Wall clock time and date at job start Mon Mar 23 2020 11:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47212 * 2 1 4 4 C 1.50706 * 109.47242 * 239.99656 * 2 1 3 5 5 C 1.38240 * 119.99989 * 299.72881 * 4 2 1 6 6 C 1.38229 * 120.00126 * 179.76313 * 5 4 2 7 7 C 1.38238 * 119.99700 * 0.48452 * 6 5 4 8 8 C 1.50702 * 119.99798 * 179.76672 * 7 6 5 9 9 O 1.42902 * 109.46932 * 120.02759 * 8 7 6 10 10 Si 1.86298 * 109.47312 * 0.02562 * 8 7 6 11 11 H 1.48502 * 109.46943 * 59.99725 * 10 8 7 12 12 H 1.48496 * 109.47009 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47040 * 300.00091 * 10 8 7 14 14 C 1.38234 * 120.00218 * 359.79098 * 7 6 5 15 15 C 1.38235 * 120.00013 * 359.95787 * 14 7 6 16 16 C 1.53000 * 109.47315 * 119.99905 * 2 1 3 17 17 H 1.09005 * 109.60318 * 55.18066 * 16 2 1 18 18 C 1.51165 * 109.42242 * 175.60961 * 16 2 1 19 19 C 1.31967 * 119.07640 * 72.61216 * 18 16 2 20 20 C 1.51119 * 117.79096 * 359.82912 * 19 18 16 21 21 H 1.08995 * 108.98601 * 286.93320 * 20 19 18 22 22 C 1.51845 * 110.95471 * 167.47772 * 20 19 18 23 23 C 1.52591 * 110.67244 * 188.68227 * 22 20 19 24 24 C 1.52802 * 110.21945 * 60.82928 * 23 22 20 25 25 C 1.52842 * 109.84692 * 297.02942 * 24 23 22 26 26 C 1.52238 * 109.86485 * 54.89099 * 25 24 23 27 27 C 1.53457 * 117.02390 * 97.77694 * 26 25 24 28 28 N 1.46869 * 58.76650 * 108.92636 * 27 26 25 29 29 H 1.00907 * 117.68666 * 251.27298 * 28 27 26 30 30 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46747 * 300.00137 * 1 2 3 32 32 H 1.09003 * 109.47185 * 60.00266 * 1 2 3 33 33 H 1.08007 * 119.99823 * 0.02562 * 5 4 2 34 34 H 1.07997 * 120.00232 * 180.24916 * 6 5 4 35 35 H 1.09007 * 109.47205 * 240.02025 * 8 7 6 36 36 H 0.96700 * 113.99481 * 299.99514 * 9 8 7 37 37 H 1.08000 * 120.00435 * 179.97438 * 14 7 6 38 38 H 1.07993 * 120.00140 * 180.02562 * 15 14 7 39 39 H 1.07993 * 120.46116 * 252.39562 * 18 16 2 40 40 H 1.07999 * 121.10553 * 180.10796 * 19 18 16 41 41 H 1.08998 * 109.23623 * 308.99423 * 22 20 19 42 42 H 1.08999 * 109.23445 * 68.37614 * 22 20 19 43 43 H 1.09000 * 109.34383 * 300.59985 * 23 22 20 44 44 H 1.09000 * 109.22096 * 180.98462 * 23 22 20 45 45 H 1.09007 * 109.40617 * 176.91467 * 24 23 22 46 46 H 1.09001 * 109.41158 * 57.14950 * 24 23 22 47 47 H 1.08999 * 109.40106 * 294.77518 * 25 24 23 48 48 H 1.08997 * 109.33938 * 174.97241 * 25 24 23 49 49 H 1.09006 * 117.62049 * 216.06534 * 27 26 25 50 50 H 1.09001 * 117.62163 * 1.79090 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 6 1.7030 -2.0356 -1.4463 6 6 2.1598 -2.6859 -2.5773 7 6 2.9541 -2.0140 -3.4876 8 6 3.4564 -2.7245 -4.7180 9 8 2.9801 -2.0508 -5.8848 10 14 2.8353 -4.4809 -4.7180 11 1 1.3503 -4.4808 -4.7179 12 1 3.3308 -5.1811 -5.9301 13 1 3.3302 -5.1809 -3.5055 14 6 3.2881 -0.6906 -3.2689 15 6 2.8271 -0.0388 -2.1404 16 6 2.0400 -0.7212 1.2492 17 1 1.6092 -1.7214 1.2956 18 6 3.5477 -0.8158 1.1947 19 6 4.2662 0.2733 1.3932 20 6 3.5288 1.5646 1.6622 21 1 3.0733 1.9126 0.7351 22 6 4.4781 2.6373 2.1659 23 6 3.7031 3.8643 2.6372 24 6 2.7689 3.4895 3.7868 25 6 1.7291 2.4795 3.3023 26 6 2.4261 1.2773 2.6807 27 6 2.6090 0.0404 3.5704 28 7 1.6534 0.0417 2.4550 29 1 0.6699 0.0557 2.6803 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.0854 -2.5616 -0.7333 34 1 1.8992 -3.7200 -2.7480 35 1 4.5465 -2.7245 -4.7181 36 1 2.0161 -2.0126 -5.9509 37 1 3.9091 -0.1657 -3.9798 38 1 3.0877 0.9953 -1.9698 39 1 4.0302 -1.7620 0.9996 40 1 5.3453 0.2435 1.3599 41 1 5.0609 2.2396 2.9967 42 1 5.1532 2.9264 1.3605 43 1 3.1156 4.2604 1.8089 44 1 4.4066 4.6245 2.9767 45 1 2.2631 4.3846 4.1491 46 1 3.3503 3.0503 4.5975 47 1 1.0864 2.9502 2.5583 48 1 1.1243 2.1506 4.1473 49 1 3.5253 -0.5376 3.4501 50 1 2.2051 0.0813 4.5819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085547919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:14 Heat of formation + Delta-G solvation = 133.576006 kcal Electronic energy + Delta-G solvation = -27813.615652 eV Core-core repulsion = 24391.058706 eV Total energy + Delta-G solvation = -3422.556946 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.45164 -40.85804 -38.40444 -37.88397 -36.66765 -35.01634 -32.27039 -31.75311 -31.34788 -30.60339 -27.82336 -27.10163 -25.76427 -24.47889 -24.02765 -23.47281 -23.21092 -21.53557 -20.54450 -19.72949 -18.99840 -18.66512 -17.99933 -17.49512 -16.99541 -16.47994 -16.30845 -16.06554 -15.83869 -15.54888 -15.36981 -15.16721 -14.83123 -14.75095 -14.61648 -14.40997 -14.30698 -14.14217 -13.84654 -13.57784 -13.50647 -13.22966 -13.16661 -12.76474 -12.58322 -12.54094 -12.29030 -12.24276 -12.07922 -12.01235 -11.87155 -11.63547 -11.49581 -11.40853 -11.32048 -10.50475 -10.36632 -9.96762 -9.70798 0.03675 0.23335 0.35761 0.89769 1.10472 1.35533 1.37703 1.39064 1.86328 2.15529 2.56383 2.61510 2.78382 3.11073 3.29042 3.30149 3.47116 3.51420 3.55442 3.70631 3.78140 3.86841 3.93420 3.97374 3.99422 4.07106 4.08294 4.13150 4.19855 4.30082 4.34325 4.37325 4.38517 4.50220 4.55092 4.55783 4.61987 4.66211 4.74326 4.75824 4.84039 4.89485 4.91453 5.00262 5.07328 5.10304 5.20207 5.25182 5.26751 5.31070 5.37989 5.38098 5.45186 5.47197 5.51393 5.92292 6.60630 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.023683 B = 0.003736 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.007853 B = 7491.933532 C = 7822.610597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.054 4.054 3 H 0.107 0.893 4 C -0.070 4.070 5 C -0.106 4.106 6 C -0.137 4.137 7 C -0.123 4.123 8 C -0.082 4.082 9 O -0.556 6.556 10 Si 0.975 3.025 11 H -0.252 1.252 12 H -0.291 1.291 13 H -0.250 1.250 14 C -0.103 4.103 15 C -0.108 4.108 16 C 0.106 3.894 17 H 0.159 0.841 18 C -0.185 4.185 19 C -0.117 4.117 20 C -0.044 4.044 21 H 0.113 0.887 22 C -0.106 4.106 23 C -0.133 4.133 24 C -0.116 4.116 25 C -0.096 4.096 26 C 0.060 3.940 27 C 0.013 3.987 28 N -0.438 5.438 29 H 0.454 0.546 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.152 0.848 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.388 0.612 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.116 0.884 49 H 0.167 0.833 50 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 4.041 17.471 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.072 4.072 3 H 0.125 0.875 4 C -0.070 4.070 5 C -0.124 4.124 6 C -0.154 4.154 7 C -0.123 4.123 8 C -0.193 4.193 9 O -0.363 6.363 10 Si 0.801 3.199 11 H -0.176 1.176 12 H -0.218 1.218 13 H -0.174 1.174 14 C -0.121 4.121 15 C -0.126 4.126 16 C 0.005 3.995 17 H 0.177 0.823 18 C -0.203 4.203 19 C -0.136 4.136 20 C -0.062 4.062 21 H 0.131 0.869 22 C -0.144 4.144 23 C -0.171 4.171 24 C -0.154 4.154 25 C -0.134 4.134 26 C -0.023 4.023 27 C -0.106 4.106 28 N -0.028 5.028 29 H 0.301 0.699 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.237 0.763 37 H 0.137 0.863 38 H 0.154 0.846 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.135 0.865 49 H 0.185 0.815 50 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.956 3.028 17.138 17.848 hybrid contribution -0.425 0.174 -0.900 1.010 sum -4.381 3.202 16.238 17.121 Atomic orbital electron populations 1.22105 0.91879 1.04182 1.03930 1.20517 0.97265 1.00180 0.89256 0.87508 1.19490 0.97712 0.93739 0.96077 1.21160 0.99559 0.94402 0.97265 1.21211 0.98333 1.00135 0.95771 1.20351 0.99314 0.95783 0.96843 1.24963 1.04080 1.05908 0.84312 1.86518 1.28194 1.79800 1.41809 0.85312 0.80125 0.74933 0.79498 1.17621 1.21764 1.17364 1.21099 0.99432 0.93866 0.97711 1.21236 0.97186 1.00407 0.93788 1.22275 0.96013 0.98486 0.82704 0.82328 1.23222 0.91887 1.01068 1.04125 1.23615 1.01629 0.92238 0.96118 1.20049 0.93300 0.95036 0.97816 0.86944 1.21180 0.97220 0.93726 1.02295 1.21501 0.98962 0.97735 0.98881 1.21398 0.96824 0.99004 0.98219 1.21400 0.98159 0.91664 1.02128 1.24082 0.93244 0.86449 0.98541 1.26624 0.95634 0.96180 0.92167 1.47440 1.16310 1.22015 1.17029 0.69924 0.90578 0.89661 0.92330 0.83045 0.86146 0.86333 0.76295 0.86343 0.84556 0.83770 0.84178 0.90112 0.90883 0.91691 0.92207 0.90800 0.90143 0.88584 0.86523 0.81539 0.78605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 7.20 8.85 71.98 0.64 7.84 16 2 C -0.05 2.41 2.08 -11.54 -0.02 2.38 16 3 H 0.11 -4.88 4.92 -2.39 -0.01 -4.89 16 4 C -0.07 2.47 3.89 -19.86 -0.08 2.39 16 5 C -0.11 3.47 8.76 22.27 0.20 3.67 16 6 C -0.14 3.51 8.67 22.27 0.19 3.70 16 7 C -0.12 2.75 5.39 -19.86 -0.11 2.64 16 8 C -0.08 1.58 2.82 71.24 0.20 1.78 16 9 O -0.56 8.91 12.77 -148.98 -1.90 7.01 16 10 Si 0.98 -17.59 25.07 68.60 1.72 -15.87 16 11 H -0.25 4.59 7.11 99.48 0.71 5.30 16 12 H -0.29 3.25 7.11 99.48 0.71 3.95 16 13 H -0.25 4.66 7.11 99.48 0.71 5.37 16 14 C -0.10 2.44 9.61 22.27 0.21 2.65 16 15 C -0.11 3.27 9.67 22.27 0.22 3.48 16 16 C 0.11 -5.37 2.37 44.14 0.10 -5.26 16 17 H 0.16 -8.46 7.56 -2.38 -0.02 -8.48 16 18 C -0.18 8.59 7.14 24.95 0.18 8.77 16 19 C -0.12 5.33 8.30 24.93 0.21 5.53 16 20 C -0.04 2.05 1.95 -11.84 -0.02 2.02 16 21 H 0.11 -5.18 5.87 -2.39 -0.01 -5.20 16 22 C -0.11 4.39 5.25 30.08 0.16 4.54 16 23 C -0.13 5.14 5.83 30.39 0.18 5.32 16 24 C -0.12 4.95 5.92 30.48 0.18 5.13 16 25 C -0.10 4.82 5.83 30.29 0.18 5.00 16 26 C 0.06 -3.16 2.37 3.26 0.01 -3.15 16 27 C 0.01 -0.76 9.72 86.46 0.84 0.08 16 28 N -0.44 25.02 2.02 -821.59 -1.66 23.36 16 29 H 0.45 -28.32 8.14 -89.69 -0.73 -29.05 16 30 H 0.08 -3.30 7.41 -2.39 -0.02 -3.31 16 31 H 0.08 -4.23 7.12 -2.39 -0.02 -4.24 16 32 H 0.06 -2.16 8.14 -2.39 -0.02 -2.18 16 33 H 0.15 -5.88 7.17 -2.91 -0.02 -5.90 16 34 H 0.12 -3.06 4.88 -2.91 -0.01 -3.08 16 35 H 0.12 -2.35 7.96 -2.38 -0.02 -2.37 16 36 H 0.39 -8.65 8.70 -74.06 -0.64 -9.29 16 37 H 0.12 -2.55 8.06 -2.91 -0.02 -2.57 16 38 H 0.14 -4.54 7.95 -2.91 -0.02 -4.57 16 39 H 0.14 -6.34 8.06 -2.91 -0.02 -6.37 16 40 H 0.14 -6.00 8.06 -2.91 -0.02 -6.03 16 41 H 0.08 -3.34 8.13 -2.39 -0.02 -3.36 16 42 H 0.07 -2.75 8.14 -2.39 -0.02 -2.77 16 43 H 0.06 -2.42 8.14 -2.39 -0.02 -2.44 16 44 H 0.06 -2.01 8.14 -2.39 -0.02 -2.03 16 45 H 0.07 -2.87 8.14 -2.38 -0.02 -2.89 16 46 H 0.08 -3.45 8.14 -2.39 -0.02 -3.46 16 47 H 0.10 -4.73 8.14 -2.39 -0.02 -4.75 16 48 H 0.12 -6.34 8.00 -2.39 -0.02 -6.36 16 49 H 0.17 -9.23 6.01 -2.38 -0.01 -9.24 16 50 H 0.20 -12.07 8.12 -2.39 -0.02 -12.09 16 Total: 1.00 -61.18 364.72 1.92 -59.26 By element: Atomic # 1 Polarization: -132.60 SS G_CDS: 0.31 Total: -132.29 kcal Atomic # 6 Polarization: 55.08 SS G_CDS: 3.45 Total: 58.53 kcal Atomic # 7 Polarization: 25.02 SS G_CDS: -1.66 Total: 23.36 kcal Atomic # 8 Polarization: 8.91 SS G_CDS: -1.90 Total: 7.01 kcal Atomic # 14 Polarization: -17.59 SS G_CDS: 1.72 Total: -15.87 kcal Total: -61.18 1.92 -59.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085547919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.838 kcal (2) G-P(sol) polarization free energy of solvation -61.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds