Wall clock time and date at job start Mon Mar 23 2020 11:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47212 * 2 1 4 4 C 1.50706 * 109.47242 * 239.99656 * 2 1 3 5 5 C 1.38240 * 119.99989 * 299.72881 * 4 2 1 6 6 C 1.38229 * 120.00126 * 179.76313 * 5 4 2 7 7 C 1.38238 * 119.99700 * 0.48452 * 6 5 4 8 8 C 1.50702 * 119.99798 * 179.76672 * 7 6 5 9 9 O 1.42902 * 109.46932 * 120.02759 * 8 7 6 10 10 Si 1.86298 * 109.47312 * 0.02562 * 8 7 6 11 11 H 1.48502 * 109.46943 * 59.99725 * 10 8 7 12 12 H 1.48496 * 109.47009 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47040 * 300.00091 * 10 8 7 14 14 C 1.38234 * 120.00218 * 359.79098 * 7 6 5 15 15 C 1.38235 * 120.00013 * 359.95787 * 14 7 6 16 16 C 1.53000 * 109.47315 * 119.99905 * 2 1 3 17 17 H 1.09005 * 109.60318 * 55.18066 * 16 2 1 18 18 C 1.51165 * 109.42242 * 175.60961 * 16 2 1 19 19 C 1.31967 * 119.07640 * 72.61216 * 18 16 2 20 20 C 1.51119 * 117.79096 * 359.82912 * 19 18 16 21 21 H 1.08995 * 108.98601 * 286.93320 * 20 19 18 22 22 C 1.51845 * 110.95471 * 167.47772 * 20 19 18 23 23 C 1.52591 * 110.67244 * 188.68227 * 22 20 19 24 24 C 1.52802 * 110.21945 * 60.82928 * 23 22 20 25 25 C 1.52842 * 109.84692 * 297.02942 * 24 23 22 26 26 C 1.52238 * 109.86485 * 54.89099 * 25 24 23 27 27 C 1.53457 * 117.02390 * 97.77694 * 26 25 24 28 28 N 1.46869 * 58.76650 * 108.92636 * 27 26 25 29 29 H 1.00907 * 117.68666 * 251.27298 * 28 27 26 30 30 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46747 * 300.00137 * 1 2 3 32 32 H 1.09003 * 109.47185 * 60.00266 * 1 2 3 33 33 H 1.08007 * 119.99823 * 0.02562 * 5 4 2 34 34 H 1.07997 * 120.00232 * 180.24916 * 6 5 4 35 35 H 1.09007 * 109.47205 * 240.02025 * 8 7 6 36 36 H 0.96700 * 113.99481 * 299.99514 * 9 8 7 37 37 H 1.08000 * 120.00435 * 179.97438 * 14 7 6 38 38 H 1.07993 * 120.00140 * 180.02562 * 15 14 7 39 39 H 1.07993 * 120.46116 * 252.39562 * 18 16 2 40 40 H 1.07999 * 121.10553 * 180.10796 * 19 18 16 41 41 H 1.08998 * 109.23623 * 308.99423 * 22 20 19 42 42 H 1.08999 * 109.23445 * 68.37614 * 22 20 19 43 43 H 1.09000 * 109.34383 * 300.59985 * 23 22 20 44 44 H 1.09000 * 109.22096 * 180.98462 * 23 22 20 45 45 H 1.09007 * 109.40617 * 176.91467 * 24 23 22 46 46 H 1.09001 * 109.41158 * 57.14950 * 24 23 22 47 47 H 1.08999 * 109.40106 * 294.77518 * 25 24 23 48 48 H 1.08997 * 109.33938 * 174.97241 * 25 24 23 49 49 H 1.09006 * 117.62049 * 216.06534 * 27 26 25 50 50 H 1.09001 * 117.62163 * 1.79090 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 6 1.7030 -2.0356 -1.4463 6 6 2.1598 -2.6859 -2.5773 7 6 2.9541 -2.0140 -3.4876 8 6 3.4564 -2.7245 -4.7180 9 8 2.9801 -2.0508 -5.8848 10 14 2.8353 -4.4809 -4.7180 11 1 1.3503 -4.4808 -4.7179 12 1 3.3308 -5.1811 -5.9301 13 1 3.3302 -5.1809 -3.5055 14 6 3.2881 -0.6906 -3.2689 15 6 2.8271 -0.0388 -2.1404 16 6 2.0400 -0.7212 1.2492 17 1 1.6092 -1.7214 1.2956 18 6 3.5477 -0.8158 1.1947 19 6 4.2662 0.2733 1.3932 20 6 3.5288 1.5646 1.6622 21 1 3.0733 1.9126 0.7351 22 6 4.4781 2.6373 2.1659 23 6 3.7031 3.8643 2.6372 24 6 2.7689 3.4895 3.7868 25 6 1.7291 2.4795 3.3023 26 6 2.4261 1.2773 2.6807 27 6 2.6090 0.0404 3.5704 28 7 1.6534 0.0417 2.4550 29 1 0.6699 0.0557 2.6803 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.0854 -2.5616 -0.7333 34 1 1.8992 -3.7200 -2.7480 35 1 4.5465 -2.7245 -4.7181 36 1 2.0161 -2.0126 -5.9509 37 1 3.9091 -0.1657 -3.9798 38 1 3.0877 0.9953 -1.9698 39 1 4.0302 -1.7620 0.9996 40 1 5.3453 0.2435 1.3599 41 1 5.0609 2.2396 2.9967 42 1 5.1532 2.9264 1.3605 43 1 3.1156 4.2604 1.8089 44 1 4.4066 4.6245 2.9767 45 1 2.2631 4.3846 4.1491 46 1 3.3503 3.0503 4.5975 47 1 1.0864 2.9502 2.5583 48 1 1.1243 2.1506 4.1473 49 1 3.5253 -0.5376 3.4501 50 1 2.2051 0.0813 4.5819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085547919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:15 Heat of formation + Delta-G solvation = 147.257771 kcal Electronic energy + Delta-G solvation = -27813.022366 eV Core-core repulsion = 24391.058706 eV Total energy + Delta-G solvation = -3421.963660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.46673 -42.15163 -40.00618 -39.32509 -38.11760 -36.68444 -33.62270 -33.20985 -33.10511 -32.24414 -29.78072 -28.54982 -27.45046 -26.22769 -25.50885 -25.29266 -24.62619 -22.94827 -22.36495 -21.69262 -20.89541 -20.08603 -19.66901 -19.04440 -18.23559 -18.05679 -17.82719 -17.40217 -17.31339 -17.15218 -17.00150 -16.63471 -16.41127 -16.29419 -16.13687 -16.02351 -15.95371 -15.68375 -15.48490 -15.41586 -15.04047 -14.94721 -14.68731 -14.51093 -14.13262 -13.97176 -13.86762 -13.77053 -13.42052 -13.27725 -13.18587 -13.12614 -13.10979 -12.93822 -12.55928 -12.22073 -11.41227 -11.16638 -10.92178 -1.93322 -1.10723 -0.98704 -0.84254 -0.69638 0.07544 0.25794 0.55019 0.57243 0.63260 0.75278 1.10283 1.15702 1.28262 1.45988 1.55165 1.60998 1.74973 1.92309 2.00728 2.05091 2.14804 2.19708 2.20751 2.26447 2.31928 2.39972 2.50564 2.55030 2.57698 2.60952 2.70159 2.79336 2.79619 2.86558 2.88260 2.97015 3.06217 3.09658 3.18128 3.29914 3.37274 3.38916 3.41907 3.47964 3.52180 3.54126 3.65255 3.68356 3.72341 3.78060 3.78658 4.08672 4.18419 4.35351 4.69659 5.63863 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.023683 B = 0.003736 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.007853 B = 7491.933532 C = 7822.610597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.058 4.058 3 H 0.100 0.900 4 C -0.086 4.086 5 C -0.108 4.108 6 C -0.118 4.118 7 C -0.104 4.104 8 C -0.085 4.085 9 O -0.534 6.534 10 Si 0.946 3.054 11 H -0.251 1.251 12 H -0.247 1.247 13 H -0.251 1.251 14 C -0.082 4.082 15 C -0.103 4.103 16 C 0.095 3.905 17 H 0.141 0.859 18 C -0.184 4.184 19 C -0.115 4.115 20 C -0.050 4.050 21 H 0.117 0.883 22 C -0.109 4.109 23 C -0.131 4.131 24 C -0.115 4.115 25 C -0.103 4.103 26 C 0.064 3.936 27 C 0.000 4.000 28 N -0.456 5.456 29 H 0.438 0.562 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.378 0.622 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.170 0.830 50 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.295 4.354 14.446 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.076 4.076 3 H 0.118 0.882 4 C -0.087 4.087 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.104 4.104 8 C -0.196 4.196 9 O -0.339 6.339 10 Si 0.768 3.232 11 H -0.174 1.174 12 H -0.171 1.171 13 H -0.175 1.175 14 C -0.100 4.100 15 C -0.121 4.121 16 C -0.005 4.005 17 H 0.159 0.841 18 C -0.202 4.202 19 C -0.133 4.133 20 C -0.068 4.068 21 H 0.135 0.865 22 C -0.147 4.147 23 C -0.168 4.168 24 C -0.153 4.153 25 C -0.141 4.141 26 C -0.018 4.018 27 C -0.120 4.120 28 N -0.044 5.044 29 H 0.281 0.719 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.225 0.775 37 H 0.152 0.848 38 H 0.142 0.858 39 H 0.172 0.828 40 H 0.171 0.829 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.116 0.884 48 H 0.111 0.889 49 H 0.187 0.813 50 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.015 3.335 14.091 14.619 hybrid contribution -1.069 0.016 0.041 1.070 sum -3.084 3.351 14.131 14.847 Atomic orbital electron populations 1.22087 0.92128 1.03980 1.03667 1.20566 0.97305 0.99929 0.89829 0.88249 1.19167 0.99912 0.94252 0.95362 1.20825 1.00052 0.93860 0.97868 1.21117 0.97664 1.00111 0.94662 1.20517 0.97684 0.95375 0.96844 1.25034 1.04243 1.06486 0.83839 1.86572 1.27069 1.79527 1.40749 0.85699 0.80679 0.74923 0.81879 1.17439 1.17088 1.17510 1.21111 0.98474 0.93821 0.96632 1.21022 0.97080 0.99743 0.94252 1.22571 0.97206 0.97886 0.82840 0.84116 1.23250 0.90920 1.01694 1.04336 1.23702 1.02025 0.91853 0.95756 1.20263 0.93055 0.96163 0.97307 0.86541 1.21293 0.97040 0.93469 1.02909 1.21521 0.99081 0.97796 0.98432 1.21458 0.96400 0.98599 0.98822 1.21519 0.99107 0.92165 1.01319 1.24535 0.93300 0.85868 0.98125 1.26393 0.95657 0.98490 0.91463 1.47722 1.15240 1.23657 1.17806 0.71901 0.90753 0.92726 0.89638 0.85898 0.85661 0.86022 0.77468 0.84778 0.85806 0.82826 0.82934 0.90174 0.89051 0.90991 0.89618 0.89075 0.90363 0.88386 0.88900 0.81251 0.81231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 3.43 8.85 37.16 0.33 3.76 16 2 C -0.06 1.27 2.08 -91.77 -0.19 1.08 16 3 H 0.10 -2.23 4.92 -51.93 -0.26 -2.49 16 4 C -0.09 1.54 3.89 -104.62 -0.41 1.14 16 5 C -0.11 1.77 8.76 -39.58 -0.35 1.43 16 6 C -0.12 1.61 8.67 -39.58 -0.34 1.27 16 7 C -0.10 1.31 5.39 -104.62 -0.56 0.75 16 8 C -0.09 0.97 2.82 36.01 0.10 1.08 16 9 O -0.53 5.23 12.77 -35.23 -0.45 4.78 16 10 Si 0.95 -10.02 25.07 -169.99 -4.26 -14.28 16 11 H -0.25 2.59 7.11 56.52 0.40 2.99 16 12 H -0.25 1.94 7.11 56.52 0.40 2.34 16 13 H -0.25 2.63 7.11 56.52 0.40 3.04 16 14 C -0.08 1.10 9.61 -39.58 -0.38 0.72 16 15 C -0.10 1.64 9.67 -39.58 -0.38 1.25 16 16 C 0.09 -2.32 2.37 -68.12 -0.16 -2.49 16 17 H 0.14 -3.54 7.56 -51.93 -0.39 -3.94 16 18 C -0.18 4.26 7.14 -35.99 -0.26 4.00 16 19 C -0.11 2.66 8.30 -36.02 -0.30 2.36 16 20 C -0.05 1.18 1.95 -92.24 -0.18 1.00 16 21 H 0.12 -2.73 5.87 -51.93 -0.30 -3.03 16 22 C -0.11 2.38 5.25 -27.53 -0.14 2.24 16 23 C -0.13 2.70 5.83 -27.04 -0.16 2.55 16 24 C -0.11 2.51 5.92 -26.91 -0.16 2.35 16 25 C -0.10 2.55 5.83 -27.20 -0.16 2.39 16 26 C 0.06 -1.65 2.37 -131.53 -0.31 -1.96 16 27 C 0.00 0.00 9.72 -3.60 -0.04 -0.03 16 28 N -0.46 12.49 2.02 -211.04 -0.43 12.06 16 29 H 0.44 -12.86 8.14 -39.29 -0.32 -13.18 16 30 H 0.07 -1.54 7.41 -51.93 -0.38 -1.92 16 31 H 0.05 -1.27 7.12 -51.93 -0.37 -1.64 16 32 H 0.08 -1.59 8.14 -51.93 -0.42 -2.01 16 33 H 0.12 -2.29 7.17 -52.48 -0.38 -2.66 16 34 H 0.13 -1.71 4.88 -52.49 -0.26 -1.96 16 35 H 0.12 -1.45 7.96 -51.93 -0.41 -1.86 16 36 H 0.38 -4.86 8.70 45.56 0.40 -4.46 16 37 H 0.13 -1.72 8.06 -52.49 -0.42 -2.15 16 38 H 0.12 -2.15 7.95 -52.49 -0.42 -2.57 16 39 H 0.15 -3.41 8.06 -52.49 -0.42 -3.83 16 40 H 0.15 -3.43 8.06 -52.49 -0.42 -3.85 16 41 H 0.08 -1.74 8.13 -51.93 -0.42 -2.16 16 42 H 0.09 -1.88 8.14 -51.93 -0.42 -2.31 16 43 H 0.07 -1.44 8.14 -51.93 -0.42 -1.87 16 44 H 0.09 -1.62 8.14 -51.93 -0.42 -2.04 16 45 H 0.09 -1.86 8.14 -51.93 -0.42 -2.28 16 46 H 0.08 -1.70 8.14 -51.93 -0.42 -2.13 16 47 H 0.10 -2.38 8.14 -51.93 -0.42 -2.80 16 48 H 0.09 -2.40 8.00 -51.93 -0.42 -2.82 16 49 H 0.17 -4.57 6.01 -51.93 -0.31 -4.88 16 50 H 0.17 -4.93 8.12 -51.93 -0.42 -5.35 16 LS Contribution 364.72 15.07 5.50 5.50 Total: 1.00 -27.50 364.72 -11.38 -38.88 By element: Atomic # 1 Polarization: -64.12 SS G_CDS: -7.69 Total: -71.81 kcal Atomic # 6 Polarization: 28.92 SS G_CDS: -4.05 Total: 24.87 kcal Atomic # 7 Polarization: 12.49 SS G_CDS: -0.43 Total: 12.06 kcal Atomic # 8 Polarization: 5.23 SS G_CDS: -0.45 Total: 4.78 kcal Atomic # 14 Polarization: -10.02 SS G_CDS: -4.26 Total: -14.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.50 -11.38 -38.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085547919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.140 kcal (2) G-P(sol) polarization free energy of solvation -27.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds