Wall clock time and date at job start Mon Mar 23 2020 11:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47319 * 2 1 4 4 C 1.50697 * 109.47166 * 240.00196 * 2 1 3 5 5 C 1.38243 * 119.99895 * 299.72354 * 4 2 1 6 6 C 1.38231 * 120.00331 * 179.74556 * 5 4 2 7 7 C 1.38238 * 119.99626 * 0.55419 * 6 5 4 8 8 C 1.50695 * 119.99994 * 179.72773 * 7 6 5 9 9 O 1.42897 * 109.47436 * 119.97489 * 8 7 6 10 10 Si 1.86298 * 109.47121 * 359.97438 * 8 7 6 11 11 H 1.48495 * 109.47321 * 60.00296 * 10 8 7 12 12 H 1.48500 * 109.46974 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47252 * 300.00119 * 10 8 7 14 14 C 1.38235 * 120.00239 * 359.70095 * 7 6 5 15 15 C 1.38232 * 120.00467 * 120.00398 * 4 2 1 16 16 C 1.53005 * 109.47284 * 119.99804 * 2 1 3 17 17 H 1.08995 * 109.14736 * 53.47514 * 16 2 1 18 18 C 1.50975 * 109.31131 * 172.99182 * 16 2 1 19 19 C 1.31592 * 117.86846 * 68.61890 * 18 16 2 20 20 C 1.51712 * 116.32972 * 1.19555 * 19 18 16 21 21 H 1.09001 * 109.12870 * 287.43089 * 20 19 18 22 22 C 1.51881 * 109.86148 * 167.50576 * 20 19 18 23 23 C 1.52483 * 111.09508 * 191.68248 * 22 20 19 24 24 C 1.52886 * 109.83656 * 60.96284 * 23 22 20 25 25 C 1.52710 * 109.51229 * 296.07238 * 24 23 22 26 26 C 1.52410 * 110.16909 * 55.27262 * 25 24 23 27 27 C 1.53700 * 117.02874 * 98.20099 * 26 25 24 28 28 N 1.46455 * 58.65069 * 107.58243 * 27 26 25 29 29 H 1.09002 * 109.47297 * 299.99894 * 1 2 3 30 30 H 1.08999 * 109.47155 * 59.99630 * 1 2 3 31 31 H 1.09003 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.08007 * 119.99591 * 0.02562 * 5 4 2 33 33 H 1.07993 * 120.00663 * 180.27557 * 6 5 4 34 34 H 1.09000 * 109.47238 * 239.97356 * 8 7 6 35 35 H 0.96697 * 114.00244 * 300.00303 * 9 8 7 36 36 H 1.07998 * 120.00319 * 180.02562 * 14 7 6 37 37 H 1.08005 * 119.99776 * 359.97438 * 15 4 2 38 38 H 1.07998 * 120.98473 * 248.88762 * 18 16 2 39 39 H 1.08001 * 121.68124 * 180.87578 * 19 18 16 40 40 H 1.08999 * 109.15825 * 71.26272 * 22 20 19 41 41 H 1.09006 * 109.15222 * 312.09316 * 22 20 19 42 42 H 1.08997 * 109.40754 * 300.84513 * 23 22 20 43 43 H 1.09009 * 109.34873 * 181.02985 * 23 22 20 44 44 H 1.09006 * 109.46621 * 176.06568 * 24 23 22 45 45 H 1.08995 * 109.46655 * 56.08457 * 24 23 22 46 46 H 1.08999 * 109.33046 * 175.44265 * 25 24 23 47 47 H 1.08999 * 109.33438 * 295.09923 * 25 24 23 48 48 H 1.09004 * 117.63446 * 214.68677 * 27 26 25 49 49 H 1.09001 * 117.63366 * 0.28671 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.7030 -2.0355 -1.4464 6 6 2.1594 -2.6857 -2.5776 7 6 2.9545 -2.0140 -3.4874 8 6 3.4572 -2.7245 -4.7176 9 8 2.9809 -2.0513 -5.8846 10 14 2.8366 -4.4811 -4.7173 11 1 1.3516 -4.4815 -4.7176 12 1 3.3324 -5.1814 -5.9293 13 1 3.3315 -5.1808 -3.5046 14 6 3.2882 -0.6904 -3.2689 15 6 2.8271 -0.0386 -2.1404 16 6 2.0400 -0.7212 1.2493 17 1 1.5814 -1.7085 1.3044 18 6 3.5397 -0.8714 1.1618 19 6 4.2732 0.2176 1.2499 20 6 3.5226 1.5191 1.4605 21 1 3.0157 1.7928 0.5352 22 6 4.4959 2.6193 1.8467 23 6 3.7563 3.8574 2.3420 24 6 2.9335 3.5085 3.5825 25 6 1.8551 2.4934 3.2103 26 6 2.4875 1.2710 2.5556 27 6 2.7308 0.0461 3.4516 28 7 1.6716 0.0519 2.4401 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.0854 -2.5615 -0.7333 33 1 1.8985 -3.7196 -2.7486 34 1 4.5472 -2.7243 -4.7175 35 1 2.0170 -2.0133 -5.9509 36 1 3.9091 -0.1656 -3.9798 37 1 3.0877 0.9955 -1.9696 38 1 3.9944 -1.8417 1.0267 39 1 5.3504 0.1830 1.1812 40 1 5.0975 2.8859 0.9777 41 1 5.1524 2.2550 2.6369 42 1 3.0926 4.2209 1.5574 43 1 4.4792 4.6335 2.5934 44 1 2.4633 4.4114 3.9722 45 1 3.5868 3.0819 4.3435 46 1 1.3231 2.1858 4.1106 47 1 1.1522 2.9521 2.5149 48 1 3.6163 -0.5578 3.2530 49 1 2.4345 0.1183 4.4981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085547919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:07 Heat of formation + Delta-G solvation = 34.999771 kcal Electronic energy + Delta-G solvation = -27516.103116 eV Core-core repulsion = 24102.927323 eV Total energy + Delta-G solvation = -3413.175793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 313.191 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.04553 -40.64041 -38.11306 -37.37424 -35.83701 -34.52087 -32.10289 -31.36997 -31.01031 -29.95145 -27.14879 -26.74023 -24.38678 -24.03112 -23.59051 -22.89732 -22.51328 -21.23141 -20.02559 -18.80983 -18.54803 -17.33759 -17.15823 -17.00568 -16.80240 -16.20789 -15.83067 -15.62555 -15.33377 -15.13979 -15.06571 -14.75732 -14.46832 -14.44377 -14.18885 -14.06979 -13.77806 -13.52329 -13.29399 -13.11960 -12.96999 -12.77388 -12.54143 -12.40444 -12.32476 -12.22899 -12.08633 -11.99831 -11.76266 -11.63548 -11.47796 -11.43120 -11.12763 -11.02912 -10.43110 -10.02900 -9.87800 -9.69987 -9.55285 0.27967 0.44616 1.03718 1.14426 1.41714 1.49400 1.89557 2.67836 2.74212 2.89002 3.38629 3.45298 3.59286 3.60709 3.66616 3.71226 3.79878 3.90734 3.94823 4.03320 4.08469 4.15837 4.26538 4.28371 4.32986 4.40205 4.42933 4.47824 4.53001 4.56749 4.59183 4.67157 4.70636 4.79572 4.86091 4.86530 4.93128 4.95572 5.01427 5.03720 5.07655 5.10629 5.14314 5.19252 5.19995 5.30424 5.33466 5.42577 5.44708 5.50191 5.55011 5.64675 5.72671 5.80813 6.01485 6.53362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 H 0.090 0.910 4 C -0.061 4.061 5 C -0.109 4.109 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.079 4.079 9 O -0.539 6.539 10 Si 0.949 3.051 11 H -0.252 1.252 12 H -0.255 1.255 13 H -0.252 1.252 14 C -0.086 4.086 15 C -0.112 4.112 16 C 0.086 3.914 17 H 0.094 0.906 18 C -0.182 4.182 19 C -0.144 4.144 20 C -0.041 4.041 21 H 0.094 0.906 22 C -0.106 4.106 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.065 4.065 26 C -0.007 4.007 27 C -0.072 4.072 28 N -0.433 5.433 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.376 0.624 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.107 0.893 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 1.320 1.279 2.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 H 0.108 0.892 4 C -0.062 4.062 5 C -0.127 4.127 6 C -0.140 4.140 7 C -0.125 4.125 8 C -0.190 4.190 9 O -0.344 6.344 10 Si 0.772 3.228 11 H -0.175 1.175 12 H -0.179 1.179 13 H -0.176 1.176 14 C -0.104 4.104 15 C -0.130 4.130 16 C -0.023 4.023 17 H 0.112 0.888 18 C -0.201 4.201 19 C -0.163 4.163 20 C -0.060 4.060 21 H 0.111 0.889 22 C -0.144 4.144 23 C -0.158 4.158 24 C -0.154 4.154 25 C -0.103 4.103 26 C -0.097 4.097 27 C -0.200 4.200 28 N -0.153 5.153 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.223 0.777 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.125 0.875 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.324 0.307 1.192 1.273 hybrid contribution 0.500 0.046 -0.091 0.510 sum 0.824 0.353 1.101 1.420 Atomic orbital electron populations 1.21781 0.93203 1.02310 1.02297 1.20382 0.96751 0.99587 0.90127 0.89177 1.19757 0.96774 0.94029 0.95592 1.20895 1.00186 0.94318 0.97308 1.20995 0.98369 0.99469 0.95129 1.20265 0.99567 0.95562 0.97096 1.24948 1.03744 1.06246 0.84060 1.86509 1.26896 1.79848 1.41135 0.85689 0.80710 0.75329 0.81045 1.17538 1.17874 1.17560 1.20964 0.98888 0.93796 0.96769 1.21060 0.97804 0.99841 0.94332 1.21284 0.91901 0.98559 0.90540 0.88791 1.23467 0.95834 0.99167 1.01640 1.23413 0.99708 0.93820 0.99370 1.20060 0.94498 0.93944 0.97450 0.88902 1.21169 0.97409 0.94414 1.01420 1.21396 0.99180 0.97310 0.97883 1.21421 0.97496 0.98611 0.97881 1.20686 0.97262 0.92424 0.99968 1.22542 0.98309 0.88969 0.99922 1.24721 0.98141 1.00976 0.96184 1.72512 1.30500 1.06004 1.06330 0.91232 0.92607 0.92550 0.85938 0.86408 0.86550 0.77665 0.85561 0.86172 0.86353 0.85796 0.91497 0.91593 0.91904 0.91567 0.91366 0.91661 0.91024 0.91397 0.87510 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.06 8.90 37.15 0.33 0.27 16 2 C -0.05 -0.01 1.98 -91.77 -0.18 -0.19 16 3 H 0.09 0.03 4.31 -51.93 -0.22 -0.19 16 4 C -0.06 -0.03 3.79 -104.62 -0.40 -0.43 16 5 C -0.11 -0.07 8.77 -39.58 -0.35 -0.41 16 6 C -0.12 -0.08 8.67 -39.58 -0.34 -0.43 16 7 C -0.12 -0.08 5.39 -104.63 -0.56 -0.65 16 8 C -0.08 0.01 2.82 36.00 0.10 0.11 16 9 O -0.54 -0.33 12.77 -35.23 -0.45 -0.78 16 10 Si 0.95 -0.20 25.07 -169.99 -4.26 -4.46 16 11 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 12 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 13 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 14 C -0.09 -0.07 9.61 -39.58 -0.38 -0.45 16 15 C -0.11 -0.06 9.67 -39.58 -0.38 -0.44 16 16 C 0.09 0.04 2.25 -68.85 -0.15 -0.11 16 17 H 0.09 0.10 7.59 -51.93 -0.39 -0.30 16 18 C -0.18 -0.01 6.79 -36.03 -0.24 -0.25 16 19 C -0.14 0.08 8.25 -35.67 -0.29 -0.22 16 20 C -0.04 0.03 2.07 -91.99 -0.19 -0.16 16 21 H 0.09 -0.03 5.35 -51.93 -0.28 -0.31 16 22 C -0.11 0.16 5.20 -27.56 -0.14 0.01 16 23 C -0.12 0.19 5.85 -27.05 -0.16 0.03 16 24 C -0.12 0.16 5.93 -26.94 -0.16 0.00 16 25 C -0.07 0.03 5.84 -27.18 -0.16 -0.13 16 26 C -0.01 0.00 2.32 -131.55 -0.31 -0.31 16 27 C -0.07 -0.03 9.61 -3.70 -0.04 -0.07 16 28 N -0.43 -0.54 7.46 -212.32 -1.58 -2.12 16 29 H 0.07 0.09 7.78 -51.93 -0.40 -0.32 16 30 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 31 H 0.06 0.02 7.40 -51.93 -0.38 -0.36 16 32 H 0.12 -0.05 7.18 -52.48 -0.38 -0.42 16 33 H 0.12 -0.04 4.88 -52.49 -0.26 -0.29 16 34 H 0.12 -0.09 7.96 -51.93 -0.41 -0.51 16 35 H 0.38 -0.92 8.70 45.56 0.40 -0.52 16 36 H 0.13 0.03 8.06 -52.49 -0.42 -0.40 16 37 H 0.12 -0.06 7.95 -52.48 -0.42 -0.48 16 38 H 0.12 0.00 8.06 -52.49 -0.42 -0.43 16 39 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 40 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 41 H 0.07 -0.08 8.08 -51.93 -0.42 -0.50 16 42 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 43 H 0.07 -0.12 8.14 -51.92 -0.42 -0.55 16 44 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 45 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 46 H 0.07 -0.01 8.00 -51.93 -0.42 -0.42 16 47 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 48 H 0.11 0.04 5.51 -51.93 -0.29 -0.25 16 49 H 0.11 0.00 8.13 -51.93 -0.42 -0.42 16 LS Contribution 360.32 15.07 5.43 5.43 Total: 0.00 -2.91 360.32 -12.19 -15.11 By element: Atomic # 1 Polarization: -2.05 SS G_CDS: -7.32 Total: -9.37 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -4.01 Total: -3.81 kcal Atomic # 7 Polarization: -0.54 SS G_CDS: -1.58 Total: -2.12 kcal Atomic # 8 Polarization: -0.33 SS G_CDS: -0.45 Total: -0.78 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: -4.26 Total: -4.46 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -2.91 -12.19 -15.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085547919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.106 kcal (2) G-P(sol) polarization free energy of solvation -2.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds