Wall clock time and date at job start Mon Mar 23 2020 11:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 H 1.00896 * 109.47185 * 2 1 4 4 C 1.46906 * 109.46817 * 240.00555 * 2 1 3 5 5 C 1.53001 * 109.46696 * 167.55801 * 4 2 1 6 6 C 1.54993 * 113.24364 * 68.74292 * 5 4 2 7 7 C 1.58689 * 103.90712 * 147.20449 * 6 5 4 8 8 N 1.48072 * 105.87971 * 0.35553 * 7 6 5 9 9 H 1.00899 * 111.52072 * 211.66711 * 8 7 6 10 10 C 1.48648 * 106.31967 * 333.45500 * 8 7 6 11 11 C 1.47422 * 108.26288 * 88.59835 * 8 7 6 12 12 C 1.52938 * 109.67298 * 312.39161 * 11 8 7 13 13 C 1.53207 * 110.01937 * 304.40594 * 12 11 8 14 14 C 1.46900 * 109.47310 * 120.00619 * 2 1 3 15 15 C 1.52997 * 109.46882 * 291.61032 * 14 2 1 16 16 C 1.53001 * 109.57453 * 310.11038 * 15 14 2 17 17 O 1.42899 * 109.47341 * 295.61671 * 16 15 14 18 18 Si 1.86298 * 109.47107 * 175.61391 * 16 15 14 19 19 H 1.48494 * 109.47213 * 60.00219 * 18 16 15 20 20 H 1.48504 * 109.47300 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46941 * 300.00214 * 18 16 15 22 22 C 1.53202 * 109.52196 * 70.29006 * 15 14 2 23 23 C 1.53173 * 109.04205 * 62.91618 * 22 15 14 24 24 C 1.53100 * 109.16123 * 56.98667 * 23 22 15 25 25 O 1.42905 * 109.41103 * 302.38753 * 24 23 22 26 26 C 1.42895 * 114.09870 * 61.16035 * 25 24 23 27 27 H 1.08993 * 109.46712 * 336.31314 * 1 2 3 28 28 H 1.09003 * 109.47253 * 96.31439 * 1 2 3 29 29 H 1.09003 * 109.46825 * 216.31198 * 1 2 3 30 30 H 1.08996 * 109.46900 * 287.55614 * 4 2 1 31 31 H 1.08999 * 109.47127 * 47.56000 * 4 2 1 32 32 H 1.09008 * 110.37703 * 265.43547 * 6 5 4 33 33 H 1.08995 * 110.38007 * 27.78803 * 6 5 4 34 34 H 1.09002 * 110.20362 * 241.44268 * 7 6 5 35 35 H 1.09009 * 110.73887 * 119.54394 * 7 6 5 36 36 H 1.08997 * 111.62228 * 283.59350 * 10 8 7 37 37 H 1.09004 * 110.08271 * 159.97080 * 10 8 7 38 38 H 1.09005 * 109.43905 * 192.32804 * 11 8 7 39 39 H 1.09006 * 109.40885 * 72.43612 * 11 8 7 40 40 H 1.08999 * 109.38000 * 184.23031 * 12 11 8 41 41 H 1.09003 * 109.28596 * 64.51035 * 12 11 8 42 42 H 1.09006 * 109.70876 * 294.16765 * 13 12 11 43 43 H 1.09005 * 109.74340 * 173.56929 * 13 12 11 44 44 H 1.08996 * 109.46836 * 171.60542 * 14 2 1 45 45 H 1.08998 * 109.46607 * 51.61208 * 14 2 1 46 46 H 1.08998 * 109.46800 * 55.61526 * 16 15 14 47 47 H 0.96699 * 113.99697 * 304.75942 * 17 16 15 48 48 H 1.09007 * 109.53757 * 303.05455 * 22 15 14 49 49 H 1.08995 * 109.61377 * 182.83795 * 22 15 14 50 50 H 1.08999 * 109.52665 * 297.07721 * 23 22 15 51 51 H 1.09006 * 109.57422 * 176.91808 * 23 22 15 52 52 H 1.08997 * 109.47786 * 182.40493 * 24 23 22 53 53 H 1.08994 * 109.48121 * 62.37204 * 24 23 22 54 54 H 1.09000 * 109.48282 * 58.82291 * 26 25 24 55 55 H 1.09001 * 109.48283 * 178.84631 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 1 1.8054 0.9513 0.0000 4 6 1.9587 -0.6924 -1.1996 5 6 3.4567 -0.4289 -1.3647 6 6 4.3214 -1.1088 -0.2728 7 6 5.6710 -1.4704 -1.0253 8 7 5.5002 -0.9916 -2.4160 9 1 6.0019 -1.5719 -3.0714 10 6 4.0383 -1.0025 -2.6850 11 6 5.9501 0.4108 -2.4802 12 6 5.3380 1.2014 -1.3230 13 6 3.8117 1.0704 -1.3477 14 6 1.9588 -0.6926 1.1993 15 6 1.6279 0.1397 2.4397 16 6 2.0840 1.5842 2.2244 17 8 3.5071 1.6208 2.0993 18 14 1.5615 2.6239 3.6792 19 1 2.1811 2.0887 4.9181 20 1 2.0037 4.0260 3.4700 21 1 0.0826 2.5859 3.8091 22 6 0.1163 0.1112 2.6871 23 6 -0.3154 -1.3293 2.9782 24 6 0.4791 -1.8599 4.1745 25 8 1.8772 -1.7769 3.8907 26 6 2.3471 -0.4478 3.6568 27 1 -0.3632 0.9411 0.4128 28 1 -0.3634 -0.1130 -1.0214 29 1 -0.3633 -0.8281 0.6086 30 1 1.7875 -1.7639 -1.0959 31 1 1.4259 -0.3224 -2.0756 32 1 4.5183 -0.4133 0.5432 33 1 3.8249 -2.0039 0.1018 34 1 5.8280 -2.5491 -1.0191 35 1 6.5190 -0.9681 -0.5597 36 1 3.6705 -2.0127 -2.8644 37 1 3.8078 -0.3492 -3.5266 38 1 5.6345 0.8500 -3.4267 39 1 7.0373 0.4461 -2.4087 40 1 5.6125 2.2520 -1.4176 41 1 5.7192 0.8115 -0.3792 42 1 3.4158 1.5522 -2.2417 43 1 3.3875 1.5386 -0.4594 44 1 3.0384 -0.8243 1.1274 45 1 1.4782 -1.6678 1.2773 46 1 1.6292 1.9770 1.3150 47 1 3.9776 1.2189 2.8424 48 1 -0.4049 0.4762 1.8020 49 1 -0.1269 0.7443 3.5403 50 1 -0.1190 -1.9519 2.1054 51 1 -1.3804 -1.3518 3.2094 52 1 0.2068 -2.8990 4.3596 53 1 0.2510 -1.2616 5.0566 54 1 2.1435 0.1691 4.5321 55 1 3.4206 -0.4695 3.4692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691465474.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:50 Heat of formation + Delta-G solvation = 160.663969 kcal Electronic energy + Delta-G solvation = -31941.453624 eV Core-core repulsion = 28296.825304 eV Total energy + Delta-G solvation = -3644.628320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.248 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -44.25279 -42.84500 -40.24424 -38.15351 -36.04147 -34.80938 -33.64050 -33.02907 -31.31098 -29.62342 -28.49675 -27.74343 -26.79800 -26.16085 -25.13043 -24.53048 -23.23862 -22.78826 -20.82461 -20.73401 -20.17479 -19.03557 -18.65593 -17.83374 -17.81644 -17.32046 -17.15291 -16.95563 -16.58521 -16.40767 -16.08418 -15.64860 -15.54502 -15.35321 -15.10557 -14.82540 -14.62051 -14.52608 -14.32084 -14.09124 -14.02421 -13.81875 -13.70706 -13.55622 -13.46660 -13.14544 -12.90285 -12.68292 -12.44627 -12.41562 -12.35333 -12.31607 -12.21538 -11.99655 -11.71010 -11.68739 -11.64683 -11.57092 -11.37561 -10.67272 -10.52807 0.70165 0.95851 1.00285 1.23479 1.31659 1.90740 2.35275 2.47065 2.54559 2.72128 2.74862 2.82499 2.97069 3.01951 3.14183 3.18097 3.25748 3.40777 3.42623 3.49474 3.53736 3.57774 3.65173 3.79445 3.88710 3.92037 3.93333 4.01618 4.10147 4.12427 4.18062 4.21244 4.25155 4.29604 4.35130 4.39036 4.44116 4.49975 4.54134 4.55459 4.56929 4.59245 4.62103 4.64919 4.68557 4.74864 4.81121 4.81336 4.88259 4.94964 4.98752 4.99308 5.11702 5.18507 5.24134 6.03232 6.34095 Molecular weight = 314.25amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.005963 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.389707 B = 4694.470461 C = 5083.654259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.379 5.379 3 H 0.426 0.574 4 C 0.012 3.988 5 C -0.097 4.097 6 C -0.163 4.163 7 C -0.008 4.008 8 N -0.378 5.378 9 H 0.450 0.550 10 C 0.014 3.986 11 C -0.004 4.004 12 C -0.148 4.148 13 C -0.143 4.143 14 C -0.009 4.009 15 C -0.129 4.129 16 C -0.065 4.065 17 O -0.531 6.531 18 Si 0.904 3.096 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.263 1.263 22 C -0.179 4.179 23 C -0.152 4.152 24 C 0.040 3.960 25 O -0.378 6.378 26 C 0.042 3.958 27 H 0.132 0.868 28 H 0.154 0.846 29 H 0.128 0.872 30 H 0.167 0.833 31 H 0.171 0.829 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.172 0.828 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.398 0.602 48 H 0.138 0.862 49 H 0.057 0.943 50 H 0.113 0.887 51 H 0.078 0.922 52 H 0.094 0.906 53 H 0.030 0.970 54 H 0.041 0.959 55 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 -6.338 -21.314 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 N 0.039 4.961 3 H 0.268 0.732 4 C -0.109 4.109 5 C -0.098 4.098 6 C -0.200 4.200 7 C -0.130 4.130 8 N 0.041 4.959 9 H 0.290 0.710 10 C -0.108 4.108 11 C -0.126 4.126 12 C -0.185 4.185 13 C -0.181 4.181 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.182 4.182 17 O -0.340 6.340 18 Si 0.737 3.263 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.188 1.188 22 C -0.215 4.215 23 C -0.189 4.189 24 C -0.037 4.037 25 O -0.296 6.296 26 C -0.035 4.035 27 H 0.150 0.850 28 H 0.172 0.828 29 H 0.146 0.854 30 H 0.185 0.815 31 H 0.188 0.812 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.180 0.820 37 H 0.169 0.831 38 H 0.153 0.847 39 H 0.142 0.858 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.189 0.811 45 H 0.174 0.826 46 H 0.173 0.827 47 H 0.250 0.750 48 H 0.155 0.845 49 H 0.075 0.925 50 H 0.131 0.869 51 H 0.097 0.903 52 H 0.113 0.887 53 H 0.048 0.952 54 H 0.059 0.941 55 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.249 -5.803 -21.006 22.416 hybrid contribution 0.309 0.624 1.486 1.641 sum 5.558 -5.179 -19.520 20.946 Atomic orbital electron populations 1.24979 0.75670 1.10034 1.11651 1.45414 1.16327 1.19749 1.14567 0.73222 1.23949 0.93769 1.04921 0.88243 1.22441 0.94271 0.97321 0.95730 1.24403 0.92958 1.04379 0.98258 1.25267 1.02496 1.06004 0.79217 1.45970 1.16644 1.16081 1.17176 0.70977 1.24903 0.76472 1.09938 0.99447 1.23898 1.04673 0.79294 1.04781 1.22028 0.95696 1.02306 0.98497 1.22372 0.96240 0.93492 1.05970 1.24576 1.08731 0.98795 0.80860 1.21977 0.97907 0.95683 0.97428 1.25369 0.86974 0.97108 1.08750 1.86437 1.14005 1.84195 1.49364 0.86261 0.80310 0.79649 0.80094 1.20238 1.22006 1.18789 1.22882 0.93802 0.98300 1.06511 1.22259 1.01035 0.95977 0.99627 1.22783 0.81101 1.02529 0.97261 1.88020 1.24077 1.26613 1.90903 1.23004 1.00932 0.84510 0.95047 0.85018 0.82839 0.85352 0.81496 0.81163 0.86162 0.85477 0.84059 0.85300 0.81992 0.83059 0.84709 0.85830 0.89543 0.88383 0.87950 0.88909 0.81130 0.82607 0.82693 0.75019 0.84459 0.92458 0.86911 0.90336 0.88742 0.95192 0.94114 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 7.33 7.95 127.69 1.02 8.35 16 2 N -0.38 35.01 0.39 -922.44 -0.36 34.64 16 3 H 0.43 -39.53 3.37 -89.70 -0.30 -39.83 16 4 C 0.01 -1.18 4.27 86.30 0.37 -0.81 16 5 C -0.10 9.14 0.86 -50.36 -0.04 9.10 16 6 C -0.16 15.02 3.66 33.32 0.12 15.14 16 7 C -0.01 0.73 6.28 88.12 0.55 1.28 16 8 N -0.38 35.33 1.07 -870.07 -0.93 34.40 16 9 H 0.45 -42.90 8.80 -89.69 -0.79 -43.69 16 10 C 0.01 -1.37 5.86 86.74 0.51 -0.86 16 11 C 0.00 0.37 5.61 86.18 0.48 0.86 16 12 C -0.15 12.32 5.53 30.64 0.17 12.48 16 13 C -0.14 12.72 4.68 31.03 0.15 12.87 16 14 C -0.01 0.74 2.87 86.30 0.25 0.99 16 15 C -0.13 9.38 0.14 -52.08 -0.01 9.37 16 16 C -0.07 4.67 1.66 71.98 0.12 4.79 16 17 O -0.53 39.00 11.86 -148.98 -1.77 37.24 16 18 Si 0.90 -46.75 24.55 68.60 1.68 -45.07 16 19 H -0.28 12.49 6.35 99.48 0.63 13.12 16 20 H -0.29 12.38 7.11 99.48 0.71 13.09 16 21 H -0.26 12.54 6.31 99.48 0.63 13.17 16 22 C -0.18 12.02 3.72 30.72 0.11 12.13 16 23 C -0.15 9.59 5.25 30.69 0.16 9.75 16 24 C 0.04 -2.13 6.84 72.02 0.49 -1.64 16 25 O -0.38 21.13 10.38 -148.98 -1.55 19.59 16 26 C 0.04 -2.67 4.71 72.01 0.34 -2.34 16 27 H 0.13 -11.48 6.43 -2.39 -0.02 -11.49 16 28 H 0.15 -14.13 7.33 -2.39 -0.02 -14.15 16 29 H 0.13 -11.04 4.52 -2.39 -0.01 -11.05 16 30 H 0.17 -16.69 8.00 -2.39 -0.02 -16.71 16 31 H 0.17 -17.06 7.63 -2.39 -0.02 -17.08 16 32 H 0.12 -10.94 5.86 -2.38 -0.01 -10.96 16 33 H 0.13 -11.90 7.05 -2.39 -0.02 -11.92 16 34 H 0.14 -12.74 8.14 -2.39 -0.02 -12.76 16 35 H 0.13 -11.28 6.91 -2.38 -0.02 -11.30 16 36 H 0.16 -15.90 8.14 -2.39 -0.02 -15.92 16 37 H 0.15 -14.50 7.56 -2.38 -0.02 -14.51 16 38 H 0.13 -11.70 7.79 -2.38 -0.02 -11.72 16 39 H 0.12 -10.35 8.14 -2.38 -0.02 -10.37 16 40 H 0.09 -6.53 8.14 -2.39 -0.02 -6.55 16 41 H 0.10 -8.18 5.33 -2.39 -0.01 -8.20 16 42 H 0.10 -9.01 8.06 -2.38 -0.02 -9.03 16 43 H 0.09 -8.16 5.62 -2.38 -0.01 -8.17 16 44 H 0.17 -15.42 3.14 -2.39 -0.01 -15.43 16 45 H 0.16 -13.44 5.71 -2.39 -0.01 -13.46 16 46 H 0.16 -12.57 5.95 -2.39 -0.01 -12.58 16 47 H 0.40 -29.70 6.83 -74.06 -0.51 -30.20 16 48 H 0.14 -10.44 3.53 -2.38 -0.01 -10.45 16 49 H 0.06 -3.30 5.20 -2.39 -0.01 -3.31 16 50 H 0.11 -8.08 5.27 -2.39 -0.01 -8.09 16 51 H 0.08 -4.58 8.14 -2.38 -0.02 -4.60 16 52 H 0.09 -4.79 8.14 -2.39 -0.02 -4.81 16 53 H 0.03 -1.40 8.14 -2.39 -0.02 -1.42 16 54 H 0.04 -2.24 5.66 -2.39 -0.01 -2.25 16 55 H 0.14 -9.78 6.76 -2.39 -0.02 -9.80 16 Total: 2.00 -191.98 343.20 1.80 -190.18 By element: Atomic # 1 Polarization: -362.37 SS G_CDS: -0.07 Total: -362.45 kcal Atomic # 6 Polarization: 86.68 SS G_CDS: 4.79 Total: 91.47 kcal Atomic # 7 Polarization: 70.33 SS G_CDS: -1.29 Total: 69.04 kcal Atomic # 8 Polarization: 60.14 SS G_CDS: -3.31 Total: 56.82 kcal Atomic # 14 Polarization: -46.75 SS G_CDS: 1.68 Total: -45.07 kcal Total: -191.98 1.80 -190.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691465474.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 350.842 kcal (2) G-P(sol) polarization free energy of solvation -191.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -190.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds