Wall clock time and date at job start Mon Mar 23 2020 11:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 H 1.00901 * 109.47075 * 2 1 4 4 C 1.46900 * 109.46831 * 240.00283 * 2 1 3 5 5 C 1.53004 * 109.47133 * 86.10876 * 4 2 1 6 6 C 1.52998 * 109.54464 * 304.76145 * 5 4 2 7 7 O 1.42904 * 109.47310 * 305.19134 * 6 5 4 8 8 Si 1.86296 * 109.47426 * 185.19209 * 6 5 4 9 9 H 1.48493 * 109.47455 * 179.97438 * 8 6 5 10 10 H 1.48502 * 109.47070 * 59.99690 * 8 6 5 11 11 H 1.48502 * 109.47127 * 300.00423 * 8 6 5 12 12 C 1.53174 * 109.61827 * 64.98562 * 5 4 2 13 13 C 1.53098 * 109.16254 * 62.93065 * 12 5 4 14 14 O 1.42896 * 109.41646 * 57.60822 * 13 12 5 15 15 C 1.42911 * 114.09949 * 298.84525 * 14 13 12 16 16 C 1.53086 * 109.41435 * 61.15493 * 15 14 13 17 17 C 1.47991 * 109.47347 * 120.00093 * 2 1 3 18 18 H 1.09036 * 107.05623 * 59.99970 * 17 2 1 19 19 C 1.52318 * 108.41997 * 301.10338 * 17 2 1 20 20 C 1.52321 * 112.57966 * 195.23246 * 19 17 2 21 21 H 1.10063 * 108.71117 * 171.14331 * 20 19 17 22 22 C 1.52374 * 111.55414 * 290.96625 * 20 19 17 23 23 C 1.52184 * 112.53559 * 69.23456 * 22 20 19 24 24 C 1.52231 * 112.69328 * 44.83157 * 23 22 20 25 25 N 1.45850 * 112.47613 * 313.56649 * 24 23 22 26 26 C 1.46502 * 111.96338 * 57.76855 * 25 24 23 27 27 C 1.45736 * 114.02849 * 289.17413 * 25 24 23 28 28 H 1.09007 * 109.46826 * 293.53677 * 1 2 3 29 29 H 1.08996 * 109.47355 * 53.53690 * 1 2 3 30 30 H 1.08996 * 109.46874 * 173.54151 * 1 2 3 31 31 H 1.09006 * 109.47150 * 326.10886 * 4 2 1 32 32 H 1.08994 * 109.47300 * 206.10845 * 4 2 1 33 33 H 1.09005 * 109.47172 * 65.18901 * 6 5 4 34 34 H 0.96697 * 113.99887 * 300.00507 * 7 6 5 35 35 H 1.08999 * 109.52250 * 182.83270 * 12 5 4 36 36 H 1.09002 * 109.52390 * 303.02651 * 12 5 4 37 37 H 1.09006 * 109.47567 * 297.62956 * 13 12 5 38 38 H 1.09000 * 109.49137 * 177.60104 * 13 12 5 39 39 H 1.09002 * 109.47585 * 301.17417 * 15 14 13 40 40 H 1.09003 * 109.49076 * 181.15164 * 15 14 13 41 41 H 1.09008 * 109.52210 * 182.48959 * 16 15 14 42 42 H 1.09003 * 109.57421 * 62.33387 * 16 15 14 43 43 H 1.09691 * 109.18195 * 316.66398 * 19 17 2 44 44 H 1.09712 * 109.09712 * 73.92921 * 19 17 2 45 45 H 1.09722 * 109.08773 * 190.54788 * 22 20 19 46 46 H 1.09669 * 109.15801 * 307.75494 * 22 20 19 47 47 H 1.10570 * 108.02020 * 163.97370 * 23 22 20 48 48 H 1.08718 * 110.84477 * 279.99536 * 23 22 20 49 49 H 1.09647 * 109.14137 * 192.12887 * 24 23 22 50 50 H 1.09674 * 109.07587 * 74.86235 * 24 23 22 51 51 H 1.08856 * 109.94408 * 54.54289 * 26 25 24 52 52 H 1.08882 * 109.91949 * 175.63200 * 26 25 24 53 53 H 1.09678 * 109.27136 * 309.55315 * 27 25 24 54 54 H 1.09671 * 109.27820 * 192.14351 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 1 1.8054 0.9513 0.0000 4 6 1.9587 -0.6924 -1.1995 5 6 2.0363 0.2973 -2.3637 6 6 0.6723 0.9608 -2.5633 7 8 -0.3271 -0.0463 -2.7340 8 14 0.7250 2.0460 -4.0767 9 1 -0.5991 2.6895 -4.2708 10 1 1.0526 1.2203 -5.2667 11 1 1.7634 3.0926 -3.8994 12 6 3.0876 1.3687 -2.0587 13 6 4.4618 0.7046 -1.9386 14 8 4.7590 0.0056 -3.1490 15 6 3.8359 -1.0398 -3.4608 16 6 2.4366 -0.4458 -3.6421 17 6 1.9624 -0.6976 1.2083 18 1 1.5776 -1.7171 1.1685 19 6 1.4190 0.0226 2.4355 20 6 2.1467 -0.3707 3.7145 21 1 1.8180 0.2952 4.5269 22 6 1.8436 -1.8105 4.1109 23 6 2.4586 -2.8209 3.1534 24 6 3.8999 -2.4878 2.7943 25 7 4.0773 -1.0828 2.4456 26 6 3.6555 -0.1918 3.5293 27 6 3.4855 -0.7093 1.1673 28 1 -0.3633 0.4104 0.9422 29 1 -0.3634 0.6107 -0.8264 30 1 -0.3633 -1.0211 -0.1156 31 1 1.2754 -1.5022 -1.4559 32 1 2.9497 -1.1016 -1.0037 33 1 0.4317 1.5669 -1.6898 34 1 -0.1769 -0.6244 -3.4945 35 1 3.1063 2.1010 -2.8658 36 1 2.8399 1.8654 -1.1205 37 1 4.4543 0.0017 -1.1054 38 1 5.2204 1.4675 -1.7637 39 1 3.8202 -1.7654 -2.6476 40 1 4.1434 -1.5336 -4.3826 41 1 1.7232 -1.2468 -3.8363 42 1 2.4410 0.2496 -4.4814 43 1 1.5101 1.1057 2.2875 44 1 0.3518 -0.2077 2.5437 45 1 2.2277 -1.9926 5.1224 46 1 0.7568 -1.9545 4.1398 47 1 2.4508 -3.8097 3.6482 48 1 1.8514 -2.9242 2.2575 49 1 4.2136 -3.1126 1.9496 50 1 4.5471 -2.7325 3.6453 51 1 4.1730 -0.4560 4.4499 52 1 3.8732 0.8419 3.2657 53 1 3.8164 -1.4147 0.3953 54 1 3.8433 0.2867 0.8798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717446129.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:16 Heat of formation + Delta-G solvation = 38.644079 kcal Electronic energy + Delta-G solvation = -31248.672783 eV Core-core repulsion = 27612.409022 eV Total energy + Delta-G solvation = -3636.263761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.240 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.78782 -41.36840 -39.74902 -38.15176 -35.32177 -34.49343 -33.45721 -32.30522 -31.51017 -29.74847 -28.45372 -27.20397 -26.61071 -25.01379 -24.55194 -23.95807 -23.17067 -22.90406 -20.87771 -19.73529 -19.06382 -18.25869 -17.90540 -17.42436 -17.24299 -17.06930 -16.99687 -16.23402 -16.01080 -15.93883 -15.71306 -15.60844 -15.39427 -15.15753 -15.00268 -14.74869 -14.58064 -14.19860 -14.10803 -13.65152 -13.46607 -13.42569 -13.22745 -13.02357 -12.98447 -12.88161 -12.68327 -12.57608 -12.34766 -12.22047 -12.15076 -11.94020 -11.89761 -11.79504 -11.57642 -11.35574 -11.17673 -11.13152 -10.74625 -10.34358 -9.17813 0.72581 1.07296 1.33978 1.42490 1.94849 2.54467 2.63310 2.78803 2.92363 2.97174 3.08281 3.15873 3.21679 3.32883 3.53308 3.55556 3.63183 3.67878 3.76152 3.83380 3.86382 3.91653 3.95816 4.01929 4.11066 4.15120 4.17274 4.23938 4.33877 4.35222 4.38363 4.40593 4.43743 4.45319 4.53984 4.56519 4.63910 4.65982 4.71074 4.72130 4.82303 4.87802 4.95131 4.96747 4.98829 5.03346 5.06130 5.11148 5.12472 5.17423 5.19701 5.30311 6.01838 6.18336 6.28623 6.52727 Molecular weight = 313.24amu Principal moments of inertia in cm(-1) A = 0.018139 B = 0.005616 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.260325 B = 4984.655647 C = 5700.023133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.373 5.373 3 H 0.424 0.576 4 C -0.001 4.001 5 C -0.094 4.094 6 C -0.087 4.087 7 O -0.535 6.535 8 Si 0.925 3.075 9 H -0.295 1.295 10 H -0.268 1.268 11 H -0.266 1.266 12 C -0.177 4.177 13 C 0.046 3.954 14 O -0.411 6.411 15 C 0.050 3.950 16 C -0.166 4.166 17 C 0.013 3.987 18 H 0.147 0.853 19 C -0.132 4.132 20 C -0.111 4.111 21 H 0.083 0.917 22 C -0.119 4.119 23 C -0.153 4.153 24 C 0.058 3.942 25 N -0.542 5.542 26 C 0.056 3.944 27 C 0.034 3.966 28 H 0.129 0.871 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.166 0.834 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.396 0.604 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.042 0.958 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.056 0.944 51 H 0.062 0.938 52 H 0.095 0.905 53 H 0.108 0.892 54 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.593 -1.098 3.122 6.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 N 0.047 4.953 3 H 0.263 0.737 4 C -0.122 4.122 5 C -0.095 4.095 6 C -0.202 4.202 7 O -0.344 6.344 8 Si 0.757 3.243 9 H -0.221 1.221 10 H -0.193 1.193 11 H -0.191 1.191 12 C -0.215 4.215 13 C -0.030 4.030 14 O -0.331 6.331 15 C -0.026 4.026 16 C -0.204 4.204 17 C -0.091 4.091 18 H 0.164 0.836 19 C -0.169 4.169 20 C -0.132 4.132 21 H 0.101 0.899 22 C -0.157 4.157 23 C -0.192 4.192 24 C -0.070 4.070 25 N -0.262 5.262 26 C -0.071 4.071 27 C -0.094 4.094 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.150 0.850 31 H 0.183 0.817 32 H 0.156 0.844 33 H 0.173 0.827 34 H 0.248 0.752 35 H 0.096 0.904 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.138 0.862 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.105 0.895 50 H 0.075 0.925 51 H 0.080 0.920 52 H 0.114 0.886 53 H 0.126 0.874 54 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.247 -0.453 2.722 5.929 hybrid contribution -0.394 -0.165 -0.181 0.464 sum -5.641 -0.618 2.541 6.218 Atomic orbital electron populations 1.24813 0.74947 1.11372 1.10209 1.45781 1.16942 1.18885 1.13643 0.73720 1.24159 1.07631 0.98006 0.82417 1.21417 0.95856 0.96203 0.96038 1.25790 0.88622 0.96669 1.09125 1.86485 1.47707 1.46293 1.53945 0.85982 0.78505 0.79786 0.79998 1.22135 1.19257 1.19082 1.22658 0.94915 0.98317 1.05577 1.22912 0.96414 0.96556 0.87118 1.88085 1.51852 1.49871 1.43249 1.22777 0.87994 0.89313 1.02557 1.22523 0.99236 1.02307 0.96329 1.24271 0.99511 1.01075 0.84216 0.83552 1.21873 1.01954 1.02039 0.91081 1.21389 0.96820 0.96751 0.98222 0.89884 1.21380 1.01311 0.94213 0.98767 1.22002 0.97241 0.99241 1.00682 1.21857 0.95082 0.87876 1.02146 1.60025 1.59589 1.03566 1.03000 1.22129 0.93099 0.97650 0.94225 1.22703 0.88134 1.05570 0.93025 0.85301 0.84091 0.84991 0.81660 0.84369 0.82679 0.75167 0.90449 0.86265 0.90009 0.88858 0.89874 0.89580 0.86200 0.91367 0.87616 0.87746 0.93891 0.91079 0.92891 0.89425 0.89456 0.92542 0.91957 0.88624 0.87440 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 4.29 7.69 127.69 0.98 5.27 16 2 N -0.37 22.37 0.21 -896.74 -0.19 22.18 16 3 H 0.42 -26.72 5.47 -89.69 -0.49 -27.21 16 4 C 0.00 0.04 3.13 86.30 0.27 0.31 16 5 C -0.09 4.61 0.11 -52.06 -0.01 4.60 16 6 C -0.09 4.10 1.08 71.98 0.08 4.18 16 7 O -0.54 25.45 10.15 -148.98 -1.51 23.94 16 8 Si 0.93 -29.73 24.47 68.60 1.68 -28.05 16 9 H -0.29 6.95 7.11 99.48 0.71 7.65 16 10 H -0.27 7.41 6.31 99.48 0.63 8.04 16 11 H -0.27 7.51 6.36 99.48 0.63 8.15 16 12 C -0.18 8.03 4.47 30.69 0.14 8.17 16 13 C 0.05 -1.83 6.57 72.01 0.47 -1.36 16 14 O -0.41 12.41 10.77 -148.98 -1.60 10.81 16 15 C 0.05 -1.85 6.57 72.01 0.47 -1.38 16 16 C -0.17 7.00 4.11 30.68 0.13 7.12 16 17 C 0.01 -0.72 1.22 44.27 0.05 -0.67 16 18 H 0.15 -8.17 5.61 -2.37 -0.01 -8.18 16 19 C -0.13 6.66 3.86 30.14 0.12 6.78 16 20 C -0.11 4.47 2.91 -11.21 -0.03 4.43 16 21 H 0.08 -3.10 8.23 -1.82 -0.01 -3.11 16 22 C -0.12 4.21 5.38 30.12 0.16 4.37 16 23 C -0.15 5.60 5.13 30.07 0.15 5.75 16 24 C 0.06 -2.04 5.76 86.25 0.50 -1.54 16 25 N -0.54 20.76 4.78 -902.39 -4.31 16.44 16 26 C 0.06 -2.07 5.69 86.40 0.49 -1.58 16 27 C 0.03 -1.68 3.73 86.31 0.32 -1.36 16 28 H 0.13 -7.70 6.02 -2.38 -0.01 -7.72 16 29 H 0.14 -8.03 3.47 -2.39 -0.01 -8.04 16 30 H 0.13 -7.80 7.81 -2.39 -0.02 -7.82 16 31 H 0.17 -9.97 7.16 -2.38 -0.02 -9.99 16 32 H 0.14 -7.88 2.42 -2.39 -0.01 -7.89 16 33 H 0.16 -8.45 5.44 -2.38 -0.01 -8.47 16 34 H 0.40 -19.76 7.28 -74.06 -0.54 -20.30 16 35 H 0.08 -2.93 5.68 -2.39 -0.01 -2.95 16 36 H 0.12 -6.50 6.31 -2.39 -0.02 -6.52 16 37 H 0.08 -3.82 4.50 -2.38 -0.01 -3.83 16 38 H 0.09 -3.40 8.14 -2.39 -0.02 -3.42 16 39 H 0.08 -3.63 6.71 -2.39 -0.02 -3.64 16 40 H 0.09 -2.82 8.14 -2.39 -0.02 -2.84 16 41 H 0.12 -5.70 7.05 -2.38 -0.02 -5.72 16 42 H 0.07 -2.39 5.15 -2.39 -0.01 -2.40 16 43 H 0.11 -5.71 8.05 -2.02 -0.02 -5.72 16 44 H 0.10 -5.42 6.90 -2.01 -0.01 -5.43 16 45 H 0.04 -1.23 8.20 -2.00 -0.02 -1.24 16 46 H 0.07 -2.53 8.20 -2.03 -0.02 -2.55 16 47 H 0.05 -1.65 8.27 -1.54 -0.01 -1.67 16 48 H 0.09 -3.74 5.72 -2.54 -0.01 -3.75 16 49 H 0.09 -3.17 8.10 -2.04 -0.02 -3.19 16 50 H 0.06 -1.61 8.20 -2.03 -0.02 -1.63 16 51 H 0.06 -1.88 8.13 -2.46 -0.02 -1.90 16 52 H 0.10 -3.71 8.13 -2.45 -0.02 -3.73 16 53 H 0.11 -5.46 5.93 -2.03 -0.01 -5.48 16 54 H 0.11 -5.63 7.31 -2.03 -0.01 -5.65 16 Total: 1.00 -68.58 339.31 -1.12 -69.71 By element: Atomic # 1 Polarization: -158.65 SS G_CDS: 0.52 Total: -158.13 kcal Atomic # 6 Polarization: 38.81 SS G_CDS: 4.30 Total: 43.11 kcal Atomic # 7 Polarization: 43.13 SS G_CDS: -4.50 Total: 38.63 kcal Atomic # 8 Polarization: 37.86 SS G_CDS: -3.12 Total: 34.75 kcal Atomic # 14 Polarization: -29.73 SS G_CDS: 1.68 Total: -28.05 kcal Total: -68.58 -1.12 -69.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717446129.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.352 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds