Wall clock time and date at job start Mon Mar 23 2020 11:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.46998 * 2 1 4 4 H 1.48501 * 109.46902 * 299.99848 * 3 2 1 5 5 H 1.48502 * 109.47313 * 59.99591 * 3 2 1 6 6 H 1.48495 * 109.47090 * 180.02562 * 3 2 1 7 7 C 1.50704 * 109.47198 * 239.99817 * 2 1 3 8 8 S 1.70907 * 125.55385 * 135.12764 * 7 2 1 9 9 C 1.70748 * 91.23431 * 180.02562 * 8 7 2 10 10 O 1.22545 * 124.72119 * 180.02562 * 9 8 7 11 11 N 1.31147 * 110.56003 * 359.77432 * 9 8 7 12 12 C 1.32121 * 115.64344 * 0.41663 * 11 9 8 13 13 N 1.38087 * 123.16229 * 179.83462 * 12 11 9 14 14 C 1.34547 * 119.20186 * 149.81605 * 13 12 11 15 15 C 1.35965 * 120.74047 * 179.97438 * 14 13 12 16 16 C 1.40869 * 119.19289 * 0.02802 * 15 14 13 17 17 C 1.40864 * 118.54024 * 359.97438 * 16 15 14 18 18 C 1.34540 * 119.20849 * 329.81945 * 13 12 11 19 19 C 1.47020 * 120.72913 * 179.97438 * 16 15 14 20 20 C 1.41740 * 120.23951 * 359.72559 * 19 16 15 21 21 C 1.34215 * 119.73505 * 179.75609 * 20 19 16 22 22 N 1.39684 * 120.25296 * 0.51822 * 21 20 19 23 23 H 1.00901 * 107.21092 * 236.90911 * 22 21 20 24 24 H 1.00894 * 107.17478 * 122.52331 * 22 21 20 25 25 C 1.39682 * 120.49706 * 359.73053 * 22 21 20 26 26 C 1.34211 * 120.25639 * 0.02562 * 25 22 21 27 27 H 1.08997 * 109.46813 * 119.99761 * 2 1 3 28 28 H 1.08005 * 119.63289 * 0.02562 * 14 13 12 29 29 H 1.08006 * 120.40287 * 180.29272 * 15 14 13 30 30 H 1.07994 * 120.40479 * 180.02562 * 17 16 15 31 31 H 1.08005 * 119.62899 * 0.02562 * 18 13 12 32 32 H 1.08001 * 120.13661 * 0.02562 * 20 19 16 33 33 H 1.07995 * 119.86976 * 180.27337 * 21 20 19 34 34 H 1.08000 * 119.87191 * 180.02562 * 25 22 21 35 35 H 1.08004 * 120.13156 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5550 2.4564 -1.2125 5 1 1.5549 2.4566 1.2124 6 1 3.5350 1.7565 -0.0006 7 6 1.9314 -0.7105 -1.2305 8 16 3.1917 -0.1652 -2.2479 9 6 3.0181 -1.5315 -3.2571 10 8 3.6925 -1.7515 -4.2563 11 7 2.0661 -2.3155 -2.8111 12 6 1.4503 -1.9022 -1.7176 13 7 0.4239 -2.6044 -1.1175 14 6 0.2566 -2.5125 0.2143 15 6 -0.7441 -3.1900 0.8375 16 6 -1.6097 -3.9950 0.0713 17 6 -1.4053 -4.0679 -1.3205 18 6 -0.3847 -3.3640 -1.8787 19 6 -2.7026 -4.7426 0.7103 20 6 -2.8953 -4.6663 2.1125 21 6 -3.8991 -5.3491 2.6846 22 7 -4.7455 -6.1412 1.9052 23 1 -5.6874 -5.8148 2.0612 24 1 -4.6971 -7.0797 2.2724 25 6 -4.5616 -6.2279 0.5232 26 6 -3.5672 -5.5498 -0.0705 27 1 1.7923 -0.5138 0.8900 28 1 0.9241 -1.8930 0.7949 29 1 -0.8763 -3.1086 1.9063 30 1 -2.0513 -4.6756 -1.9367 31 1 -0.2213 -3.4151 -2.9450 32 1 -2.2396 -4.0577 2.7175 33 1 -4.0507 -5.2890 3.7522 34 1 -5.2222 -6.8431 -0.0697 35 1 -3.4267 -5.6187 -1.1392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334157349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:40 Heat of formation + Delta-G solvation = 327.568354 kcal Electronic energy + Delta-G solvation = -23216.303907 eV Core-core repulsion = 19706.560866 eV Total energy + Delta-G solvation = -3509.743041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -45.30106 -43.97906 -42.78273 -40.54911 -38.43359 -37.85750 -35.43511 -35.04751 -34.22370 -32.70820 -30.10596 -27.79388 -27.47805 -26.76108 -25.63546 -25.13122 -23.79731 -22.08136 -21.79048 -21.32396 -20.56721 -20.05025 -20.01202 -19.23875 -18.98356 -18.64286 -18.12775 -18.01972 -17.85972 -17.78902 -17.43787 -16.97262 -16.88135 -16.28917 -15.76617 -15.38905 -15.24402 -15.12054 -14.61660 -14.47054 -14.30784 -14.21250 -13.86427 -13.71769 -13.52852 -12.89798 -12.64508 -12.59184 -12.46581 -12.35733 -12.16616 -10.17183 -9.31402 -5.31911 -2.96099 -2.03456 -1.86839 -1.69623 -1.68415 -1.23415 -0.89380 -0.67593 -0.39612 -0.33579 -0.02119 0.11360 0.13450 0.51085 0.77564 0.93513 1.02319 1.31660 1.52027 1.60145 1.73000 1.79266 1.90577 2.06370 2.09011 2.17501 2.32166 2.33360 2.39746 2.68220 2.73739 2.97365 3.00842 3.06914 3.14951 3.38290 3.47918 3.48920 3.52933 3.70264 3.88723 3.93448 3.96524 4.35139 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.003951 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.125172 B = 7085.395789 C = 8210.424317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.498 6.498 2 C -0.074 4.074 3 Si 1.027 2.973 4 H -0.220 1.220 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.205 4.205 8 S 0.185 5.815 9 C 0.447 3.553 10 O -0.333 6.333 11 N -0.531 5.531 12 C 0.454 3.546 13 N -0.358 5.358 14 C 0.144 3.856 15 C -0.159 4.159 16 C 0.135 3.865 17 C -0.182 4.182 18 C 0.151 3.849 19 C -0.290 4.290 20 C 0.031 3.969 21 C -0.212 4.212 22 N -0.352 5.352 23 H 0.403 0.597 24 H 0.403 0.597 25 C -0.212 4.212 26 C 0.031 3.969 27 H 0.213 0.787 28 H 0.188 0.812 29 H 0.174 0.826 30 H 0.173 0.827 31 H 0.196 0.804 32 H 0.149 0.851 33 H 0.189 0.811 34 H 0.189 0.811 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.766 -8.571 11.176 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.424 6.424 2 C -0.182 4.182 3 Si 0.823 3.177 4 H -0.141 1.141 5 H -0.125 1.125 6 H -0.123 1.123 7 C -0.339 4.339 8 S 0.422 5.578 9 C 0.121 3.879 10 O -0.205 6.205 11 N -0.276 5.276 12 C 0.196 3.804 13 N -0.036 5.036 14 C 0.019 3.981 15 C -0.180 4.180 16 C 0.131 3.869 17 C -0.203 4.203 18 C 0.026 3.974 19 C -0.293 4.293 20 C 0.013 3.987 21 C -0.320 4.320 22 N 0.162 4.838 23 H 0.237 0.763 24 H 0.236 0.764 25 C -0.320 4.320 26 C 0.013 3.987 27 H 0.226 0.774 28 H 0.205 0.795 29 H 0.191 0.809 30 H 0.190 0.810 31 H 0.213 0.787 32 H 0.166 0.834 33 H 0.206 0.794 34 H 0.206 0.794 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.163 -7.188 9.631 15.112 hybrid contribution -1.413 -1.309 0.222 1.939 sum -10.576 -8.497 9.853 16.767 Atomic orbital electron populations 1.95230 1.06588 1.45239 1.95319 1.26312 0.97309 1.01849 0.92746 0.85960 0.80709 0.64078 0.86964 1.14137 1.12524 1.12317 1.28008 0.97746 0.93070 1.15084 1.85399 1.27893 1.27960 1.16574 1.22692 0.85942 0.88262 0.91019 1.91234 1.39670 1.69286 1.20331 1.68799 1.12867 1.33867 1.12087 1.18451 0.86203 0.87937 0.87783 1.39427 1.21818 1.35008 1.07343 1.22496 0.99081 0.95593 0.80949 1.21363 0.94886 0.99154 1.02637 1.19582 0.88920 0.86163 0.92197 1.21364 1.00057 1.03848 0.95016 1.22591 0.88209 0.87400 0.99189 1.18226 1.04447 1.13658 0.93002 1.20820 0.92829 0.91308 0.93754 1.22734 1.01917 1.09644 0.97687 1.38156 1.17471 1.17146 1.11031 0.76344 0.76362 1.22735 1.10568 1.17222 0.81436 1.20827 0.89142 0.88044 1.00701 0.77360 0.79520 0.80914 0.81013 0.78744 0.83378 0.79374 0.79379 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.50 6.28 15.30 -35.23 -0.54 5.74 16 2 C -0.07 1.24 1.83 36.01 0.07 1.30 16 3 Si 1.03 -16.11 26.64 -169.99 -4.53 -20.64 16 4 H -0.22 3.00 7.11 56.52 0.40 3.41 16 5 H -0.20 3.03 7.11 56.52 0.40 3.43 16 6 H -0.20 3.43 7.11 56.52 0.40 3.84 16 7 C -0.21 3.17 5.64 -34.60 -0.20 2.98 16 8 S 0.19 -2.58 20.32 -107.50 -2.18 -4.76 16 9 C 0.45 -4.74 8.38 52.47 0.44 -4.30 16 10 O -0.33 2.25 18.11 4.41 0.08 2.33 16 11 N -0.53 6.37 10.06 -17.27 -0.17 6.20 16 12 C 0.45 -6.67 6.76 -156.77 -1.06 -7.73 16 13 N -0.36 5.86 2.63 -64.09 -0.17 5.69 16 14 C 0.14 -2.60 7.56 -17.18 -0.13 -2.73 16 15 C -0.16 3.03 9.45 -39.40 -0.37 2.66 16 16 C 0.14 -2.50 5.93 -104.35 -0.62 -3.12 16 17 C -0.18 3.39 9.45 -39.40 -0.37 3.01 16 18 C 0.15 -2.61 10.06 -17.18 -0.17 -2.78 16 19 C -0.29 5.61 5.98 -103.67 -0.62 4.99 16 20 C 0.03 -0.65 9.38 -39.66 -0.37 -1.02 16 21 C -0.21 4.92 10.73 -15.38 -0.17 4.76 16 22 N -0.35 9.08 1.83 -11.50 -0.02 9.06 16 23 H 0.40 -11.29 8.50 -39.29 -0.33 -11.63 16 24 H 0.40 -11.33 8.50 -39.29 -0.33 -11.66 16 25 C -0.21 4.88 10.73 -15.39 -0.17 4.71 16 26 C 0.03 -0.64 9.38 -39.67 -0.37 -1.01 16 27 H 0.21 -4.66 6.39 -51.93 -0.33 -4.99 16 28 H 0.19 -3.85 4.48 -52.48 -0.24 -4.08 16 29 H 0.17 -3.73 6.33 -52.48 -0.33 -4.07 16 30 H 0.17 -3.58 6.33 -52.49 -0.33 -3.92 16 31 H 0.20 -3.50 7.67 -52.48 -0.40 -3.90 16 32 H 0.15 -3.26 6.32 -52.49 -0.33 -3.59 16 33 H 0.19 -4.66 8.06 -52.49 -0.42 -5.08 16 34 H 0.19 -4.61 8.06 -52.49 -0.42 -5.03 16 35 H 0.15 -3.19 6.32 -52.48 -0.33 -3.52 16 LS Contribution 304.41 15.07 4.59 4.59 Total: 1.00 -31.21 304.41 -9.66 -40.87 By element: Atomic # 1 Polarization: -48.19 SS G_CDS: -2.61 Total: -50.79 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -4.11 Total: 1.71 kcal Atomic # 7 Polarization: 21.31 SS G_CDS: -0.36 Total: 20.95 kcal Atomic # 8 Polarization: 8.53 SS G_CDS: -0.46 Total: 8.07 kcal Atomic # 14 Polarization: -16.11 SS G_CDS: -4.53 Total: -20.64 kcal Atomic # 16 Polarization: -2.58 SS G_CDS: -2.18 Total: -4.76 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.21 -9.66 -40.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334157349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 368.439 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 337.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 327.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds