Wall clock time and date at job start Mon Mar 23 2020 11:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 H 1.00896 * 109.47304 * 2 1 4 4 C 1.46900 * 109.46881 * 119.99808 * 2 1 3 5 5 C 1.53007 * 109.47226 * 297.52835 * 4 2 1 6 6 C 1.54994 * 113.24192 * 65.45986 * 5 4 2 7 7 C 1.54031 * 104.77921 * 147.50071 * 6 5 4 8 8 N 1.48069 * 106.82964 * 0.33514 * 7 6 5 9 9 H 1.00902 * 111.52520 * 212.31723 * 8 7 6 10 10 C 1.50913 * 105.81057 * 333.67472 * 8 7 6 11 11 C 1.47533 * 109.86909 * 87.76100 * 8 7 6 12 12 C 1.52936 * 108.93807 * 315.08053 * 11 8 7 13 13 C 1.53203 * 109.93195 * 302.84450 * 12 11 8 14 14 C 1.46899 * 109.46921 * 239.99632 * 2 1 3 15 15 C 1.53002 * 109.46885 * 84.95681 * 14 2 1 16 16 C 1.52992 * 109.52292 * 299.62915 * 15 14 2 17 17 O 1.42896 * 109.47444 * 303.48718 * 16 15 14 18 18 Si 1.86301 * 109.47013 * 183.48566 * 16 15 14 19 19 H 1.48496 * 109.47141 * 60.00219 * 18 16 15 20 20 H 1.48507 * 109.47335 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47482 * 300.00012 * 18 16 15 22 22 C 1.53179 * 109.52147 * 59.82037 * 15 14 2 23 23 C 1.53180 * 109.03656 * 62.92318 * 22 15 14 24 24 C 1.53091 * 109.16201 * 56.97918 * 23 22 15 25 25 O 1.42902 * 109.41786 * 302.38787 * 24 23 22 26 26 C 1.42912 * 114.09364 * 61.16248 * 25 24 23 27 27 H 1.08992 * 109.47431 * 196.92060 * 1 2 3 28 28 H 1.09004 * 109.46740 * 316.92136 * 1 2 3 29 29 H 1.09003 * 109.46920 * 76.91720 * 1 2 3 30 30 H 1.09004 * 109.47299 * 177.52834 * 4 2 1 31 31 H 1.09007 * 109.47274 * 57.52825 * 4 2 1 32 32 H 1.09000 * 110.37827 * 266.32753 * 6 5 4 33 33 H 1.09003 * 110.37740 * 28.56014 * 6 5 4 34 34 H 1.08995 * 109.99165 * 119.68254 * 7 6 5 35 35 H 1.09005 * 109.98592 * 240.99235 * 7 6 5 36 36 H 1.08994 * 110.80414 * 283.75092 * 10 8 7 37 37 H 1.09005 * 111.87214 * 159.41593 * 10 8 7 38 38 H 1.08993 * 111.02742 * 194.49048 * 11 8 7 39 39 H 1.08997 * 108.56333 * 74.18498 * 11 8 7 40 40 H 1.09003 * 109.37938 * 182.73597 * 12 11 8 41 41 H 1.09004 * 109.38360 * 62.95826 * 12 11 8 42 42 H 1.09002 * 109.71669 * 173.60546 * 13 12 11 43 43 H 1.09004 * 109.71085 * 294.23969 * 13 12 11 44 44 H 1.08997 * 109.47197 * 204.95619 * 14 2 1 45 45 H 1.09002 * 109.47106 * 324.95851 * 14 2 1 46 46 H 1.09003 * 109.46866 * 63.48798 * 16 15 14 47 47 H 0.96701 * 114.00370 * 179.97438 * 17 16 15 48 48 H 1.09002 * 109.54130 * 182.78671 * 22 15 14 49 49 H 1.08995 * 109.54255 * 303.05828 * 22 15 14 50 50 H 1.08999 * 109.52207 * 297.07641 * 23 22 15 51 51 H 1.08996 * 109.57347 * 176.91269 * 23 22 15 52 52 H 1.09007 * 109.48123 * 182.41002 * 24 23 22 53 53 H 1.09004 * 109.48261 * 62.37352 * 24 23 22 54 54 H 1.09000 * 109.47985 * 178.86106 * 26 25 24 55 55 H 1.08997 * 109.49051 * 58.82420 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8054 0.9512 0.0000 4 6 1.9586 -0.6925 1.1995 5 6 1.5000 0.0639 2.4480 6 6 -0.0382 0.0553 2.6377 7 6 -0.2460 0.0586 4.1639 8 7 1.1005 0.0766 4.7798 9 1 1.1130 -0.4218 5.6570 10 6 2.0232 -0.5603 3.7696 11 6 1.5627 1.4692 4.9339 12 6 1.2689 2.2354 3.6433 13 6 1.9441 1.5393 2.4573 14 6 1.9586 -0.6926 -1.1994 15 6 2.0091 0.2903 -2.3709 16 6 0.6050 0.8335 -2.6433 17 8 -0.2878 -0.2550 -2.8879 18 14 0.6491 1.9479 -4.1356 19 1 1.1191 1.1776 -5.3149 20 1 -0.7137 2.4758 -4.3997 21 1 1.5769 3.0792 -3.8815 22 6 2.9499 1.4490 -2.0268 23 6 4.3671 0.9011 -1.8322 24 6 4.7978 0.1599 -3.1007 25 8 3.8638 -0.8847 -3.3809 26 6 2.5309 -0.4273 -3.6186 27 1 -0.3634 -0.9831 0.2991 28 1 -0.3633 0.7507 0.7019 29 1 -0.3633 0.2326 -1.0010 30 1 3.0478 -0.7310 1.1777 31 1 1.5595 -1.7066 1.2220 32 1 -0.4805 0.9466 2.1925 33 1 -0.4701 -0.8428 2.1960 34 1 -0.8040 0.9460 4.4621 35 1 -0.7831 -0.8396 4.4687 36 1 1.9008 -1.6433 3.7624 37 1 3.0644 -0.2875 3.9421 38 1 2.6320 1.5055 5.1419 39 1 1.0174 1.9265 5.7594 40 1 1.6513 3.2523 3.7314 41 1 0.1918 2.2671 3.4787 42 1 1.6410 2.0204 1.5274 43 1 3.0272 1.5965 2.5655 44 1 2.9582 -1.0841 -1.0103 45 1 1.2865 -1.5151 -1.4438 46 1 0.2600 1.3990 -1.7776 47 1 -1.1984 0.0160 -3.0682 48 1 2.9480 2.1742 -2.8406 49 1 2.6154 1.9296 -1.1075 50 1 4.3787 0.2132 -0.9868 51 1 5.0542 1.7252 -1.6409 52 1 5.7889 -0.2689 -2.9523 53 1 4.8249 0.8575 -3.9378 54 1 1.8889 -1.2791 -3.8432 55 1 2.5282 0.2626 -4.4624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691465474.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:55 Heat of formation + Delta-G solvation = 153.303295 kcal Electronic energy + Delta-G solvation = -31210.449307 eV Core-core repulsion = 27565.501804 eV Total energy + Delta-G solvation = -3644.947503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.248 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.15962 -42.74653 -40.24831 -38.15798 -35.92292 -34.84155 -33.68628 -32.91341 -31.76939 -29.45977 -28.47472 -27.14958 -26.98998 -26.42125 -25.18573 -24.27612 -23.08420 -22.60989 -20.99598 -20.74415 -19.73281 -19.26403 -18.53593 -17.96084 -17.82390 -17.47054 -17.33414 -16.81117 -16.54309 -16.25447 -16.03021 -15.88092 -15.57098 -15.19866 -15.00873 -14.86667 -14.72654 -14.47510 -14.29255 -14.09899 -13.82901 -13.74127 -13.66959 -13.44156 -13.37373 -13.13678 -13.02293 -12.72028 -12.56408 -12.45067 -12.29920 -12.22716 -12.07819 -11.90802 -11.88800 -11.75485 -11.63363 -11.58448 -11.29853 -10.72314 -10.46622 0.71965 0.95815 0.98894 1.25078 1.30720 1.91579 2.32445 2.51772 2.59196 2.75948 2.79238 2.85483 2.95284 2.97408 3.17943 3.29008 3.30638 3.37125 3.47031 3.52419 3.60785 3.66612 3.75782 3.78947 3.84613 3.88858 3.90669 4.05303 4.09943 4.16583 4.18290 4.20302 4.25244 4.32645 4.36527 4.44159 4.47649 4.52385 4.54941 4.55596 4.57539 4.62536 4.66940 4.70078 4.73768 4.77460 4.80401 4.89730 4.90380 4.91105 4.99537 5.01982 5.08619 5.17321 5.20152 6.07713 6.55607 Molecular weight = 314.25amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.004903 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.340334 B = 5709.396432 C = 6208.797941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.375 5.375 3 H 0.423 0.577 4 C 0.012 3.988 5 C -0.091 4.091 6 C -0.161 4.161 7 C -0.006 4.006 8 N -0.385 5.385 9 H 0.448 0.552 10 C 0.017 3.983 11 C -0.003 4.003 12 C -0.153 4.153 13 C -0.144 4.144 14 C 0.024 3.976 15 C -0.093 4.093 16 C -0.076 4.076 17 O -0.543 6.543 18 Si 0.892 3.108 19 H -0.298 1.298 20 H -0.276 1.276 21 H -0.258 1.258 22 C -0.147 4.147 23 C -0.148 4.148 24 C 0.033 3.967 25 O -0.388 6.388 26 C 0.051 3.949 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.151 0.849 45 H 0.154 0.846 46 H 0.143 0.857 47 H 0.410 0.590 48 H 0.065 0.935 49 H 0.129 0.871 50 H 0.117 0.883 51 H 0.090 0.910 52 H 0.097 0.903 53 H 0.029 0.971 54 H 0.114 0.886 55 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.800 -2.503 26.172 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 N 0.045 4.955 3 H 0.264 0.736 4 C -0.109 4.109 5 C -0.092 4.092 6 C -0.198 4.198 7 C -0.128 4.128 8 N 0.034 4.966 9 H 0.288 0.712 10 C -0.105 4.105 11 C -0.125 4.125 12 C -0.190 4.190 13 C -0.181 4.181 14 C -0.098 4.098 15 C -0.094 4.094 16 C -0.191 4.191 17 O -0.354 6.354 18 Si 0.725 3.275 19 H -0.225 1.225 20 H -0.201 1.201 21 H -0.182 1.182 22 C -0.184 4.184 23 C -0.185 4.185 24 C -0.044 4.044 25 O -0.307 6.307 26 C -0.026 4.026 27 H 0.165 0.835 28 H 0.169 0.831 29 H 0.147 0.853 30 H 0.178 0.822 31 H 0.183 0.817 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.175 0.825 37 H 0.172 0.828 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.169 0.831 45 H 0.172 0.828 46 H 0.160 0.840 47 H 0.263 0.737 48 H 0.083 0.917 49 H 0.147 0.853 50 H 0.135 0.865 51 H 0.108 0.892 52 H 0.115 0.885 53 H 0.047 0.953 54 H 0.132 0.868 55 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.327 -2.575 25.383 25.878 hybrid contribution -0.319 1.205 -0.811 1.488 sum -4.646 -1.369 24.572 25.045 Atomic orbital electron populations 1.25628 0.75738 1.11977 1.11837 1.45274 1.16875 1.19321 1.14024 0.73602 1.23841 1.06960 1.00215 0.79903 1.22387 0.96310 0.96438 0.94108 1.23824 0.93969 1.08347 0.93628 1.24397 0.82330 1.10074 0.95983 1.46491 1.15187 1.16011 1.18912 0.71204 1.25307 0.97251 1.03305 0.84616 1.23874 1.06499 0.79697 1.02461 1.22109 1.03923 1.00781 0.92201 1.22401 1.03757 0.91960 0.99974 1.23724 1.07960 0.96575 0.81533 1.21298 0.93769 0.97099 0.97211 1.25399 0.92026 0.95493 1.06226 1.86410 1.24768 1.31247 1.92973 0.86525 0.80326 0.79403 0.81242 1.22472 1.20139 1.18204 1.22164 0.94709 0.96376 1.05184 1.22243 0.96284 1.01759 0.98255 1.22890 0.93501 0.90407 0.97584 1.88050 1.18275 1.33255 1.91146 1.22859 0.84067 1.00731 0.94938 0.83471 0.83060 0.85282 0.82214 0.81672 0.86065 0.85268 0.85509 0.84155 0.82520 0.82791 0.84328 0.86357 0.89281 0.88394 0.88657 0.87773 0.83088 0.82827 0.84011 0.73685 0.91654 0.85335 0.86486 0.89162 0.88487 0.95288 0.86779 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 10.29 6.81 127.69 0.87 11.16 16 2 N -0.37 34.77 0.37 -922.42 -0.34 34.43 16 3 H 0.42 -40.12 3.84 -89.70 -0.34 -40.47 16 4 C 0.01 -1.18 4.18 86.31 0.36 -0.82 16 5 C -0.09 8.83 0.80 -50.36 -0.04 8.79 16 6 C -0.16 15.32 3.51 31.62 0.11 15.43 16 7 C -0.01 0.59 6.11 86.43 0.53 1.11 16 8 N -0.39 36.41 1.11 -873.52 -0.97 35.44 16 9 H 0.45 -42.98 8.82 -89.69 -0.79 -43.77 16 10 C 0.02 -1.60 5.94 86.28 0.51 -1.09 16 11 C 0.00 0.27 5.73 86.16 0.49 0.77 16 12 C -0.15 13.17 5.53 30.64 0.17 13.34 16 13 C -0.14 13.22 4.73 31.03 0.15 13.37 16 14 C 0.02 -1.93 3.54 86.30 0.31 -1.63 16 15 C -0.09 6.34 0.14 -52.09 -0.01 6.34 16 16 C -0.08 5.18 1.07 71.98 0.08 5.25 16 17 O -0.54 36.64 9.96 -148.98 -1.48 35.16 16 18 Si 0.89 -44.12 24.48 68.60 1.68 -42.44 16 19 H -0.30 11.42 6.32 99.48 0.63 12.05 16 20 H -0.28 12.06 7.11 99.48 0.71 12.76 16 21 H -0.26 12.06 6.34 99.48 0.63 12.69 16 22 C -0.15 10.06 4.26 30.71 0.13 10.19 16 23 C -0.15 9.59 5.77 30.68 0.18 9.76 16 24 C 0.03 -1.67 6.84 72.01 0.49 -1.18 16 25 O -0.39 18.98 10.18 -148.98 -1.52 17.46 16 26 C 0.05 -2.74 4.89 72.01 0.35 -2.39 16 27 H 0.15 -13.87 6.67 -2.39 -0.02 -13.89 16 28 H 0.15 -14.66 4.75 -2.39 -0.01 -14.68 16 29 H 0.13 -11.17 2.86 -2.39 -0.01 -11.18 16 30 H 0.16 -15.81 7.93 -2.39 -0.02 -15.82 16 31 H 0.17 -16.45 7.96 -2.38 -0.02 -16.47 16 32 H 0.12 -11.60 4.97 -2.39 -0.01 -11.62 16 33 H 0.13 -12.52 6.46 -2.39 -0.02 -12.54 16 34 H 0.13 -11.33 6.89 -2.39 -0.02 -11.35 16 35 H 0.14 -12.86 8.14 -2.38 -0.02 -12.88 16 36 H 0.16 -15.40 8.14 -2.39 -0.02 -15.42 16 37 H 0.15 -14.86 7.62 -2.38 -0.02 -14.87 16 38 H 0.14 -12.21 7.81 -2.39 -0.02 -12.23 16 39 H 0.12 -10.03 8.14 -2.39 -0.02 -10.05 16 40 H 0.09 -7.02 8.14 -2.39 -0.02 -7.04 16 41 H 0.10 -8.51 5.28 -2.38 -0.01 -8.52 16 42 H 0.10 -8.94 6.56 -2.39 -0.02 -8.95 16 43 H 0.10 -9.44 8.06 -2.39 -0.02 -9.46 16 44 H 0.15 -12.38 5.66 -2.39 -0.01 -12.39 16 45 H 0.15 -12.37 7.25 -2.39 -0.02 -12.39 16 46 H 0.14 -11.48 5.64 -2.39 -0.01 -11.50 16 47 H 0.41 -29.01 8.74 -74.06 -0.65 -29.66 16 48 H 0.06 -3.85 5.59 -2.39 -0.01 -3.86 16 49 H 0.13 -10.47 6.09 -2.39 -0.01 -10.48 16 50 H 0.12 -8.69 6.63 -2.39 -0.02 -8.71 16 51 H 0.09 -5.62 8.14 -2.39 -0.02 -5.64 16 52 H 0.10 -4.78 8.14 -2.38 -0.02 -4.80 16 53 H 0.03 -1.30 8.14 -2.39 -0.02 -1.32 16 54 H 0.11 -6.01 7.86 -2.39 -0.02 -6.03 16 55 H 0.03 -1.55 5.26 -2.39 -0.01 -1.56 16 Total: 2.00 -195.35 347.90 1.78 -193.56 By element: Atomic # 1 Polarization: -361.77 SS G_CDS: -0.27 Total: -362.04 kcal Atomic # 6 Polarization: 83.74 SS G_CDS: 4.68 Total: 88.42 kcal Atomic # 7 Polarization: 71.18 SS G_CDS: -1.30 Total: 69.88 kcal Atomic # 8 Polarization: 55.62 SS G_CDS: -3.00 Total: 52.62 kcal Atomic # 14 Polarization: -44.12 SS G_CDS: 1.68 Total: -42.44 kcal Total: -195.35 1.78 -193.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691465474.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 346.867 kcal (2) G-P(sol) polarization free energy of solvation -195.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -193.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds