Wall clock time and date at job start Mon Mar 23 2020 11:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47495 * 2 1 4 4 H 1.48500 * 109.46776 * 306.27330 * 3 2 1 5 5 H 1.48498 * 109.47137 * 66.26865 * 3 2 1 6 6 H 1.48493 * 109.47749 * 186.27489 * 3 2 1 7 7 C 1.53004 * 109.47378 * 239.99772 * 2 1 3 8 8 H 1.08998 * 109.69768 * 305.88149 * 7 2 1 9 9 C 1.53617 * 109.66313 * 66.47313 * 7 2 1 10 10 C 1.53046 * 109.24253 * 174.55272 * 9 7 2 11 11 C 1.53035 * 109.53289 * 298.51024 * 10 9 7 12 12 C 1.53190 * 109.31692 * 61.36842 * 11 10 9 13 13 N 1.46927 * 109.58626 * 185.52581 * 7 2 1 14 14 C 1.34774 * 120.63292 * 6.62628 * 13 7 2 15 15 S 1.70965 * 124.94338 * 175.38538 * 14 13 7 16 16 C 1.76166 * 90.36010 * 180.02562 * 15 14 13 17 17 C 1.33412 * 108.09615 * 359.97438 * 16 15 14 18 18 Br 1.89104 * 122.71741 * 179.97438 * 17 16 15 19 19 N 1.29720 * 124.94100 * 355.40874 * 14 13 7 20 20 H 0.96696 * 113.99605 * 54.92446 * 1 2 3 21 21 H 1.09008 * 109.47372 * 119.99855 * 2 1 3 22 22 H 1.08992 * 109.63793 * 54.55859 * 9 7 2 23 23 H 1.09005 * 109.43214 * 294.41859 * 9 7 2 24 24 H 1.08992 * 109.45683 * 178.48703 * 10 9 7 25 25 H 1.08996 * 109.45969 * 58.52801 * 10 9 7 26 26 H 1.08997 * 109.50063 * 301.41024 * 11 10 9 27 27 H 1.09008 * 109.49395 * 181.31426 * 11 10 9 28 28 H 1.09001 * 109.58915 * 185.57662 * 12 11 10 29 29 H 1.08992 * 109.70625 * 65.21680 * 12 11 10 30 30 H 1.08003 * 125.94722 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 1.4341 2.4992 -1.1288 5 1 1.6839 2.4109 1.2817 6 1 3.5271 1.7593 -0.1530 7 6 1.9391 -0.7213 -1.2492 8 1 1.4945 -1.7148 -1.3071 9 6 1.5670 0.0874 -2.5012 10 6 2.1971 -0.5694 -3.7316 11 6 3.7209 -0.5641 -3.5905 12 6 4.1180 -1.3750 -2.3529 13 7 3.4023 -0.8393 -1.1869 14 6 4.0746 -0.4684 -0.0793 15 16 5.7570 -0.6614 0.1556 16 6 5.6285 0.0670 1.7545 17 6 4.3498 0.3853 1.9634 18 35 3.7463 1.1965 3.5614 19 7 3.5392 0.0866 0.9639 20 1 -0.3932 0.5076 -0.7230 21 1 1.7924 -0.5138 0.8900 22 1 1.9389 1.1071 -2.4025 23 1 0.4828 0.1043 -2.6130 24 1 1.9132 -0.0138 -4.6252 25 1 1.8438 -1.5971 -3.8157 26 1 4.0727 0.4618 -3.4815 27 1 4.1700 -1.0109 -4.4776 28 1 5.1929 -1.2925 -2.1914 29 1 3.8495 -2.4214 -2.4974 30 1 6.4430 0.2278 2.4453 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725486133.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:34 Heat of formation + Delta-G solvation = 51.165700 kcal Electronic energy + Delta-G solvation = -16852.401944 eV Core-core repulsion = 14130.664389 eV Total energy + Delta-G solvation = -2721.737556 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 305.990 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.98225 -39.84809 -37.52631 -35.15052 -32.91029 -32.33312 -30.06486 -28.07645 -26.12480 -24.62104 -23.16459 -21.75834 -20.99761 -19.40897 -18.11150 -17.67722 -17.02900 -16.51314 -16.24338 -15.96181 -15.52628 -15.34181 -14.87839 -14.73121 -14.29344 -14.14867 -13.90062 -12.90499 -12.81450 -12.60004 -12.41601 -12.27642 -11.97362 -11.78667 -11.65050 -11.37585 -11.16255 -10.98737 -10.41452 -10.16830 -9.82621 -8.67901 -0.19997 -0.12156 0.03799 0.95008 1.30474 1.53580 1.62752 1.77771 1.93221 2.33931 3.27969 3.48370 3.58484 3.62797 3.68356 3.77538 3.97639 3.99504 4.22620 4.27142 4.34791 4.51887 4.54138 4.61477 4.71884 4.81718 4.86356 5.09335 5.15474 5.43210 5.79066 6.45849 6.70588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.127 4.127 3 Si 1.010 2.990 4 H -0.297 1.297 5 H -0.257 1.257 6 H -0.274 1.274 7 C 0.128 3.872 8 H 0.093 0.907 9 C -0.153 4.153 10 C -0.118 4.118 11 C -0.138 4.138 12 C 0.118 3.882 13 N -0.554 5.554 14 C 0.332 3.668 15 S 0.140 5.860 16 C -0.263 4.263 17 C 0.108 3.892 18 Br 0.021 6.979 19 N -0.553 5.553 20 H 0.365 0.635 21 H 0.145 0.855 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.412 -1.819 -4.738 5.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.237 4.237 3 Si 0.840 3.160 4 H -0.227 1.227 5 H -0.181 1.181 6 H -0.201 1.201 7 C 0.023 3.977 8 H 0.111 0.889 9 C -0.191 4.191 10 C -0.155 4.155 11 C -0.176 4.176 12 C -0.004 4.004 13 N -0.271 5.271 14 C -0.039 4.039 15 S 0.388 5.612 16 C -0.408 4.408 17 C -0.100 4.100 18 Br 0.103 6.897 19 N -0.286 5.286 20 H 0.211 0.789 21 H 0.162 0.838 22 H 0.092 0.908 23 H 0.105 0.895 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.758 -1.449 -4.340 5.343 hybrid contribution -0.363 0.056 -0.047 0.370 sum 2.395 -1.393 -4.386 5.188 Atomic orbital electron populations 1.86594 1.18480 1.76126 1.53653 1.27840 0.83375 1.12259 1.00225 0.84603 0.78271 0.74190 0.78886 1.22695 1.18091 1.20144 1.22106 0.77626 1.01240 0.96751 0.88915 1.22345 1.02137 1.00078 0.94565 1.21481 0.94531 1.01722 0.97798 1.21980 0.97145 1.01329 0.97176 1.21952 0.96164 0.98496 0.83772 1.45541 1.06487 1.64118 1.10986 1.22466 0.94755 0.96039 0.90625 1.84022 1.03423 1.60836 1.12900 1.26329 1.00081 1.13148 1.01221 1.21266 0.90323 1.03610 0.94801 1.96847 1.90494 1.79025 1.23310 1.65974 1.34927 1.25407 1.02243 0.78867 0.83781 0.90782 0.89507 0.90740 0.91064 0.90931 0.89466 0.89709 0.89515 0.79692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.17 12.92 -35.23 -0.46 -1.62 16 2 C -0.13 -0.28 2.38 37.16 0.09 -0.19 16 3 Si 1.01 3.72 21.30 -169.99 -3.62 0.10 16 4 H -0.30 -1.01 6.59 56.52 0.37 -0.64 16 5 H -0.26 -1.41 7.11 56.52 0.40 -1.00 16 6 H -0.27 -1.29 5.35 56.52 0.30 -0.99 16 7 C 0.13 -0.01 2.83 -67.38 -0.19 -0.20 16 8 H 0.09 -0.04 8.14 -51.93 -0.42 -0.47 16 9 C -0.15 0.23 4.59 -26.39 -0.12 0.11 16 10 C -0.12 0.36 5.88 -26.69 -0.16 0.20 16 11 C -0.14 0.46 6.08 -26.61 -0.16 0.30 16 12 C 0.12 -0.34 6.40 -3.71 -0.02 -0.37 16 13 N -0.55 0.08 2.76 -168.50 -0.46 -0.39 16 14 C 0.33 0.51 5.90 -91.26 -0.54 -0.03 16 15 S 0.14 -0.02 21.37 -107.50 -2.30 -2.32 16 16 C -0.26 -0.27 11.17 29.05 0.32 0.06 16 17 C 0.11 0.32 6.67 -19.12 -0.13 0.19 16 18 Br 0.02 0.06 33.99 -68.01 -2.31 -2.25 16 19 N -0.55 -1.80 2.58 -14.53 -0.04 -1.84 16 20 H 0.36 -0.53 7.47 45.56 0.34 -0.19 16 21 H 0.15 0.55 5.87 -51.92 -0.30 0.25 16 22 H 0.07 -0.01 5.18 -51.93 -0.27 -0.28 16 23 H 0.09 -0.25 7.32 -51.93 -0.38 -0.63 16 24 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 25 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 26 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 27 H 0.09 -0.41 8.14 -51.92 -0.42 -0.84 16 28 H 0.08 -0.30 6.42 -51.93 -0.33 -0.64 16 29 H 0.09 -0.35 8.14 -51.93 -0.42 -0.78 16 30 H 0.19 -0.20 8.06 -52.48 -0.42 -0.62 16 LS Contribution 255.03 15.07 3.84 3.84 Total: 0.00 -4.05 255.03 -9.08 -13.14 By element: Atomic # 1 Polarization: -5.91 SS G_CDS: -2.83 Total: -8.74 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.91 Total: 0.07 kcal Atomic # 7 Polarization: -1.72 SS G_CDS: -0.50 Total: -2.23 kcal Atomic # 8 Polarization: -1.17 SS G_CDS: -0.46 Total: -1.62 kcal Atomic # 14 Polarization: 3.72 SS G_CDS: -3.62 Total: 0.10 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.30 Total: -2.32 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -2.31 Total: -2.25 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -4.05 -9.08 -13.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725486133.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.301 kcal (2) G-P(sol) polarization free energy of solvation -4.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds