Wall clock time and date at job start Mon Mar 23 2020 11:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47157 * 2 1 4 4 C 1.50698 * 109.47273 * 239.99599 * 2 1 3 5 5 C 1.38228 * 120.00200 * 300.28442 * 4 2 1 6 6 C 1.38238 * 120.00120 * 180.23540 * 5 4 2 7 7 C 1.38234 * 119.99675 * 359.47825 * 6 5 4 8 8 C 1.50703 * 120.00257 * 180.27927 * 7 6 5 9 9 O 1.42900 * 109.47323 * 300.00805 * 8 7 6 10 10 Si 1.86294 * 109.47564 * 180.02562 * 8 7 6 11 11 H 1.48504 * 109.47115 * 60.00190 * 10 8 7 12 12 H 1.48496 * 109.47246 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47472 * 300.00577 * 10 8 7 14 14 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 15 15 C 1.38234 * 119.99739 * 119.99807 * 4 2 1 16 16 C 1.53005 * 109.46829 * 119.99705 * 2 1 3 17 17 H 1.09007 * 110.32998 * 62.25195 * 16 2 1 18 18 C 1.54899 * 110.37098 * 184.61787 * 16 2 1 19 19 C 1.55140 * 101.65306 * 155.76833 * 18 16 2 20 20 H 1.09002 * 110.85941 * 205.77734 * 19 18 16 21 21 C 1.53001 * 110.70159 * 82.61668 * 19 18 16 22 22 C 1.53001 * 109.47339 * 71.40186 * 21 19 18 23 23 C 1.53003 * 109.47018 * 179.97438 * 22 21 19 24 24 O 1.42909 * 109.46746 * 179.97438 * 23 22 21 25 25 C 1.54276 * 103.02164 * 324.23496 * 19 18 16 26 26 H 1.09003 * 117.75469 * 241.51048 * 25 19 18 27 27 C 1.52937 * 118.38415 * 85.60708 * 25 19 18 28 28 N 1.46974 * 58.85242 * 266.36565 * 27 25 19 29 29 H 1.00900 * 118.65308 * 249.20575 * 28 27 25 30 30 H 1.08997 * 109.46926 * 300.00046 * 1 2 3 31 31 H 1.08997 * 109.46646 * 60.00139 * 1 2 3 32 32 H 1.09005 * 109.46658 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00256 * 359.97438 * 5 4 2 34 34 H 1.08002 * 120.00519 * 179.76445 * 6 5 4 35 35 H 1.09005 * 109.46634 * 60.00467 * 8 7 6 36 36 H 0.96693 * 113.99982 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.00460 * 180.02562 * 14 7 6 38 38 H 1.08001 * 120.00310 * 0.02562 * 15 4 2 39 39 H 1.09000 * 110.99518 * 273.86697 * 18 16 2 40 40 H 1.09006 * 110.98762 * 37.68208 * 18 16 2 41 41 H 1.09003 * 109.46960 * 191.40037 * 21 19 18 42 42 H 1.08995 * 109.47361 * 311.39715 * 21 19 18 43 43 H 1.09003 * 109.46974 * 299.99843 * 22 21 19 44 44 H 1.09003 * 109.47487 * 59.99789 * 22 21 19 45 45 H 1.08994 * 109.47319 * 299.99566 * 23 22 21 46 46 H 1.09002 * 109.46911 * 60.00230 * 23 22 21 47 47 H 0.96701 * 113.99115 * 180.02562 * 24 23 22 48 48 H 1.09004 * 117.60995 * 159.21137 * 27 25 19 49 49 H 1.08997 * 117.74932 * 13.46133 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6937 -2.0322 -1.4521 6 6 2.1585 -2.6853 -2.5782 7 6 2.9532 -2.0135 -3.4882 8 6 3.4549 -2.7236 -4.7191 9 8 4.2483 -3.8470 -4.3310 10 14 4.4906 -1.5530 -5.7327 11 1 5.6462 -1.0877 -4.9243 12 1 4.9844 -2.2526 -6.9460 13 1 3.6667 -0.3853 -6.1361 14 6 3.2876 -0.6902 -3.2692 15 6 2.8271 -0.0387 -2.1403 16 6 2.0400 -0.7212 1.2493 17 1 1.7175 -1.7625 1.2437 18 6 3.5844 -0.6330 1.3303 19 6 3.8291 -0.8111 2.8519 20 1 4.7662 -0.3421 3.1518 21 6 3.8229 -2.2935 3.2307 22 6 5.0897 -2.9625 2.6937 23 6 5.0837 -4.4448 3.0732 24 8 6.2667 -5.0698 2.5710 25 6 2.6265 -0.0812 3.4852 26 1 2.8331 0.7760 4.1260 27 6 1.3206 -0.8557 3.6692 28 7 1.5581 -0.0396 2.4701 29 1 1.0183 0.8035 2.3439 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.0693 -2.5558 -0.7433 34 1 1.8970 -3.7191 -2.7496 35 1 2.6067 -3.0654 -5.3123 36 1 4.6048 -4.3523 -5.0743 37 1 3.9081 -0.1652 -3.9803 38 1 3.0884 0.9952 -1.9693 39 1 4.0518 -1.4376 0.7627 40 1 3.9382 0.3400 0.9892 41 1 3.7926 -2.3910 4.3160 42 1 2.9461 -2.7754 2.7982 43 1 5.1199 -2.8651 1.6085 44 1 5.9665 -2.4807 3.1263 45 1 5.0537 -4.5419 4.1584 46 1 4.2069 -4.9269 2.6408 47 1 6.3298 -6.0130 2.7746 48 1 0.6090 -0.4788 4.4039 49 1 1.3533 -1.9394 3.5574 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085547922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:20 Heat of formation + Delta-G solvation = 77.453894 kcal Electronic energy + Delta-G solvation = -26504.274172 eV Core-core repulsion = 23017.053678 eV Total energy + Delta-G solvation = -3487.220494 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.198 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.14418 -42.06889 -39.47207 -39.22112 -37.87619 -37.62253 -34.13968 -33.24565 -33.22880 -31.70962 -28.80907 -28.01629 -27.68761 -26.19229 -25.46373 -24.71065 -23.93829 -22.97322 -22.85943 -21.40798 -20.11174 -19.39390 -19.35069 -18.76368 -18.37009 -17.94274 -17.83465 -17.64393 -17.17715 -17.03443 -16.84019 -16.65294 -16.43253 -16.19657 -15.87227 -15.72092 -15.52744 -15.49688 -15.36137 -15.11620 -14.90820 -14.85554 -14.54249 -14.18254 -14.11005 -14.01102 -13.89622 -13.78706 -13.33910 -13.27711 -13.17883 -13.13261 -12.80066 -12.66811 -12.01502 -11.36626 -11.13271 -10.85235 -1.76943 -1.05464 -0.80033 -0.73411 0.06464 0.25855 0.49519 0.60688 0.65758 0.77703 1.07438 1.11312 1.32380 1.40545 1.55534 1.66079 1.80077 1.84904 1.87946 2.01750 2.17136 2.23767 2.27286 2.35670 2.36647 2.43839 2.51407 2.69853 2.73697 2.75525 2.77556 2.87296 2.91305 2.98379 3.03741 3.07821 3.10906 3.15586 3.22535 3.30529 3.37057 3.39271 3.43483 3.53390 3.72228 3.78154 3.81740 3.88304 4.13991 4.17780 4.39745 4.71523 5.65576 5.65678 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.011477 B = 0.004932 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.125491 B = 5675.731402 C = 7378.508588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.055 4.055 3 H 0.101 0.899 4 C -0.094 4.094 5 C -0.113 4.113 6 C -0.082 4.082 7 C -0.056 4.056 8 C -0.088 4.088 9 O -0.545 6.545 10 Si 0.941 3.059 11 H -0.247 1.247 12 H -0.250 1.250 13 H -0.249 1.249 14 C -0.116 4.116 15 C -0.098 4.098 16 C 0.059 3.941 17 H 0.138 0.862 18 C -0.131 4.131 19 C -0.086 4.086 20 H 0.129 0.871 21 C -0.120 4.120 22 C -0.124 4.124 23 C 0.074 3.926 24 O -0.574 6.574 25 C 0.027 3.973 26 H 0.188 0.812 27 C 0.015 3.985 28 N -0.468 5.468 29 H 0.437 0.563 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.387 0.613 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.045 0.955 47 H 0.388 0.612 48 H 0.174 0.826 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 5.206 13.577 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.074 4.074 3 H 0.119 0.881 4 C -0.095 4.095 5 C -0.131 4.131 6 C -0.100 4.100 7 C -0.056 4.056 8 C -0.198 4.198 9 O -0.352 6.352 10 Si 0.763 3.237 11 H -0.170 1.170 12 H -0.174 1.174 13 H -0.173 1.173 14 C -0.134 4.134 15 C -0.116 4.116 16 C -0.041 4.041 17 H 0.156 0.844 18 C -0.168 4.168 19 C -0.105 4.105 20 H 0.147 0.853 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.004 4.004 24 O -0.380 6.380 25 C -0.074 4.074 26 H 0.205 0.795 27 C -0.104 4.104 28 N -0.058 5.058 29 H 0.281 0.719 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.235 0.765 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.237 0.763 48 H 0.192 0.808 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.682 6.523 13.167 16.142 hybrid contribution -0.744 -0.642 -0.340 1.040 sum -7.426 5.881 12.827 15.946 Atomic orbital electron populations 1.22081 0.92260 1.03907 1.03564 1.20467 0.97321 0.99744 0.89827 0.88109 1.19176 1.00315 0.94451 0.95560 1.20929 1.00061 0.93845 0.98241 1.21054 0.95650 1.00253 0.93041 1.19450 0.96881 0.93472 0.95812 1.24755 0.99901 0.95630 0.99523 1.86446 1.69524 1.42113 1.37099 0.85778 0.80049 0.78937 0.78972 1.16983 1.17366 1.17278 1.21105 0.99863 0.94459 0.97984 1.20920 0.97076 0.99841 0.93810 1.24314 0.97740 0.99899 0.82148 0.84409 1.23462 0.90364 1.07359 0.95655 1.22321 0.97072 0.97255 0.93870 0.85289 1.21666 0.99339 0.91758 1.02956 1.21521 0.97453 0.94751 1.02411 1.22098 0.87726 0.92999 0.97578 1.86472 1.42407 1.28340 1.80798 1.26464 0.87187 1.04318 0.89445 0.79462 1.26163 0.99151 1.01741 0.83364 1.47932 1.25826 1.21999 1.10033 0.71925 0.92786 0.89659 0.90909 0.85982 0.84965 0.90029 0.76507 0.85539 0.85323 0.85714 0.87801 0.89376 0.91279 0.90588 0.90190 0.93378 0.93714 0.76347 0.80835 0.81759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 3.49 8.84 37.16 0.33 3.82 16 2 C -0.05 1.24 2.12 -91.77 -0.19 1.04 16 3 H 0.10 -2.35 7.86 -51.93 -0.41 -2.76 16 4 C -0.09 1.69 4.26 -104.63 -0.45 1.24 16 5 C -0.11 1.84 8.70 -39.58 -0.34 1.50 16 6 C -0.08 1.07 9.61 -39.58 -0.38 0.69 16 7 C -0.06 0.65 5.42 -104.62 -0.57 0.08 16 8 C -0.09 0.99 2.81 36.01 0.10 1.09 16 9 O -0.55 5.67 12.74 -35.23 -0.45 5.22 16 10 Si 0.94 -9.71 25.07 -169.99 -4.26 -13.97 16 11 H -0.25 2.25 7.11 56.52 0.40 2.66 16 12 H -0.25 2.26 7.11 56.52 0.40 2.66 16 13 H -0.25 2.42 7.11 56.52 0.40 2.82 16 14 C -0.12 1.45 8.67 -39.58 -0.34 1.11 16 15 C -0.10 1.52 9.67 -39.58 -0.38 1.13 16 16 C 0.06 -1.51 1.91 -66.17 -0.13 -1.64 16 17 H 0.14 -3.58 6.75 -51.93 -0.35 -3.93 16 18 C -0.13 3.15 5.38 -24.60 -0.13 3.02 16 19 C -0.09 2.19 3.01 -88.82 -0.27 1.92 16 20 H 0.13 -3.16 8.14 -51.93 -0.42 -3.59 16 21 C -0.12 2.77 3.89 -26.73 -0.10 2.67 16 22 C -0.12 2.22 5.47 -26.73 -0.15 2.08 16 23 C 0.07 -1.13 7.05 37.16 0.26 -0.87 16 24 O -0.57 6.50 13.66 -35.23 -0.48 6.02 16 25 C 0.03 -0.77 7.20 -66.78 -0.48 -1.25 16 26 H 0.19 -5.69 8.14 -51.93 -0.42 -6.11 16 27 C 0.02 -0.46 10.10 -3.82 -0.04 -0.50 16 28 N -0.47 13.68 2.40 -215.54 -0.52 13.16 16 29 H 0.44 -13.39 7.68 -39.29 -0.30 -13.69 16 30 H 0.05 -1.28 6.89 -51.93 -0.36 -1.64 16 31 H 0.08 -1.60 8.14 -51.93 -0.42 -2.02 16 32 H 0.07 -1.52 7.37 -51.93 -0.38 -1.90 16 33 H 0.12 -2.30 7.12 -52.48 -0.37 -2.67 16 34 H 0.13 -1.70 8.06 -52.49 -0.42 -2.12 16 35 H 0.08 -1.02 7.96 -51.93 -0.41 -1.43 16 36 H 0.39 -5.34 8.74 45.56 0.40 -4.94 16 37 H 0.13 -1.56 4.88 -52.49 -0.26 -1.82 16 38 H 0.13 -2.21 7.95 -52.49 -0.42 -2.63 16 39 H 0.12 -2.71 6.61 -51.93 -0.34 -3.05 16 40 H 0.10 -2.47 8.04 -51.93 -0.42 -2.88 16 41 H 0.09 -2.05 8.14 -51.93 -0.42 -2.47 16 42 H 0.07 -1.69 6.10 -51.93 -0.32 -2.01 16 43 H 0.08 -1.29 6.73 -51.93 -0.35 -1.64 16 44 H 0.08 -1.32 8.14 -51.93 -0.42 -1.74 16 45 H 0.05 -0.76 8.14 -51.93 -0.42 -1.18 16 46 H 0.04 -0.72 8.14 -51.93 -0.42 -1.15 16 47 H 0.39 -5.63 9.12 45.56 0.42 -5.21 16 48 H 0.17 -5.44 8.14 -51.93 -0.42 -5.86 16 49 H 0.16 -4.90 6.43 -51.93 -0.33 -5.23 16 LS Contribution 368.72 15.07 5.56 5.56 Total: 1.00 -32.21 368.72 -10.22 -42.44 By element: Atomic # 1 Polarization: -68.73 SS G_CDS: -6.81 Total: -75.54 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: -3.26 Total: 17.12 kcal Atomic # 7 Polarization: 13.68 SS G_CDS: -0.52 Total: 13.16 kcal Atomic # 8 Polarization: 12.17 SS G_CDS: -0.93 Total: 11.24 kcal Atomic # 14 Polarization: -9.71 SS G_CDS: -4.26 Total: -13.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.21 -10.22 -42.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085547922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.892 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds