44 H 0.96700 * 113.99914 * 56.49032 * 19 18 12 45 45 H 1.08000 * 120.00428 * 179.73033 * 24 11 10 46 46 H 1.07999 * 119.99352 * 180.27224 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1450 -1.1778 0.0005 5 6 1.4581 -2.3691 0.0646 6 6 0.2524 -2.5285 -0.6533 7 8 -0.4406 -3.5083 -0.4665 8 6 1.9840 -3.4845 0.8868 9 6 1.2696 -3.9267 2.0007 10 6 1.7576 -4.9624 2.7653 11 6 2.9685 -5.5702 2.4260 12 6 3.4931 -6.6809 3.2460 13 6 2.8319 -7.8293 3.3081 14 7 3.4195 -8.9422 3.9169 15 1 4.3899 -8.7460 4.1114 16 6 2.7188 -9.2398 5.1733 17 6 3.3246 -10.0996 3.0173 18 6 4.7794 -6.5098 4.0122 19 8 4.8386 -5.1890 4.5546 20 14 6.2246 -6.7762 2.8671 21 1 6.1704 -5.7847 1.7628 22 1 7.4921 -6.6081 3.6223 23 1 6.1630 -8.1487 2.3035 24 6 3.6859 -5.1231 1.3142 25 6 3.1937 -4.0911 0.5472 26 1 -0.3633 -0.6156 0.8227 27 1 -0.3633 1.0204 0.1216 28 1 -0.3632 -0.4048 -0.9446 29 1 2.8243 1.3263 -0.8900 30 1 1.4893 2.0971 -0.0005 31 1 2.8242 1.3264 0.8900 32 1 3.2239 -1.1785 -0.0493 33 1 -0.0534 -1.7791 -1.3684 34 1 0.3339 -3.4559 2.2637 35 1 1.2047 -5.3044 3.6277 36 1 1.8397 -7.9045 2.8882 37 1 2.7892 -8.3810 5.8409 38 1 3.1772 -10.1072 5.6482 39 1 1.6705 -9.4518 4.9633 40 1 2.2763 -10.3116 2.8073 41 1 3.8445 -9.8788 2.0850 42 1 3.7823 -10.9673 3.4922 43 1 4.8191 -7.2375 4.8227 44 1 4.0870 -4.9616 5.1190 45 1 4.6245 -5.5897 1.0537 46 1 3.7462 -3.7482 -0.3151 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725416681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:06 Heat of formation + Delta-G solvation = 133.202892 kcal Electronic energy + Delta-G solvation = -25445.510882 eV Core-core repulsion = 21922.593414 eV Total energy + Delta-G solvation = -3522.917469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.77293 -40.92845 -39.75146 -38.65160 -38.04596 -35.16495 -33.14846 -31.95566 -30.24686 -29.55317 -29.41457 -27.69673 -27.13952 -26.05748 -24.00766 -23.62159 -22.78465 -21.68472 -20.42799 -19.49312 -18.75903 -17.89497 -17.62970 -17.45971 -17.37085 -16.84434 -16.56832 -16.48588 -16.12647 -15.75484 -15.69132 -15.28122 -14.86141 -14.54090 -14.43810 -14.29782 -14.02936 -13.76553 -13.69355 -13.64392 -13.53001 -13.49727 -13.27067 -13.21364 -12.84712 -12.68475 -12.44771 -12.25124 -12.14547 -11.82448 -11.53712 -11.28450 -10.64464 -10.24987 -9.89050 -9.60872 -8.36334 -0.29197 0.04133 0.34643 0.49798 0.79086 0.92166 1.29675 1.46197 1.71054 2.03362 2.12975 2.68288 2.80968 2.95380 3.11976 3.21052 3.34496 3.62388 3.75720 3.78849 3.95557 3.97595 4.00865 4.02594 4.15655 4.20086 4.22448 4.29096 4.33267 4.37224 4.44370 4.48657 4.55276 4.62875 4.65109 4.71481 4.76047 4.79874 4.82456 4.83235 4.83901 5.04033 5.09178 5.32628 5.40635 5.50614 5.69570 5.80141 5.95268 6.05279 6.53815 6.95919 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.003901 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.137588 B = 7175.547581 C = 7861.035087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.562 5.562 3 C 0.059 3.941 4 C 0.306 3.694 5 C -0.437 4.437 6 C 0.366 3.634 7 O -0.565 6.565 8 C 0.029 3.971 9 C -0.126 4.126 10 C -0.089 4.089 11 C -0.079 4.079 12 C -0.044 4.044 13 C -0.054 4.054 14 N -0.333 5.333 15 H 0.425 0.575 16 C -0.056 4.056 17 C -0.051 4.051 18 C -0.099 4.099 19 O -0.542 6.542 20 Si 0.964 3.036 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.191 1.191 24 C -0.109 4.109 25 C -0.139 4.139 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.181 0.819 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.150 0.850 36 H 0.205 0.795 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.148 0.852 43 H 0.125 0.875 44 H 0.390 0.610 45 H 0.135 0.865 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.975 -13.631 10.077 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.253 5.253 3 C -0.082 4.082 4 C 0.162 3.838 5 C -0.448 4.448 6 C 0.239 3.761 7 O -0.450 6.450 8 C 0.028 3.972 9 C -0.144 4.144 10 C -0.107 4.107 11 C -0.080 4.080 12 C -0.046 4.046 13 C -0.161 4.161 14 N 0.090 4.910 15 H 0.264 0.736 16 C -0.196 4.196 17 C -0.191 4.191 18 C -0.209 4.209 19 O -0.350 6.350 20 Si 0.784 3.216 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.112 1.112 24 C -0.127 4.127 25 C -0.158 4.158 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.197 0.803 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.168 0.832 36 H 0.221 0.779 37 H 0.142 0.858 38 H 0.163 0.837 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.139 0.861 42 H 0.166 0.834 43 H 0.142 0.858 44 H 0.241 0.759 45 H 0.152 0.848 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.487 -13.996 9.238 17.644 hybrid contribution -0.720 1.035 0.128 1.267 sum 4.766 -12.961 9.366 16.686 Atomic orbital electron populations 1.22616 0.78296 1.05413 1.03088 1.47238 1.07820 1.06364 1.63877 1.22444 0.98286 0.83215 1.04226 1.22858 0.98424 0.84011 0.78485 1.19283 1.05827 0.97987 1.21736 1.22481 0.82967 0.87009 0.83643 1.90520 1.54084 1.33524 1.66879 1.18400 0.93275 0.93177 0.92303 1.21191 0.99568 0.98527 0.95158 1.21274 0.94784 0.95062 0.99563 1.18230 0.95572 0.98007 0.96191 1.21092 0.95824 0.93501 0.94137 1.22845 1.02661 0.86601 1.03968 1.42988 1.18464 1.13184 1.16402 0.73643 1.24441 1.03103 1.08868 0.83163 1.24415 1.10727 0.87179 0.96808 1.25377 1.02469 0.90491 1.02533 1.86816 1.50287 1.28852 1.68998 0.85278 0.75507 0.83210 0.77582 1.18941 1.20092 1.11175 1.21524 0.99509 0.96773 0.94902 1.21410 0.96725 0.97141 1.00481 0.91174 0.87643 0.90650 0.89753 0.88394 0.89596 0.80254 0.89556 0.87854 0.83240 0.77875 0.85758 0.83677 0.85175 0.84975 0.86149 0.83408 0.85792 0.75913 0.84766 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -1.11 8.97 127.77 1.15 0.03 16 2 N -0.56 13.85 3.31 -754.18 -2.49 11.35 16 3 C 0.06 -1.71 10.75 127.77 1.37 -0.34 16 4 C 0.31 -7.08 9.99 83.91 0.84 -6.24 16 5 C -0.44 7.16 4.79 -20.03 -0.10 7.06 16 6 C 0.37 -3.98 8.84 68.55 0.61 -3.38 16 7 O -0.56 0.72 16.98 -3.60 -0.06 0.66 16 8 C 0.03 -0.48 5.01 -20.00 -0.10 -0.58 16 9 C -0.13 2.24 9.27 22.45 0.21 2.44 16 10 C -0.09 2.40 9.69 22.48 0.22 2.61 16 11 C -0.08 2.43 4.85 -20.09 -0.10 2.33 16 12 C -0.04 1.88 3.87 -18.53 -0.07 1.81 16 13 C -0.05 2.76 7.91 82.25 0.65 3.41 16 14 N -0.33 19.80 0.59 -752.86 -0.44 19.36 16 15 H 0.42 -26.09 5.11 -89.70 -0.46 -26.55 16 16 C -0.06 3.40 9.14 127.69 1.17 4.57 16 17 C -0.05 3.06 9.14 127.69 1.17 4.22 16 18 C -0.10 4.14 2.29 71.24 0.16 4.31 16 19 O -0.54 18.06 12.22 -148.98 -1.82 16.24 16 20 Si 0.96 -33.31 26.11 68.60 1.79 -31.52 16 21 H -0.26 7.17 5.42 99.48 0.54 7.71 16 22 H -0.28 7.37 7.11 99.48 0.71 8.08 16 23 H -0.19 8.10 7.11 99.48 0.71 8.81 16 24 C -0.11 2.70 9.17 22.48 0.21 2.90 16 25 C -0.14 2.73 9.70 22.45 0.22 2.94 16 26 H 0.07 -1.42 7.39 -2.39 -0.02 -1.44 16 27 H 0.11 -2.81 7.57 -2.39 -0.02 -2.83 16 28 H 0.08 -1.69 5.38 -2.39 -0.01 -1.71 16 29 H 0.08 -2.53 8.14 -2.39 -0.02 -2.55 16 30 H 0.10 -2.92 7.56 -2.39 -0.02 -2.93 16 31 H 0.09 -2.57 8.14 -2.39 -0.02 -2.58 16 32 H 0.18 -5.16 8.06 -2.91 -0.02 -5.18 16 33 H 0.09 -1.38 5.35 -2.91 -0.02 -1.39 16 34 H 0.10 -1.50 8.06 -2.91 -0.02 -1.52 16 35 H 0.15 -4.98 8.06 -2.91 -0.02 -5.00 16 36 H 0.20 -10.59 8.05 -2.91 -0.02 -10.61 16 37 H 0.12 -7.49 8.14 -2.39 -0.02 -7.51 16 38 H 0.15 -9.16 8.14 -2.39 -0.02 -9.18 16 39 H 0.13 -7.82 8.14 -2.39 -0.02 -7.84 16 40 H 0.13 -7.85 8.14 -2.39 -0.02 -7.87 16 41 H 0.12 -6.93 8.14 -2.39 -0.02 -6.95 16 42 H 0.15 -9.22 8.14 -2.39 -0.02 -9.24 16 43 H 0.12 -6.56 6.26 -2.39 -0.01 -6.58 16 44 H 0.39 -15.27 9.04 -74.06 -0.67 -15.94 16 45 H 0.13 -3.64 4.73 -2.91 -0.01 -3.65 16 46 H 0.13 -2.70 8.06 -2.91 -0.02 -2.72 16 Total: 1.00 -77.98 366.02 5.01 -72.97 By element: Atomic # 1 Polarization: -117.61 SS G_CDS: 0.44 Total: -117.17 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: 7.60 Total: 28.11 kcal Atomic # 7 Polarization: 33.65 SS G_CDS: -2.94 Total: 30.71 kcal Atomic # 8 Polarization: 18.78 SS G_CDS: -1.88 Total: 16.90 kcal Atomic # 14 Polarization: -33.31 SS G_CDS: 1.79 Total: -31.52 kcal Total: -77.98 5.01 -72.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725416681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.177 kcal (2) G-P(sol) polarization free energy of solvation -77.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds