Wall clock time and date at job start Mon Mar 23 2020 11:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.46690 * 2 1 4 4 H 1.48504 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47199 * 299.99728 * 3 2 1 6 6 H 1.48498 * 109.47551 * 60.00020 * 3 2 1 7 7 C 1.50698 * 109.47185 * 119.99759 * 2 1 3 8 8 N 1.31173 * 122.06767 * 209.97597 * 7 2 1 9 9 C 1.30454 * 117.02320 * 180.02562 * 8 7 2 10 10 S 1.76182 * 109.03932 * 0.24650 * 9 8 7 11 11 C 1.33842 * 122.06873 * 30.00140 * 7 2 1 12 12 C 1.47208 * 125.48097 * 179.97438 * 9 8 7 13 13 N 1.30410 * 125.46604 * 0.02562 * 12 9 8 14 14 C 1.31193 * 117.03912 * 179.97438 * 13 12 9 15 15 C 1.33944 * 115.82816 * 0.02562 * 14 13 12 16 16 Br 1.89097 * 125.89098 * 180.02562 * 15 14 13 17 17 S 1.76168 * 125.46745 * 180.02562 * 12 9 8 18 18 H 1.09001 * 109.46981 * 239.99839 * 2 1 3 19 19 H 1.07993 * 125.88671 * 359.97438 * 11 7 2 20 20 H 1.08000 * 122.08800 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 3.5349 1.7566 -0.0006 5 1 1.5548 2.4565 -1.2126 6 1 1.5549 2.4566 1.2124 7 6 1.9313 -0.7103 1.2305 8 7 3.0713 -0.3971 1.7988 9 6 3.4111 -1.0762 2.8596 10 16 2.1606 -2.2687 3.2035 11 6 1.2422 -1.7002 1.8107 12 6 4.6440 -0.8818 3.6399 13 7 5.5720 -0.0026 3.3820 14 6 6.6055 0.0281 4.1896 15 6 6.5870 -0.8568 5.1949 16 35 7.9224 -1.0590 6.5184 17 16 5.1028 -1.7995 5.0720 18 1 1.7923 -0.5139 -0.8900 19 1 0.2896 -2.0868 1.4800 20 1 7.4204 0.7235 4.0523 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725485454.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:24 Heat of formation + Delta-G solvation = 10.355570 kcal Electronic energy + Delta-G solvation = -12349.226052 eV Core-core repulsion = 9810.461257 eV Total energy + Delta-G solvation = -2538.764794 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 304.892 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.07179 -40.31705 -34.31795 -33.34393 -31.45409 -29.51506 -27.70218 -26.31740 -23.95317 -21.41466 -20.12485 -19.31489 -18.34736 -17.21857 -16.43996 -16.02043 -15.78284 -15.35625 -14.77212 -14.69289 -14.05596 -13.62583 -13.15353 -12.94722 -12.59213 -12.18310 -11.93009 -11.82382 -11.61856 -10.97269 -10.80835 -10.75780 -10.51758 -10.23466 -9.30919 -8.49418 -7.80831 -1.37942 -0.55798 -0.06721 0.02102 0.11037 0.40376 0.60950 1.36397 1.45998 1.53975 1.70814 1.98271 2.61012 2.73773 3.36559 3.91055 4.05423 4.53752 4.70669 4.75966 5.26484 5.37047 6.32816 6.70070 7.62739 Molecular weight = 304.89amu Principal moments of inertia in cm(-1) A = 0.036441 B = 0.004446 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.187380 B = 6296.266841 C = 7014.349728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.928 6.928 2 C 0.012 3.988 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.305 1.305 7 C 0.032 3.968 8 N -0.447 5.447 9 C 0.078 3.922 10 S 0.163 5.837 11 C -0.203 4.203 12 C 0.124 3.876 13 N -0.462 5.462 14 C 0.082 3.918 15 C -0.241 4.241 16 Br 0.062 6.938 17 S 0.233 5.767 18 H -0.007 1.007 19 H 0.177 0.823 20 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.794 -7.263 18.424 27.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.877 6.877 2 C -0.108 4.108 3 Si 0.805 3.195 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.232 1.232 7 C -0.100 4.100 8 N -0.167 5.167 9 C -0.199 4.199 10 S 0.415 5.585 11 C -0.342 4.342 12 C -0.153 4.153 13 N -0.179 5.179 14 C -0.074 4.074 15 C -0.443 4.443 16 Br 0.145 6.855 17 S 0.486 5.514 18 H 0.010 0.990 19 H 0.194 0.806 20 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 18.952 -7.384 19.609 28.253 hybrid contribution -0.413 0.959 -1.517 1.841 sum 18.539 -6.425 18.093 26.689 Atomic orbital electron populations 1.94874 1.06213 1.93153 1.93440 1.22975 0.97690 1.01823 0.88336 0.85663 0.75930 0.81644 0.76226 1.19241 1.21581 1.23185 1.22260 0.88597 0.96938 1.02180 1.66320 1.16208 1.26510 1.07666 1.24621 0.97980 0.99958 0.97337 1.83715 1.12487 1.34406 1.27922 1.26931 1.05765 1.02383 0.99150 1.24424 0.95156 0.97726 0.97951 1.66778 1.01794 1.20347 1.28965 1.22209 0.97011 0.99056 0.89172 1.28087 1.03011 1.07660 1.05582 1.96782 1.45048 1.97057 1.46660 1.84689 1.11611 1.33265 1.21835 0.98984 0.80601 0.77231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.93 -69.03 17.34 -148.98 -2.58 -71.62 14 2 C 0.01 0.77 3.09 71.24 0.22 0.99 14 3 Si 0.97 54.07 27.58 68.60 1.89 55.96 14 4 H -0.27 -13.66 7.11 99.48 0.71 -12.96 14 5 H -0.29 -15.68 7.11 99.48 0.71 -14.97 14 6 H -0.30 -17.64 7.11 99.48 0.71 -16.94 14 7 C 0.03 1.73 5.94 41.66 0.25 1.98 14 8 N -0.45 -22.23 8.86 -178.27 -1.58 -23.81 14 9 C 0.08 3.11 7.52 87.26 0.66 3.77 14 10 S 0.16 5.54 23.26 -56.49 -1.31 4.23 14 11 C -0.20 -9.55 10.57 66.82 0.71 -8.85 14 12 C 0.12 4.11 7.51 87.26 0.66 4.77 14 13 N -0.46 -15.58 10.58 -190.27 -2.01 -17.59 14 14 C 0.08 1.99 11.20 83.81 0.94 2.93 14 15 C -0.24 -5.00 7.07 66.84 0.47 -4.53 14 16 Br 0.06 0.94 34.09 -20.37 -0.69 0.24 14 17 S 0.23 5.23 23.26 -56.49 -1.31 3.92 14 18 H -0.01 -0.41 7.96 -2.39 -0.02 -0.43 14 19 H 0.18 8.48 7.88 -2.91 -0.02 8.46 14 20 H 0.21 3.76 8.06 -2.91 -0.02 3.73 14 Total: -1.00 -79.07 243.10 -1.65 -80.72 By element: Atomic # 1 Polarization: -35.16 SS G_CDS: 2.06 Total: -33.10 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 3.90 Total: 1.05 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -3.59 Total: -41.40 kcal Atomic # 8 Polarization: -69.03 SS G_CDS: -2.58 Total: -71.62 kcal Atomic # 14 Polarization: 54.07 SS G_CDS: 1.89 Total: 55.96 kcal Atomic # 16 Polarization: 10.77 SS G_CDS: -2.63 Total: 8.14 kcal Atomic # 35 Polarization: 0.94 SS G_CDS: -0.69 Total: 0.24 kcal Total: -79.07 -1.65 -80.72 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725485454.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.080 kcal (2) G-P(sol) polarization free energy of solvation -79.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds