Wall clock time and date at job start Mon Mar 23 2020 11:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47157 * 2 1 4 4 C 1.50698 * 109.47273 * 239.99599 * 2 1 3 5 5 C 1.38228 * 120.00200 * 300.28442 * 4 2 1 6 6 C 1.38238 * 120.00120 * 180.23540 * 5 4 2 7 7 C 1.38234 * 119.99675 * 359.47825 * 6 5 4 8 8 C 1.50703 * 120.00257 * 180.27927 * 7 6 5 9 9 O 1.42900 * 109.47323 * 300.00805 * 8 7 6 10 10 Si 1.86294 * 109.47564 * 180.02562 * 8 7 6 11 11 H 1.48504 * 109.47115 * 60.00190 * 10 8 7 12 12 H 1.48496 * 109.47246 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47472 * 300.00577 * 10 8 7 14 14 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 15 15 C 1.38234 * 119.99739 * 119.99807 * 4 2 1 16 16 C 1.53005 * 109.46829 * 119.99705 * 2 1 3 17 17 H 1.09007 * 110.32998 * 62.25195 * 16 2 1 18 18 C 1.54899 * 110.37098 * 184.61787 * 16 2 1 19 19 C 1.55140 * 101.65306 * 155.76833 * 18 16 2 20 20 H 1.09002 * 110.85941 * 205.77734 * 19 18 16 21 21 C 1.53001 * 110.70159 * 82.61668 * 19 18 16 22 22 C 1.53001 * 109.47339 * 71.40186 * 21 19 18 23 23 C 1.53003 * 109.47018 * 179.97438 * 22 21 19 24 24 O 1.42909 * 109.46746 * 179.97438 * 23 22 21 25 25 C 1.54276 * 103.02164 * 324.23496 * 19 18 16 26 26 H 1.09003 * 117.75469 * 241.51048 * 25 19 18 27 27 C 1.52937 * 118.38415 * 85.60708 * 25 19 18 28 28 N 1.46974 * 58.85242 * 266.36565 * 27 25 19 29 29 H 1.00900 * 118.65308 * 249.20575 * 28 27 25 30 30 H 1.08997 * 109.46926 * 300.00046 * 1 2 3 31 31 H 1.08997 * 109.46646 * 60.00139 * 1 2 3 32 32 H 1.09005 * 109.46658 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00256 * 359.97438 * 5 4 2 34 34 H 1.08002 * 120.00519 * 179.76445 * 6 5 4 35 35 H 1.09005 * 109.46634 * 60.00467 * 8 7 6 36 36 H 0.96693 * 113.99982 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.00460 * 180.02562 * 14 7 6 38 38 H 1.08001 * 120.00310 * 0.02562 * 15 4 2 39 39 H 1.09000 * 110.99518 * 273.86697 * 18 16 2 40 40 H 1.09006 * 110.98762 * 37.68208 * 18 16 2 41 41 H 1.09003 * 109.46960 * 191.40037 * 21 19 18 42 42 H 1.08995 * 109.47361 * 311.39715 * 21 19 18 43 43 H 1.09003 * 109.46974 * 299.99843 * 22 21 19 44 44 H 1.09003 * 109.47487 * 59.99789 * 22 21 19 45 45 H 1.08994 * 109.47319 * 299.99566 * 23 22 21 46 46 H 1.09002 * 109.46911 * 60.00230 * 23 22 21 47 47 H 0.96701 * 113.99115 * 180.02562 * 24 23 22 48 48 H 1.09004 * 117.60995 * 159.21137 * 27 25 19 49 49 H 1.08997 * 117.74932 * 13.46133 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6937 -2.0322 -1.4521 6 6 2.1585 -2.6853 -2.5782 7 6 2.9532 -2.0135 -3.4882 8 6 3.4549 -2.7236 -4.7191 9 8 4.2483 -3.8470 -4.3310 10 14 4.4906 -1.5530 -5.7327 11 1 5.6462 -1.0877 -4.9243 12 1 4.9844 -2.2526 -6.9460 13 1 3.6667 -0.3853 -6.1361 14 6 3.2876 -0.6902 -3.2692 15 6 2.8271 -0.0387 -2.1403 16 6 2.0400 -0.7212 1.2493 17 1 1.7175 -1.7625 1.2437 18 6 3.5844 -0.6330 1.3303 19 6 3.8291 -0.8111 2.8519 20 1 4.7662 -0.3421 3.1518 21 6 3.8229 -2.2935 3.2307 22 6 5.0897 -2.9625 2.6937 23 6 5.0837 -4.4448 3.0732 24 8 6.2667 -5.0698 2.5710 25 6 2.6265 -0.0812 3.4852 26 1 2.8331 0.7760 4.1260 27 6 1.3206 -0.8557 3.6692 28 7 1.5581 -0.0396 2.4701 29 1 1.0183 0.8035 2.3439 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.0693 -2.5558 -0.7433 34 1 1.8970 -3.7191 -2.7496 35 1 2.6067 -3.0654 -5.3123 36 1 4.6048 -4.3523 -5.0743 37 1 3.9081 -0.1652 -3.9803 38 1 3.0884 0.9952 -1.9693 39 1 4.0518 -1.4376 0.7627 40 1 3.9382 0.3400 0.9892 41 1 3.7926 -2.3910 4.3160 42 1 2.9461 -2.7754 2.7982 43 1 5.1199 -2.8651 1.6085 44 1 5.9665 -2.4807 3.1263 45 1 5.0537 -4.5419 4.1584 46 1 4.2069 -4.9269 2.6408 47 1 6.3298 -6.0130 2.7746 48 1 0.6090 -0.4788 4.4039 49 1 1.3533 -1.9394 3.5574 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085547922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:19 Heat of formation + Delta-G solvation = 54.771765 kcal Electronic energy + Delta-G solvation = -26505.257743 eV Core-core repulsion = 23017.053678 eV Total energy + Delta-G solvation = -3488.204065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.198 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.94450 -40.78831 -38.18750 -38.04887 -36.41405 -36.04446 -32.52898 -32.04568 -31.79502 -29.90375 -27.17613 -26.41775 -25.72898 -24.33178 -24.14131 -23.21255 -22.32425 -21.49077 -20.90874 -19.33495 -18.56868 -18.28278 -18.08062 -17.38922 -16.80304 -16.74902 -16.41979 -15.79707 -15.54076 -15.41212 -15.24108 -15.10236 -14.94894 -14.69250 -14.50889 -14.29179 -14.14796 -13.90757 -13.73438 -13.60281 -13.32255 -12.99798 -12.84562 -12.75261 -12.51114 -12.31929 -12.27336 -12.19827 -12.07977 -12.02904 -11.79146 -11.73378 -11.65222 -11.49521 -10.88863 -10.46053 -9.97213 -9.68277 0.10216 0.34587 0.57330 1.07539 1.33234 1.37884 1.59912 1.79381 2.37860 2.54425 2.66321 2.93230 3.15936 3.28637 3.35893 3.47482 3.54991 3.65190 3.80214 3.84107 3.88335 3.93436 3.96770 4.00927 4.06302 4.14438 4.25472 4.32352 4.34774 4.40003 4.40175 4.43033 4.51191 4.57910 4.58723 4.60897 4.70444 4.78487 4.79740 4.87009 4.88084 4.93732 4.96186 4.99837 5.05670 5.24823 5.26529 5.31923 5.35514 5.43686 5.51558 5.92195 6.66740 6.82650 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.011477 B = 0.004932 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.125491 B = 5675.731402 C = 7378.508588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.049 4.049 3 H 0.115 0.885 4 C -0.076 4.076 5 C -0.108 4.108 6 C -0.104 4.104 7 C -0.089 4.089 8 C -0.080 4.080 9 O -0.561 6.561 10 Si 0.967 3.033 11 H -0.269 1.269 12 H -0.268 1.268 13 H -0.260 1.260 14 C -0.144 4.144 15 C -0.108 4.108 16 C 0.073 3.927 17 H 0.148 0.852 18 C -0.137 4.137 19 C -0.084 4.084 20 H 0.118 0.882 21 C -0.113 4.113 22 C -0.125 4.125 23 C 0.061 3.939 24 O -0.610 6.610 25 C 0.035 3.965 26 H 0.210 0.790 27 C 0.027 3.973 28 N -0.459 5.459 29 H 0.449 0.551 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.152 0.848 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.397 0.603 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.395 0.605 48 H 0.198 0.802 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.717 6.427 16.869 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.067 4.067 3 H 0.133 0.867 4 C -0.077 4.077 5 C -0.126 4.126 6 C -0.122 4.122 7 C -0.089 4.089 8 C -0.192 4.192 9 O -0.370 6.370 10 Si 0.793 3.207 11 H -0.194 1.194 12 H -0.193 1.193 13 H -0.184 1.184 14 C -0.162 4.162 15 C -0.125 4.125 16 C -0.028 4.028 17 H 0.165 0.835 18 C -0.175 4.175 19 C -0.102 4.102 20 H 0.136 0.864 21 C -0.150 4.150 22 C -0.163 4.163 23 C -0.016 4.016 24 O -0.419 6.419 25 C -0.066 4.066 26 H 0.227 0.773 27 C -0.092 4.092 28 N -0.050 5.050 29 H 0.295 0.705 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.170 0.830 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.248 0.752 37 H 0.131 0.869 38 H 0.163 0.837 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.245 0.755 48 H 0.215 0.785 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.351 7.750 16.455 20.452 hybrid contribution 0.131 -1.019 -1.335 1.684 sum -9.220 6.732 15.121 18.946 Atomic orbital electron populations 1.22085 0.92164 1.03858 1.03843 1.20411 0.97063 1.00256 0.88987 0.86726 1.19588 0.97784 0.93875 0.96449 1.21262 0.99473 0.94462 0.97415 1.21158 0.96466 1.00205 0.94333 1.19519 0.98758 0.94073 0.96548 1.24657 0.99536 0.94909 1.00053 1.86419 1.69826 1.42475 1.38294 0.85434 0.79066 0.78483 0.77708 1.19403 1.19308 1.18441 1.21179 1.01061 0.94620 0.99340 1.21224 0.97269 1.00718 0.93338 1.23875 0.96379 1.00227 0.82361 0.83471 1.23368 0.91613 1.06104 0.96431 1.22100 0.98745 0.96134 0.93271 0.86428 1.21639 0.97115 0.92931 1.03361 1.21573 0.99668 0.93504 1.01545 1.22449 0.86783 0.94359 0.97991 1.86447 1.44560 1.29325 1.81521 1.26311 0.85883 1.05131 0.89286 0.77301 1.26468 0.98246 1.01965 0.82507 1.47626 1.26025 1.22535 1.08776 0.70462 0.89418 0.92578 0.91143 0.83004 0.85791 0.89183 0.75240 0.86909 0.83718 0.88622 0.88095 0.88413 0.89208 0.92176 0.92281 0.92750 0.92638 0.75500 0.78453 0.81562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 7.24 8.84 71.98 0.64 7.88 16 2 C -0.05 2.22 2.12 -11.54 -0.02 2.20 16 3 H 0.11 -5.49 7.86 -2.39 -0.02 -5.51 16 4 C -0.08 2.65 4.26 -19.87 -0.08 2.56 16 5 C -0.11 3.42 8.70 22.27 0.19 3.61 16 6 C -0.10 2.39 9.61 22.27 0.21 2.60 16 7 C -0.09 1.72 5.42 -19.87 -0.11 1.61 16 8 C -0.08 1.49 2.81 71.24 0.20 1.69 16 9 O -0.56 9.58 12.74 -148.98 -1.90 7.68 16 10 Si 0.97 -15.71 25.07 68.60 1.72 -13.99 16 11 H -0.27 3.53 7.11 99.48 0.71 4.24 16 12 H -0.27 3.74 7.11 99.48 0.71 4.45 16 13 H -0.26 3.91 7.11 99.48 0.71 4.62 16 14 C -0.14 3.03 8.67 22.27 0.19 3.22 16 15 C -0.11 3.07 9.67 22.27 0.22 3.28 16 16 C 0.07 -3.82 1.91 45.38 0.09 -3.74 16 17 H 0.15 -7.93 6.75 -2.38 -0.02 -7.94 16 18 C -0.14 6.50 5.38 31.98 0.17 6.67 16 19 C -0.08 4.23 3.01 -9.63 -0.03 4.20 16 20 H 0.12 -5.63 8.14 -2.39 -0.02 -5.65 16 21 C -0.11 5.21 3.89 30.60 0.12 5.33 16 22 C -0.13 4.17 5.47 30.60 0.17 4.34 16 23 C 0.06 -1.73 7.05 71.98 0.51 -1.23 16 24 O -0.61 11.76 13.66 -148.98 -2.04 9.73 16 25 C 0.03 -2.07 7.20 45.22 0.33 -1.75 16 26 H 0.21 -13.31 8.14 -2.39 -0.02 -13.33 16 27 C 0.03 -1.68 10.10 86.27 0.87 -0.81 16 28 N -0.46 27.97 2.40 -835.85 -2.01 25.97 16 29 H 0.45 -29.05 7.68 -89.69 -0.69 -29.74 16 30 H 0.09 -4.46 6.89 -2.39 -0.02 -4.47 16 31 H 0.06 -2.08 8.14 -2.39 -0.02 -2.10 16 32 H 0.07 -3.04 7.37 -2.38 -0.02 -3.06 16 33 H 0.15 -5.79 7.12 -2.91 -0.02 -5.81 16 34 H 0.12 -2.78 8.06 -2.91 -0.02 -2.81 16 35 H 0.09 -1.92 7.96 -2.38 -0.02 -1.94 16 36 H 0.40 -9.56 8.74 -74.06 -0.65 -10.21 16 37 H 0.11 -2.23 4.88 -2.91 -0.01 -2.24 16 38 H 0.15 -4.73 7.95 -2.91 -0.02 -4.75 16 39 H 0.10 -3.90 6.61 -2.39 -0.02 -3.92 16 40 H 0.10 -4.69 8.04 -2.38 -0.02 -4.71 16 41 H 0.10 -4.62 8.14 -2.39 -0.02 -4.64 16 42 H 0.09 -4.48 6.10 -2.39 -0.01 -4.50 16 43 H 0.06 -1.81 6.73 -2.39 -0.02 -1.82 16 44 H 0.06 -1.73 8.14 -2.39 -0.02 -1.75 16 45 H 0.05 -1.63 8.14 -2.39 -0.02 -1.64 16 46 H 0.06 -1.71 8.14 -2.39 -0.02 -1.73 16 47 H 0.40 -10.15 9.12 -74.06 -0.68 -10.82 16 48 H 0.20 -13.21 8.14 -2.38 -0.02 -13.23 16 49 H 0.17 -10.43 6.43 -2.39 -0.02 -10.44 16 Total: 1.00 -73.53 368.72 -0.86 -74.39 By element: Atomic # 1 Polarization: -145.16 SS G_CDS: -0.30 Total: -145.45 kcal Atomic # 6 Polarization: 38.02 SS G_CDS: 3.66 Total: 41.68 kcal Atomic # 7 Polarization: 27.97 SS G_CDS: -2.01 Total: 25.97 kcal Atomic # 8 Polarization: 21.34 SS G_CDS: -3.93 Total: 17.41 kcal Atomic # 14 Polarization: -15.71 SS G_CDS: 1.72 Total: -13.99 kcal Total: -73.53 -0.86 -74.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085547922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.158 kcal (2) G-P(sol) polarization free energy of solvation -73.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds