Wall clock time and date at job start Mon Mar 23 2020 11:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 H 1.00904 * 109.46596 * 2 1 4 4 C 1.46899 * 109.47194 * 120.00007 * 2 1 3 5 5 C 1.52993 * 109.47348 * 264.60147 * 4 2 1 6 6 C 1.53003 * 109.54692 * 304.93606 * 5 4 2 7 7 O 1.42903 * 109.46569 * 299.81890 * 6 5 4 8 8 Si 1.86300 * 109.47213 * 179.82062 * 6 5 4 9 9 H 1.48500 * 109.47049 * 59.99630 * 8 6 5 10 10 H 1.48502 * 109.46965 * 299.99748 * 8 6 5 11 11 H 1.48493 * 109.47117 * 179.97438 * 8 6 5 12 12 C 1.53180 * 109.61296 * 65.15614 * 5 4 2 13 13 C 1.53089 * 109.16438 * 62.93165 * 12 5 4 14 14 O 1.42903 * 109.41719 * 57.60557 * 13 12 5 15 15 C 1.42898 * 114.09626 * 298.84482 * 14 13 12 16 16 C 1.53083 * 109.41781 * 61.15846 * 15 14 13 17 17 C 1.47950 * 109.47110 * 240.00390 * 2 1 3 18 18 H 1.09000 * 107.17937 * 298.99807 * 17 2 1 19 19 C 1.52358 * 108.45853 * 179.97438 * 17 2 1 20 20 C 1.52342 * 112.46966 * 194.70656 * 19 17 2 21 21 H 1.10054 * 108.69117 * 171.30269 * 20 19 17 22 22 C 1.52345 * 111.58822 * 291.11518 * 20 19 17 23 23 C 1.52156 * 112.62031 * 69.44190 * 22 20 19 24 24 C 1.52192 * 112.84704 * 44.32067 * 23 22 20 25 25 N 1.45771 * 112.62860 * 314.15058 * 24 23 22 26 26 C 1.46547 * 112.02703 * 57.42238 * 25 24 23 27 27 C 1.45807 * 114.15597 * 288.86674 * 25 24 23 28 28 H 1.09000 * 109.46746 * 310.04999 * 1 2 3 29 29 H 1.09001 * 109.46962 * 70.05261 * 1 2 3 30 30 H 1.09003 * 109.46673 * 190.05384 * 1 2 3 31 31 H 1.09004 * 109.46413 * 144.60172 * 4 2 1 32 32 H 1.08997 * 109.46991 * 24.61059 * 4 2 1 33 33 H 1.08995 * 109.46986 * 59.81854 * 6 5 4 34 34 H 0.96700 * 113.99593 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.52277 * 182.83384 * 12 5 4 36 36 H 1.09003 * 109.52169 * 303.02051 * 12 5 4 37 37 H 1.08999 * 109.47727 * 297.62185 * 13 12 5 38 38 H 1.09004 * 109.47931 * 177.59267 * 13 12 5 39 39 H 1.09000 * 109.48218 * 301.17155 * 15 14 13 40 40 H 1.09005 * 109.48755 * 181.14328 * 15 14 13 41 41 H 1.09000 * 109.52710 * 182.48088 * 16 15 14 42 42 H 1.09002 * 109.57767 * 62.32569 * 16 15 14 43 43 H 1.09659 * 109.16015 * 316.05825 * 19 17 2 44 44 H 1.09671 * 109.13190 * 73.40563 * 19 17 2 45 45 H 1.09732 * 109.11053 * 190.83926 * 22 20 19 46 46 H 1.09712 * 109.13359 * 307.97835 * 22 20 19 47 47 H 1.10615 * 107.97518 * 163.46427 * 23 22 20 48 48 H 1.08746 * 110.84912 * 279.32923 * 23 22 20 49 49 H 1.09697 * 109.08083 * 75.61505 * 24 23 22 50 50 H 1.09698 * 109.08006 * 192.69508 * 24 23 22 51 51 H 1.08822 * 109.93882 * 175.61292 * 26 25 24 52 52 H 1.08859 * 109.90189 * 54.47236 * 26 25 24 53 53 H 1.09571 * 109.40098 * 308.92907 * 27 25 24 54 54 H 1.09708 * 109.15300 * 191.36800 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 1 1.8053 0.9514 0.0000 4 6 1.9587 -0.6925 1.1994 5 6 2.2567 0.3333 2.2947 6 6 3.2308 1.3850 1.7598 7 8 4.4481 0.7493 1.3646 8 14 3.5879 2.6360 3.0933 9 1 4.1921 1.9519 4.2647 10 1 2.3228 3.2965 3.5040 11 1 4.5338 3.6563 2.5743 12 6 0.9552 1.0143 2.7291 13 6 0.0178 -0.0333 3.3352 14 8 0.6686 -0.6740 4.4343 15 6 1.8666 -1.3674 4.0793 16 6 2.8783 -0.3734 3.5032 17 6 1.9622 -0.6974 -1.2081 18 1 1.5936 -1.7221 -1.1613 19 6 3.4856 -0.6833 -1.1851 20 6 4.0916 -1.0493 -2.5340 21 1 5.1766 -0.8693 -2.4936 22 6 3.8529 -2.5143 -2.8768 23 6 2.3918 -2.8145 -3.1771 24 6 1.7475 -1.7717 -4.0791 25 7 2.0554 -0.4074 -3.6680 26 6 3.4989 -0.1579 -3.6282 27 6 1.3965 0.0073 -2.4352 28 1 -0.3633 0.6613 0.7867 29 1 -0.3633 0.3506 -0.9660 30 1 -0.3633 -1.0119 0.1794 31 1 2.8697 -1.2396 0.9565 32 1 1.1990 -1.3901 1.5518 33 1 2.7873 1.8870 0.9000 34 1 5.1135 1.3573 1.0143 35 1 1.1754 1.7799 3.4732 36 1 0.4776 1.4732 1.8634 37 1 -0.2343 -0.7764 2.5787 38 1 -0.8929 0.4528 3.6851 39 1 1.6387 -2.1280 3.3325 40 1 2.2880 -1.8425 4.9653 41 1 3.7761 -0.9069 3.1911 42 1 3.1385 0.3643 4.2624 43 1 3.8319 0.3154 -0.8933 44 1 3.8401 -1.3920 -0.4269 45 1 4.4627 -2.7833 -3.7486 46 1 4.1848 -3.1387 -2.0379 47 1 2.3435 -3.7897 -3.6970 48 1 1.8242 -2.9340 -2.2572 49 1 2.0929 -1.9256 -5.1088 50 1 0.6599 -1.9144 -4.0723 51 1 3.6884 0.8877 -3.3938 52 1 3.9452 -0.4099 -4.5886 53 1 0.3235 -0.2028 -2.5075 54 1 1.5157 1.0907 -2.3102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717446129.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:20 Heat of formation + Delta-G solvation = 35.110129 kcal Electronic energy + Delta-G solvation = -31185.435031 eV Core-core repulsion = 27549.018027 eV Total energy + Delta-G solvation = -3636.417004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.240 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.72508 -41.33060 -39.67355 -38.03518 -35.47570 -34.47895 -33.47084 -32.38758 -31.21504 -30.02294 -28.34869 -27.11975 -26.63715 -24.99497 -24.55140 -23.68830 -23.27084 -22.84961 -20.76155 -19.86152 -18.66533 -18.58015 -17.79355 -17.55546 -17.23213 -17.02225 -16.86793 -16.51394 -16.30761 -15.90115 -15.74116 -15.46083 -15.20419 -15.05468 -14.78118 -14.71241 -14.33989 -14.28698 -14.13598 -13.79182 -13.69370 -13.46954 -13.21826 -13.13693 -13.02539 -12.90226 -12.69477 -12.50223 -12.25622 -12.14538 -12.10048 -11.97919 -11.81013 -11.75539 -11.53816 -11.30678 -11.26593 -11.12762 -10.54144 -10.47105 -9.14335 0.71962 1.03301 1.33745 1.38210 1.92764 2.56095 2.63706 2.81104 2.84619 2.94545 3.03909 3.12293 3.25639 3.40596 3.55765 3.65647 3.69596 3.72182 3.77372 3.87197 3.88840 3.92964 4.01173 4.04927 4.07722 4.11748 4.16472 4.23500 4.29975 4.32189 4.39716 4.41099 4.43770 4.47485 4.53387 4.55893 4.66742 4.71479 4.75895 4.80267 4.81548 4.83592 4.92206 4.98915 5.01182 5.08070 5.09061 5.13027 5.17776 5.19906 5.22219 5.32949 6.05828 6.23762 6.27149 6.61746 Molecular weight = 313.24amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.005567 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.314750 B = 5028.293714 C = 5531.177351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.374 5.374 3 H 0.423 0.577 4 C -0.001 4.001 5 C -0.057 4.057 6 C -0.083 4.083 7 O -0.543 6.543 8 Si 0.926 3.074 9 H -0.288 1.288 10 H -0.261 1.261 11 H -0.277 1.277 12 C -0.185 4.185 13 C 0.046 3.954 14 O -0.412 6.412 15 C 0.050 3.950 16 C -0.153 4.153 17 C 0.012 3.988 18 H 0.144 0.856 19 C -0.130 4.130 20 C -0.108 4.108 21 H 0.081 0.919 22 C -0.119 4.119 23 C -0.152 4.152 24 C 0.060 3.940 25 N -0.544 5.544 26 C 0.057 3.943 27 C 0.041 3.959 28 H 0.135 0.865 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.116 0.884 34 H 0.406 0.594 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.087 0.913 49 H 0.054 0.946 50 H 0.088 0.912 51 H 0.096 0.904 52 H 0.059 0.941 53 H 0.116 0.884 54 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 0.500 -4.256 6.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 N 0.044 4.956 3 H 0.264 0.736 4 C -0.123 4.123 5 C -0.058 4.058 6 C -0.198 4.198 7 O -0.353 6.353 8 Si 0.757 3.243 9 H -0.214 1.214 10 H -0.185 1.185 11 H -0.202 1.202 12 C -0.222 4.222 13 C -0.030 4.030 14 O -0.332 6.332 15 C -0.027 4.027 16 C -0.191 4.191 17 C -0.092 4.092 18 H 0.161 0.839 19 C -0.167 4.167 20 C -0.129 4.129 21 H 0.100 0.900 22 C -0.157 4.157 23 C -0.191 4.191 24 C -0.068 4.068 25 N -0.264 5.264 26 C -0.070 4.070 27 C -0.088 4.088 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.133 0.867 34 H 0.258 0.742 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.078 0.922 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.105 0.895 49 H 0.073 0.927 50 H 0.106 0.894 51 H 0.115 0.885 52 H 0.078 0.922 53 H 0.134 0.866 54 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.250 0.646 -3.591 6.393 hybrid contribution 1.446 0.036 0.367 1.492 sum -3.804 0.682 -3.224 5.033 Atomic orbital electron populations 1.24811 0.75211 1.11081 1.11047 1.45887 1.16678 1.19200 1.13792 0.73568 1.24149 1.07905 0.96958 0.83263 1.20703 0.94985 0.94866 0.95255 1.25398 0.88903 1.00257 1.05289 1.86393 1.25270 1.38390 1.85264 0.86012 0.80436 0.78076 0.79773 1.21429 1.18519 1.20214 1.22904 0.94961 0.99939 1.04382 1.22948 0.95230 0.94712 0.90106 1.88073 1.39463 1.70151 1.35485 1.22789 0.84438 0.93735 1.01700 1.22316 1.00257 1.00059 0.96426 1.24323 0.98571 1.01551 0.84720 0.83892 1.21898 0.90552 1.06444 0.97830 1.21370 1.01638 0.94828 0.95035 0.90033 1.21379 0.96150 0.96464 1.01727 1.21995 0.96137 0.99662 1.01340 1.21814 1.01224 0.85426 0.98357 1.60031 1.11492 1.23421 1.31465 1.22124 0.86211 1.00293 0.98388 1.22617 1.00535 1.01453 0.84187 0.84732 0.84031 0.84480 0.83005 0.83418 0.86714 0.74232 0.90911 0.85322 0.89206 0.88295 0.89824 0.89986 0.87649 0.92218 0.87309 0.88420 0.93996 0.91336 0.93064 0.89495 0.92741 0.89356 0.88548 0.92212 0.86635 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 4.99 7.81 127.69 1.00 5.99 16 2 N -0.37 22.49 0.20 -896.77 -0.18 22.30 16 3 H 0.42 -26.62 5.04 -89.69 -0.45 -27.07 16 4 C 0.00 0.06 3.11 86.30 0.27 0.33 16 5 C -0.06 2.66 0.11 -52.06 -0.01 2.66 16 6 C -0.08 3.87 1.75 71.98 0.13 3.99 16 7 O -0.54 25.12 10.07 -148.98 -1.50 23.62 16 8 Si 0.93 -29.43 24.50 68.60 1.68 -27.75 16 9 H -0.29 6.61 6.30 99.48 0.63 7.24 16 10 H -0.26 7.53 6.30 99.48 0.63 8.15 16 11 H -0.28 7.48 7.11 99.48 0.71 8.18 16 12 C -0.18 8.26 3.94 30.68 0.12 8.38 16 13 C 0.05 -1.85 6.14 72.01 0.44 -1.41 16 14 O -0.41 11.92 10.77 -148.98 -1.60 10.32 16 15 C 0.05 -1.69 6.57 72.01 0.47 -1.22 16 16 C -0.15 5.63 4.32 30.68 0.13 5.76 16 17 C 0.01 -0.67 1.20 44.30 0.05 -0.61 16 18 H 0.14 -7.94 5.59 -2.39 -0.01 -7.95 16 19 C -0.13 6.43 3.84 30.16 0.12 6.54 16 20 C -0.11 4.31 2.91 -11.20 -0.03 4.28 16 21 H 0.08 -3.02 8.23 -1.82 -0.02 -3.03 16 22 C -0.12 4.16 5.37 30.10 0.16 4.32 16 23 C -0.15 5.53 5.11 30.05 0.15 5.69 16 24 C 0.06 -2.09 5.76 86.25 0.50 -1.59 16 25 N -0.54 20.97 4.78 -902.35 -4.31 16.66 16 26 C 0.06 -2.11 5.70 86.39 0.49 -1.62 16 27 C 0.04 -2.04 4.30 86.31 0.37 -1.66 16 28 H 0.13 -8.39 4.76 -2.39 -0.01 -8.40 16 29 H 0.14 -8.92 5.76 -2.39 -0.01 -8.94 16 30 H 0.14 -8.63 7.70 -2.39 -0.02 -8.65 16 31 H 0.15 -8.33 5.10 -2.38 -0.01 -8.34 16 32 H 0.15 -8.46 4.29 -2.39 -0.01 -8.47 16 33 H 0.12 -6.54 5.84 -2.39 -0.01 -6.55 16 34 H 0.41 -20.19 8.74 -74.06 -0.65 -20.84 16 35 H 0.07 -2.68 5.38 -2.39 -0.01 -2.69 16 36 H 0.13 -7.03 5.22 -2.39 -0.01 -7.04 16 37 H 0.09 -4.38 5.66 -2.39 -0.01 -4.39 16 38 H 0.10 -3.76 8.14 -2.39 -0.02 -3.78 16 39 H 0.08 -3.42 6.72 -2.39 -0.02 -3.43 16 40 H 0.08 -2.40 8.14 -2.38 -0.02 -2.42 16 41 H 0.11 -3.99 7.79 -2.39 -0.02 -4.00 16 42 H 0.06 -1.75 5.40 -2.39 -0.01 -1.76 16 43 H 0.11 -5.75 6.69 -2.04 -0.01 -5.76 16 44 H 0.10 -4.82 6.42 -2.03 -0.01 -4.83 16 45 H 0.04 -1.18 8.20 -2.00 -0.02 -1.19 16 46 H 0.07 -2.38 8.20 -2.01 -0.02 -2.39 16 47 H 0.05 -1.57 8.27 -1.52 -0.01 -1.59 16 48 H 0.09 -3.67 5.75 -2.52 -0.01 -3.68 16 49 H 0.05 -1.54 8.20 -2.02 -0.02 -1.56 16 50 H 0.09 -3.22 8.12 -2.01 -0.02 -3.24 16 51 H 0.10 -3.78 8.12 -2.48 -0.02 -3.80 16 52 H 0.06 -1.80 8.13 -2.46 -0.02 -1.82 16 53 H 0.12 -6.08 6.58 -2.08 -0.01 -6.09 16 54 H 0.11 -5.82 8.09 -2.01 -0.02 -5.84 16 Total: 1.00 -69.88 342.27 -1.11 -71.00 By element: Atomic # 1 Polarization: -156.42 SS G_CDS: 0.44 Total: -155.98 kcal Atomic # 6 Polarization: 35.47 SS G_CDS: 4.37 Total: 39.83 kcal Atomic # 7 Polarization: 43.46 SS G_CDS: -4.49 Total: 38.96 kcal Atomic # 8 Polarization: 37.05 SS G_CDS: -3.10 Total: 33.94 kcal Atomic # 14 Polarization: -29.43 SS G_CDS: 1.68 Total: -27.75 kcal Total: -69.88 -1.11 -71.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717446129.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.108 kcal (2) G-P(sol) polarization free energy of solvation -69.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds