Wall clock time and date at job start Mon Mar 23 2020 11:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00363 * 2 1 4 4 C 1.52997 * 109.47263 * 95.09143 * 3 2 1 5 5 C 1.52998 * 109.54226 * 53.27825 * 4 3 2 6 6 O 1.42907 * 109.47157 * 60.00180 * 5 4 3 7 7 Si 1.86300 * 109.47369 * 179.97438 * 5 4 3 8 8 H 1.48498 * 109.46965 * 60.00091 * 7 5 4 9 9 H 1.48504 * 109.47359 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47097 * 300.00262 * 7 5 4 11 11 C 1.53180 * 109.54616 * 293.01462 * 4 3 2 12 12 C 1.53096 * 109.16365 * 297.11233 * 11 4 3 13 13 O 1.42899 * 109.41316 * 302.39137 * 12 11 4 14 14 C 1.42908 * 114.10005 * 61.15538 * 13 12 11 15 15 C 1.53098 * 109.41499 * 298.84356 * 14 13 12 16 16 C 1.48055 * 110.99831 * 236.04809 * 2 1 3 17 17 H 1.09007 * 106.93900 * 171.90439 * 16 2 1 18 18 C 1.52383 * 108.36870 * 53.05462 * 16 2 1 19 19 C 1.52394 * 112.12930 * 195.07882 * 18 16 2 20 20 H 1.10107 * 108.70007 * 171.12662 * 19 18 16 21 21 C 1.52412 * 111.33821 * 290.81185 * 19 18 16 22 22 C 1.52215 * 112.19854 * 69.70523 * 21 19 18 23 23 C 1.51991 * 112.77143 * 44.48936 * 22 21 19 24 24 N 1.45627 * 113.53235 * 313.62886 * 23 22 21 25 25 H 1.02255 * 107.04558 * 172.69067 * 24 23 22 26 26 C 1.46333 * 111.23024 * 56.63535 * 24 23 22 27 27 C 1.45590 * 113.19743 * 290.43073 * 24 23 22 28 28 H 1.09004 * 109.47284 * 164.84323 * 1 2 3 29 29 H 1.08995 * 109.47373 * 44.83691 * 1 2 3 30 30 H 1.09005 * 109.46503 * 284.84048 * 1 2 3 31 31 H 1.09000 * 109.47465 * 215.09620 * 3 2 1 32 32 H 1.09004 * 109.47091 * 335.09653 * 3 2 1 33 33 H 1.09001 * 109.47580 * 300.00407 * 5 4 3 34 34 H 0.96699 * 113.99640 * 59.99957 * 6 5 4 35 35 H 1.09005 * 109.52225 * 57.01812 * 11 4 3 36 36 H 1.08997 * 109.52617 * 177.20382 * 11 4 3 37 37 H 1.08999 * 109.48063 * 182.40520 * 12 11 4 38 38 H 1.09002 * 109.47975 * 62.36792 * 12 11 4 39 39 H 1.08997 * 109.47805 * 178.85944 * 14 13 12 40 40 H 1.09001 * 109.48798 * 58.82902 * 14 13 12 41 41 H 1.09004 * 109.51845 * 297.69878 * 15 14 13 42 42 H 1.08991 * 109.56955 * 177.54593 * 15 14 13 43 43 H 1.09668 * 109.24167 * 316.35417 * 18 16 2 44 44 H 1.09685 * 109.21737 * 73.83378 * 18 16 2 45 45 H 1.09698 * 109.22536 * 308.35460 * 21 19 18 46 46 H 1.09726 * 109.20100 * 191.00506 * 21 19 18 47 47 H 1.08707 * 110.99232 * 279.20211 * 22 21 19 48 48 H 1.10695 * 107.87667 * 163.50256 * 22 21 19 49 49 H 1.09719 * 109.06472 * 191.98238 * 23 22 21 50 50 H 1.09760 * 109.00824 * 75.16360 * 23 22 21 51 51 H 1.08883 * 109.60350 * 56.09714 * 26 24 23 52 52 H 1.08903 * 109.58073 * 176.48600 * 26 24 23 53 53 H 1.09721 * 108.93506 * 307.84681 * 27 24 23 54 54 H 1.09698 * 108.96019 * 191.05863 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 2.2978 1.8016 1.4368 5 6 3.2061 0.7650 2.1011 6 8 4.4286 0.6632 1.3680 7 14 3.5736 1.2911 3.8500 8 1 2.3035 1.3973 4.6122 9 1 4.4557 0.2853 4.4946 10 1 4.2550 2.6106 3.8372 11 6 0.9885 1.9174 2.2233 12 6 0.1204 3.0113 1.5961 13 8 0.8415 4.2450 1.5905 14 6 2.0515 4.2103 0.8307 15 6 2.9971 3.1644 1.4273 16 6 1.9995 -0.7720 -1.1466 17 1 3.0772 -0.6091 -1.1677 18 6 1.3601 -0.2376 -2.4223 19 6 1.5498 -1.1857 -3.6003 20 1 0.9372 -0.8289 -4.4428 21 6 3.0073 -1.2354 -4.0430 22 6 3.8953 -1.9315 -3.0214 23 6 3.2798 -3.2125 -2.4827 24 7 1.8818 -3.0700 -2.1007 25 1 1.5363 -4.0052 -1.8732 26 6 1.0730 -2.5873 -3.2206 27 6 1.6921 -2.2445 -0.9166 28 1 -0.3634 -0.9919 -0.2687 29 1 -0.3634 0.7287 -0.7246 30 1 -0.3632 0.2632 0.9935 31 1 2.9107 1.4092 -0.5908 32 1 1.2555 2.0447 -0.4328 33 1 2.7062 -0.2036 2.1101 34 1 4.9276 1.4901 1.3187 35 1 0.4573 0.9661 2.1885 36 1 1.2075 2.1755 3.2594 37 1 -0.7943 3.1275 2.1774 38 1 -0.1318 2.7331 0.5728 39 1 2.5278 5.1902 0.8607 40 1 1.8246 3.9478 -0.2026 41 1 3.2567 3.4478 2.4473 42 1 3.9029 3.1049 0.8240 43 1 0.2879 -0.0825 -2.2517 44 1 1.8018 0.7361 -2.6671 45 1 3.3713 -0.2130 -4.2029 46 1 3.0753 -1.7643 -5.0020 47 1 4.1610 -1.2562 -2.2120 48 1 4.8464 -2.1961 -3.5221 49 1 3.8547 -3.5471 -1.6102 50 1 3.3608 -3.9967 -3.2464 51 1 1.1900 -3.2570 -4.0712 52 1 0.0255 -2.5499 -2.9250 53 1 2.3369 -2.6214 -0.1128 54 1 0.6540 -2.3430 -0.5759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717446129.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:25 Heat of formation + Delta-G solvation = 32.029664 kcal Electronic energy + Delta-G solvation = -30950.925682 eV Core-core repulsion = 27314.375098 eV Total energy + Delta-G solvation = -3636.550583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 313.240 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.46958 -41.51903 -38.67034 -37.80348 -35.98479 -34.98211 -33.29707 -32.29020 -31.23098 -29.00104 -28.02585 -27.49608 -26.34242 -24.90059 -24.65533 -24.11626 -23.61258 -21.76584 -20.28102 -19.65220 -18.98063 -18.19038 -17.55072 -17.38664 -17.17306 -16.94993 -16.85814 -16.21608 -16.00991 -15.81818 -15.69448 -15.45242 -15.24863 -15.18060 -15.15388 -14.67009 -14.40641 -14.19812 -13.87516 -13.69002 -13.60331 -13.35928 -13.13261 -12.89387 -12.79136 -12.69521 -12.56917 -12.34265 -12.27189 -12.10779 -11.93843 -11.82052 -11.69625 -11.64001 -11.56513 -11.34954 -11.05428 -11.01739 -10.56809 -10.11699 -9.26680 1.00317 1.28715 1.33953 1.42488 1.92119 2.54398 2.92257 2.93824 3.00909 3.21052 3.38177 3.42121 3.46993 3.62805 3.70017 3.74240 3.81172 3.83471 3.87240 3.92536 3.99098 4.01703 4.13936 4.18240 4.19179 4.24749 4.27810 4.31290 4.41632 4.47215 4.49714 4.53860 4.59126 4.64907 4.67281 4.68953 4.73530 4.75555 4.77862 4.82394 4.84755 4.88116 4.95096 5.01321 5.05162 5.10091 5.13705 5.14653 5.20780 5.21682 5.35558 5.40404 5.94178 6.04833 6.25194 6.70000 Molecular weight = 313.24amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.005405 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.355512 B = 5179.201959 C = 5712.303057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.525 5.525 3 C 0.081 3.919 4 C -0.071 4.071 5 C -0.044 4.044 6 O -0.542 6.542 7 Si 0.910 3.090 8 H -0.269 1.269 9 H -0.286 1.286 10 H -0.273 1.273 11 C -0.162 4.162 12 C 0.056 3.944 13 O -0.414 6.414 14 C 0.058 3.942 15 C -0.171 4.171 16 C 0.071 3.929 17 H 0.106 0.894 18 C -0.158 4.158 19 C -0.096 4.096 20 H 0.096 0.904 21 C -0.126 4.126 22 C -0.145 4.145 23 C -0.001 4.001 24 N -0.348 5.348 25 H 0.453 0.547 26 C 0.005 3.995 27 C -0.003 4.003 28 H 0.096 0.904 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.144 0.856 34 H 0.380 0.620 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.143 0.857 50 H 0.146 0.854 51 H 0.148 0.852 52 H 0.145 0.855 53 H 0.148 0.852 54 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 -18.077 -12.961 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 N -0.247 5.247 3 C -0.047 4.047 4 C -0.072 4.072 5 C -0.159 4.159 6 O -0.348 6.348 7 Si 0.742 3.258 8 H -0.194 1.194 9 H -0.212 1.212 10 H -0.198 1.198 11 C -0.199 4.199 12 C -0.020 4.020 13 O -0.333 6.333 14 C -0.018 4.018 15 C -0.209 4.209 16 C -0.037 4.037 17 H 0.123 0.877 18 C -0.197 4.197 19 C -0.116 4.116 20 H 0.114 0.886 21 C -0.163 4.163 22 C -0.183 4.183 23 C -0.122 4.122 24 N 0.072 4.928 25 H 0.293 0.707 26 C -0.117 4.117 27 C -0.125 4.125 28 H 0.115 0.885 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.162 0.838 34 H 0.228 0.772 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.161 0.839 50 H 0.164 0.836 51 H 0.166 0.834 52 H 0.163 0.837 53 H 0.166 0.834 54 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.038 -18.187 -11.671 21.706 hybrid contribution 0.053 1.591 -0.571 1.692 sum -1.985 -16.596 -12.242 20.718 Atomic orbital electron populations 1.22977 0.86998 1.02938 1.02258 1.62317 1.08006 1.13522 1.40903 1.22051 1.00265 0.88554 0.93854 1.21009 0.95055 0.93788 0.97397 1.25429 0.86272 1.04344 0.99867 1.86417 1.33748 1.38944 1.75721 0.86452 0.79655 0.78902 0.80817 1.19382 1.21200 1.19815 1.22534 0.96802 1.01283 0.99309 1.22745 0.94580 0.83695 1.01003 1.87973 1.36944 1.34993 1.73424 1.22643 0.84605 0.99984 0.94583 1.22533 1.00342 0.95319 1.02670 1.22070 1.01677 0.91824 0.88135 0.87659 1.22320 1.02988 0.99716 0.94694 1.21163 0.97291 0.94070 0.99034 0.88593 1.21472 0.93707 1.01890 0.99267 1.21648 1.00049 0.96309 1.00268 1.23354 0.79876 1.01255 1.07760 1.44488 1.14910 1.19587 1.13852 0.70654 1.23656 0.98456 0.98208 0.91395 1.23342 1.10322 0.91906 0.86942 0.88512 0.95038 0.91014 0.89861 0.93441 0.83848 0.77162 0.86896 0.92801 0.89334 0.91489 0.89379 0.91577 0.92161 0.87887 0.89939 0.92434 0.92596 0.90606 0.90191 0.89558 0.83911 0.83574 0.83376 0.83684 0.83383 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.18 7.33 127.69 0.94 1.12 16 2 N -0.52 21.75 3.34 -896.88 -2.99 18.75 16 3 C 0.08 -2.81 2.77 86.30 0.24 -2.57 16 4 C -0.07 2.07 0.18 -52.06 -0.01 2.06 16 5 C -0.04 1.26 1.89 71.98 0.14 1.40 16 6 O -0.54 16.03 12.32 -148.98 -1.83 14.20 16 7 Si 0.91 -16.94 24.50 68.60 1.68 -15.26 16 8 H -0.27 4.07 6.31 99.48 0.63 4.70 16 9 H -0.29 3.86 7.11 99.48 0.71 4.57 16 10 H -0.27 4.06 6.31 99.48 0.63 4.68 16 11 C -0.16 4.14 4.00 30.69 0.12 4.26 16 12 C 0.06 -1.25 6.52 72.01 0.47 -0.78 16 13 O -0.41 6.25 10.77 -148.98 -1.60 4.65 16 14 C 0.06 -1.24 6.57 72.01 0.47 -0.76 16 15 C -0.17 4.24 4.12 30.68 0.13 4.36 16 16 C 0.07 -3.42 1.64 44.22 0.07 -3.35 16 17 H 0.11 -4.79 5.11 -2.38 -0.01 -4.80 16 18 C -0.16 7.26 4.26 30.19 0.13 7.39 16 19 C -0.10 4.76 2.91 -11.24 -0.03 4.73 16 20 H 0.10 -4.40 8.23 -1.79 -0.01 -4.41 16 21 C -0.13 5.75 5.41 30.14 0.16 5.91 16 22 C -0.15 7.16 5.09 30.00 0.15 7.31 16 23 C 0.00 0.04 5.37 86.21 0.46 0.51 16 24 N -0.35 22.07 0.58 -904.72 -0.52 21.54 16 25 H 0.45 -32.20 8.35 -88.59 -0.74 -32.94 16 26 C 0.00 -0.28 5.31 86.36 0.46 0.18 16 27 C 0.00 0.14 4.84 86.28 0.42 0.56 16 28 H 0.10 -4.59 5.89 -2.38 -0.01 -4.61 16 29 H 0.03 -1.20 6.50 -2.39 -0.02 -1.21 16 30 H 0.07 -2.66 5.40 -2.38 -0.01 -2.67 16 31 H 0.08 -2.92 7.13 -2.39 -0.02 -2.94 16 32 H 0.05 -1.55 4.31 -2.39 -0.01 -1.56 16 33 H 0.14 -4.66 7.26 -2.39 -0.02 -4.67 16 34 H 0.38 -12.18 7.08 -74.06 -0.52 -12.71 16 35 H 0.11 -3.42 5.22 -2.38 -0.01 -3.44 16 36 H 0.05 -1.06 5.40 -2.39 -0.01 -1.07 16 37 H 0.09 -1.89 8.14 -2.39 -0.02 -1.91 16 38 H 0.07 -1.78 5.99 -2.39 -0.01 -1.79 16 39 H 0.09 -1.75 8.14 -2.39 -0.02 -1.77 16 40 H 0.07 -1.65 6.76 -2.39 -0.02 -1.67 16 41 H 0.06 -1.18 5.39 -2.39 -0.01 -1.19 16 42 H 0.10 -3.04 6.95 -2.39 -0.02 -3.06 16 43 H 0.08 -3.68 5.80 -2.03 -0.01 -3.70 16 44 H 0.06 -2.24 7.94 -2.02 -0.02 -2.26 16 45 H 0.06 -2.17 8.19 -2.02 -0.02 -2.18 16 46 H 0.08 -3.36 8.20 -2.00 -0.02 -3.37 16 47 H 0.08 -3.70 5.71 -2.54 -0.01 -3.72 16 48 H 0.09 -3.93 8.28 -1.47 -0.01 -3.94 16 49 H 0.14 -8.64 8.09 -2.00 -0.02 -8.65 16 50 H 0.15 -9.02 8.21 -1.98 -0.02 -9.03 16 51 H 0.15 -9.10 8.13 -2.45 -0.02 -9.12 16 52 H 0.15 -8.93 8.13 -2.44 -0.02 -8.95 16 53 H 0.15 -8.64 8.09 -2.00 -0.02 -8.66 16 54 H 0.15 -8.64 5.98 -2.01 -0.01 -8.66 16 Total: 1.00 -69.84 347.40 -0.69 -70.53 By element: Atomic # 1 Polarization: -146.99 SS G_CDS: 0.27 Total: -146.72 kcal Atomic # 6 Polarization: 28.00 SS G_CDS: 4.32 Total: 32.31 kcal Atomic # 7 Polarization: 43.81 SS G_CDS: -3.52 Total: 40.30 kcal Atomic # 8 Polarization: 22.28 SS G_CDS: -3.44 Total: 18.84 kcal Atomic # 14 Polarization: -16.94 SS G_CDS: 1.68 Total: -15.26 kcal Total: -69.84 -0.69 -70.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717446129.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.555 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds