Wall clock time and date at job start Mon Mar 23 2020 11:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47495 * 2 1 4 4 H 1.48500 * 109.46776 * 306.27330 * 3 2 1 5 5 H 1.48498 * 109.47137 * 66.26865 * 3 2 1 6 6 H 1.48493 * 109.47749 * 186.27489 * 3 2 1 7 7 C 1.53004 * 109.47378 * 239.99772 * 2 1 3 8 8 H 1.08998 * 109.69768 * 305.88149 * 7 2 1 9 9 C 1.53617 * 109.66313 * 66.47313 * 7 2 1 10 10 C 1.53046 * 109.24253 * 174.55272 * 9 7 2 11 11 C 1.53035 * 109.53289 * 298.51024 * 10 9 7 12 12 C 1.53190 * 109.31692 * 61.36842 * 11 10 9 13 13 N 1.46927 * 109.58626 * 185.52581 * 7 2 1 14 14 C 1.34774 * 120.63292 * 6.62628 * 13 7 2 15 15 S 1.70965 * 124.94338 * 175.38538 * 14 13 7 16 16 C 1.76166 * 90.36010 * 180.02562 * 15 14 13 17 17 C 1.33412 * 108.09615 * 359.97438 * 16 15 14 18 18 Br 1.89104 * 122.71741 * 179.97438 * 17 16 15 19 19 N 1.29720 * 124.94100 * 355.40874 * 14 13 7 20 20 H 0.96696 * 113.99605 * 54.92446 * 1 2 3 21 21 H 1.09008 * 109.47372 * 119.99855 * 2 1 3 22 22 H 1.08992 * 109.63793 * 54.55859 * 9 7 2 23 23 H 1.09005 * 109.43214 * 294.41859 * 9 7 2 24 24 H 1.08992 * 109.45683 * 178.48703 * 10 9 7 25 25 H 1.08996 * 109.45969 * 58.52801 * 10 9 7 26 26 H 1.08997 * 109.50063 * 301.41024 * 11 10 9 27 27 H 1.09008 * 109.49395 * 181.31426 * 11 10 9 28 28 H 1.09001 * 109.58915 * 185.57662 * 12 11 10 29 29 H 1.08992 * 109.70625 * 65.21680 * 12 11 10 30 30 H 1.08003 * 125.94722 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 1.4341 2.4992 -1.1288 5 1 1.6839 2.4109 1.2817 6 1 3.5271 1.7593 -0.1530 7 6 1.9391 -0.7213 -1.2492 8 1 1.4945 -1.7148 -1.3071 9 6 1.5670 0.0874 -2.5012 10 6 2.1971 -0.5694 -3.7316 11 6 3.7209 -0.5641 -3.5905 12 6 4.1180 -1.3750 -2.3529 13 7 3.4023 -0.8393 -1.1869 14 6 4.0746 -0.4684 -0.0793 15 16 5.7570 -0.6614 0.1556 16 6 5.6285 0.0670 1.7545 17 6 4.3498 0.3853 1.9634 18 35 3.7463 1.1965 3.5614 19 7 3.5392 0.0866 0.9639 20 1 -0.3932 0.5076 -0.7230 21 1 1.7924 -0.5138 0.8900 22 1 1.9389 1.1071 -2.4025 23 1 0.4828 0.1043 -2.6130 24 1 1.9132 -0.0138 -4.6252 25 1 1.8438 -1.5971 -3.8157 26 1 4.0727 0.4618 -3.4815 27 1 4.1700 -1.0109 -4.4776 28 1 5.1929 -1.2925 -2.1914 29 1 3.8495 -2.4214 -2.4974 30 1 6.4430 0.2278 2.4453 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725486133.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:34 Heat of formation + Delta-G solvation = 55.891012 kcal Electronic energy + Delta-G solvation = -16852.197039 eV Core-core repulsion = 14130.664389 eV Total energy + Delta-G solvation = -2721.532651 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 305.990 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.99486 -39.83506 -37.61843 -35.03893 -32.83600 -32.41999 -30.12641 -28.04078 -26.09482 -24.53321 -23.15912 -21.63223 -21.03097 -19.39098 -18.22275 -17.70874 -17.09189 -16.55314 -16.20873 -15.87620 -15.55019 -15.31902 -14.86759 -14.69212 -14.24288 -14.20459 -13.83820 -12.91350 -12.80548 -12.64821 -12.37801 -12.30374 -11.96210 -11.75413 -11.57798 -11.46190 -11.36925 -11.02477 -10.56599 -10.25372 -9.93514 -8.68255 -0.25359 -0.15864 -0.04188 0.89998 1.12609 1.26991 1.42879 1.64412 1.71795 2.07784 3.36645 3.56438 3.56897 3.74180 3.83618 3.93595 4.12742 4.19103 4.23878 4.45417 4.50199 4.53005 4.77461 4.84043 4.89190 4.98486 5.07433 5.15411 5.34309 5.48673 5.79938 6.42966 6.71864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.112 4.112 3 Si 1.022 2.978 4 H -0.297 1.297 5 H -0.290 1.290 6 H -0.290 1.290 7 C 0.130 3.870 8 H 0.103 0.897 9 C -0.153 4.153 10 C -0.116 4.116 11 C -0.136 4.136 12 C 0.112 3.888 13 N -0.555 5.555 14 C 0.316 3.684 15 S 0.184 5.816 16 C -0.266 4.266 17 C 0.085 3.915 18 Br 0.007 6.993 19 N -0.577 5.577 20 H 0.380 0.620 21 H 0.128 0.872 22 H 0.057 0.943 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 -2.986 -6.301 7.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.223 4.223 3 Si 0.858 3.142 4 H -0.228 1.228 5 H -0.217 1.217 6 H -0.218 1.218 7 C 0.025 3.975 8 H 0.120 0.880 9 C -0.192 4.192 10 C -0.153 4.153 11 C -0.174 4.174 12 C -0.008 4.008 13 N -0.271 5.271 14 C -0.055 4.055 15 S 0.433 5.567 16 C -0.411 4.411 17 C -0.123 4.123 18 Br 0.090 6.910 19 N -0.311 5.311 20 H 0.229 0.771 21 H 0.145 0.855 22 H 0.075 0.925 23 H 0.119 0.881 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.171 -2.614 -5.943 7.226 hybrid contribution -0.463 0.439 0.420 0.764 sum 2.707 -2.174 -5.524 6.524 Atomic orbital electron populations 1.86549 1.18462 1.76547 1.54873 1.27500 0.83393 1.10448 1.00990 0.84484 0.77275 0.75543 0.76898 1.22778 1.21656 1.21768 1.22063 0.77854 1.01524 0.96025 0.87954 1.22368 1.03189 0.98959 0.94636 1.21491 0.94578 1.02243 0.96982 1.21988 0.97074 1.00696 0.97649 1.22217 0.96359 0.99419 0.82853 1.45813 1.06614 1.63589 1.11122 1.22759 0.95936 0.96042 0.90748 1.83777 1.01616 1.59887 1.11451 1.26655 0.99895 1.12234 1.02321 1.21328 0.91094 1.04977 0.94878 1.96802 1.90771 1.79375 1.24092 1.65877 1.35782 1.26547 1.02940 0.77073 0.85459 0.92461 0.88107 0.90221 0.89908 0.92219 0.87523 0.89062 0.87681 0.78076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.63 12.92 -148.98 -1.93 -4.55 16 2 C -0.11 -0.58 2.38 71.98 0.17 -0.41 16 3 Si 1.02 9.39 21.30 68.60 1.46 10.85 16 4 H -0.30 -2.42 6.59 99.48 0.66 -1.76 16 5 H -0.29 -4.14 7.11 99.48 0.71 -3.43 16 6 H -0.29 -3.29 5.35 99.48 0.53 -2.76 16 7 C 0.13 -0.07 2.83 45.12 0.13 0.05 16 8 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 9 C -0.15 0.57 4.59 30.82 0.14 0.71 16 10 C -0.12 0.89 5.88 30.62 0.18 1.07 16 11 C -0.14 1.12 6.08 30.67 0.19 1.30 16 12 C 0.11 -0.81 6.40 86.36 0.55 -0.26 16 13 N -0.55 0.39 2.76 -687.01 -1.89 -1.50 16 14 C 0.32 1.06 5.90 180.57 1.07 2.12 16 15 S 0.18 -0.13 21.37 -56.49 -1.21 -1.34 16 16 C -0.27 -0.65 11.17 66.73 0.75 0.10 16 17 C 0.09 0.61 6.67 83.56 0.56 1.17 16 18 Br 0.01 0.05 33.99 -20.37 -0.69 -0.64 16 19 N -0.58 -4.48 2.58 -199.90 -0.52 -5.00 16 20 H 0.38 -1.10 7.47 -74.06 -0.55 -1.65 16 21 H 0.13 1.17 5.87 -2.38 -0.01 1.16 16 22 H 0.06 0.00 5.18 -2.39 -0.01 -0.01 16 23 H 0.10 -0.68 7.32 -2.38 -0.02 -0.70 16 24 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 25 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 26 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.11 -1.26 8.14 -2.38 -0.02 -1.28 16 28 H 0.09 -0.79 6.42 -2.39 -0.02 -0.80 16 29 H 0.11 -1.11 8.14 -2.39 -0.02 -1.13 16 30 H 0.20 -0.43 8.06 -2.91 -0.02 -0.45 16 Total: 0.00 -11.28 255.03 0.10 -11.19 By element: Atomic # 1 Polarization: -16.00 SS G_CDS: 1.14 Total: -14.86 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 3.73 Total: 5.85 kcal Atomic # 7 Polarization: -4.09 SS G_CDS: -2.41 Total: -6.50 kcal Atomic # 8 Polarization: -2.63 SS G_CDS: -1.93 Total: -4.55 kcal Atomic # 14 Polarization: 9.39 SS G_CDS: 1.46 Total: 10.85 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.21 Total: -1.34 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.64 kcal Total: -11.28 0.10 -11.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725486133.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.078 kcal (2) G-P(sol) polarization free energy of solvation -11.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds