Wall clock time and date at job start Mon Mar 23 2020 11:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.46998 * 2 1 4 4 H 1.48501 * 109.46902 * 299.99848 * 3 2 1 5 5 H 1.48502 * 109.47313 * 59.99591 * 3 2 1 6 6 H 1.48495 * 109.47090 * 180.02562 * 3 2 1 7 7 C 1.50704 * 109.47198 * 239.99817 * 2 1 3 8 8 S 1.70907 * 125.55385 * 135.12764 * 7 2 1 9 9 C 1.70748 * 91.23431 * 180.02562 * 8 7 2 10 10 O 1.22545 * 124.72119 * 180.02562 * 9 8 7 11 11 N 1.31147 * 110.56003 * 359.77432 * 9 8 7 12 12 C 1.32121 * 115.64344 * 0.41663 * 11 9 8 13 13 N 1.38087 * 123.16229 * 179.83462 * 12 11 9 14 14 C 1.34547 * 119.20186 * 149.81605 * 13 12 11 15 15 C 1.35965 * 120.74047 * 179.97438 * 14 13 12 16 16 C 1.40869 * 119.19289 * 0.02802 * 15 14 13 17 17 C 1.40864 * 118.54024 * 359.97438 * 16 15 14 18 18 C 1.34540 * 119.20849 * 329.81945 * 13 12 11 19 19 C 1.47020 * 120.72913 * 179.97438 * 16 15 14 20 20 C 1.41740 * 120.23951 * 359.72559 * 19 16 15 21 21 C 1.34215 * 119.73505 * 179.75609 * 20 19 16 22 22 N 1.39684 * 120.25296 * 0.51822 * 21 20 19 23 23 H 1.00901 * 107.21092 * 236.90911 * 22 21 20 24 24 H 1.00894 * 107.17478 * 122.52331 * 22 21 20 25 25 C 1.39682 * 120.49706 * 359.73053 * 22 21 20 26 26 C 1.34211 * 120.25639 * 0.02562 * 25 22 21 27 27 H 1.08997 * 109.46813 * 119.99761 * 2 1 3 28 28 H 1.08005 * 119.63289 * 0.02562 * 14 13 12 29 29 H 1.08006 * 120.40287 * 180.29272 * 15 14 13 30 30 H 1.07994 * 120.40479 * 180.02562 * 17 16 15 31 31 H 1.08005 * 119.62899 * 0.02562 * 18 13 12 32 32 H 1.08001 * 120.13661 * 0.02562 * 20 19 16 33 33 H 1.07995 * 119.86976 * 180.27337 * 21 20 19 34 34 H 1.08000 * 119.87191 * 180.02562 * 25 22 21 35 35 H 1.08004 * 120.13156 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5550 2.4564 -1.2125 5 1 1.5549 2.4566 1.2124 6 1 3.5350 1.7565 -0.0006 7 6 1.9314 -0.7105 -1.2305 8 16 3.1917 -0.1652 -2.2479 9 6 3.0181 -1.5315 -3.2571 10 8 3.6925 -1.7515 -4.2563 11 7 2.0661 -2.3155 -2.8111 12 6 1.4503 -1.9022 -1.7176 13 7 0.4239 -2.6044 -1.1175 14 6 0.2566 -2.5125 0.2143 15 6 -0.7441 -3.1900 0.8375 16 6 -1.6097 -3.9950 0.0713 17 6 -1.4053 -4.0679 -1.3205 18 6 -0.3847 -3.3640 -1.8787 19 6 -2.7026 -4.7426 0.7103 20 6 -2.8953 -4.6663 2.1125 21 6 -3.8991 -5.3491 2.6846 22 7 -4.7455 -6.1412 1.9052 23 1 -5.6874 -5.8148 2.0612 24 1 -4.6971 -7.0797 2.2724 25 6 -4.5616 -6.2279 0.5232 26 6 -3.5672 -5.5498 -0.0705 27 1 1.7923 -0.5138 0.8900 28 1 0.9241 -1.8930 0.7949 29 1 -0.8763 -3.1086 1.9063 30 1 -2.0513 -4.6756 -1.9367 31 1 -0.2213 -3.4151 -2.9450 32 1 -2.2396 -4.0577 2.7175 33 1 -4.0507 -5.2890 3.7522 34 1 -5.2222 -6.8431 -0.0697 35 1 -3.4267 -5.6187 -1.1392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334157349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:39 Heat of formation + Delta-G solvation = 283.422324 kcal Electronic energy + Delta-G solvation = -23218.218223 eV Core-core repulsion = 19706.560866 eV Total energy + Delta-G solvation = -3511.657356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.10491 -43.51193 -40.36931 -38.65651 -37.20118 -34.83821 -34.52521 -34.29452 -33.13374 -29.88421 -28.86273 -26.65985 -25.93680 -24.95605 -24.22517 -23.89697 -21.74923 -20.99876 -20.51909 -19.85135 -19.15678 -19.10840 -18.23525 -17.96801 -17.23815 -17.08626 -16.70890 -16.50787 -16.12964 -15.97527 -15.90328 -15.38551 -14.91710 -14.72129 -14.39635 -14.23160 -14.08319 -13.83113 -13.21426 -13.08031 -12.67771 -12.45724 -12.15797 -11.88388 -11.86995 -11.77355 -11.49937 -11.11301 -10.38766 -9.88178 -8.74801 -8.37170 -7.98895 -3.51955 -1.39383 -0.75123 -0.54736 -0.07103 0.31178 0.41853 0.59292 0.76115 1.30921 1.36767 1.50624 1.51230 1.62169 1.77888 1.95141 2.16457 2.23460 2.25337 2.33663 2.74134 2.90090 3.06236 3.15975 3.19449 3.54167 3.59696 3.67559 3.91736 3.96602 3.98368 4.09630 4.17815 4.23367 4.28598 4.45049 4.54443 4.54987 4.79935 4.93307 5.16324 5.24880 6.63119 7.05998 7.12537 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.003951 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.125172 B = 7085.395789 C = 8210.424317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.859 6.859 2 C 0.065 3.935 3 Si 0.868 3.132 4 H -0.312 1.312 5 H -0.255 1.255 6 H -0.280 1.280 7 C -0.260 4.260 8 S -0.109 6.109 9 C 0.434 3.566 10 O -0.603 6.603 11 N -0.646 5.646 12 C 0.214 3.786 13 N -0.209 5.209 14 C 0.142 3.858 15 C -0.043 4.043 16 C -0.051 4.051 17 C -0.051 4.051 18 C 0.085 3.915 19 C 0.264 3.736 20 C -0.180 4.180 21 C 0.218 3.782 22 N -0.439 5.439 23 H 0.510 0.490 24 H 0.511 0.489 25 C 0.217 3.783 26 C -0.176 4.176 27 H 0.049 0.951 28 H 0.184 0.816 29 H 0.244 0.756 30 H 0.251 0.749 31 H 0.180 0.820 32 H 0.214 0.786 33 H 0.302 0.698 34 H 0.304 0.696 35 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -57.025 -49.822 33.305 82.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.805 6.805 2 C -0.057 4.057 3 Si 0.700 3.300 4 H -0.240 1.240 5 H -0.180 1.180 6 H -0.207 1.207 7 C -0.389 4.389 8 S 0.136 5.864 9 C 0.110 3.890 10 O -0.498 6.498 11 N -0.406 5.406 12 C -0.009 4.009 13 N 0.135 4.865 14 C 0.002 3.998 15 C -0.061 4.061 16 C -0.060 4.060 17 C -0.068 4.068 18 C -0.053 4.053 19 C 0.261 3.739 20 C -0.198 4.198 21 C 0.109 3.891 22 N 0.023 4.977 23 H 0.375 0.625 24 H 0.375 0.625 25 C 0.108 3.892 26 C -0.194 4.194 27 H 0.065 0.935 28 H 0.200 0.800 29 H 0.260 0.740 30 H 0.267 0.733 31 H 0.197 0.803 32 H 0.231 0.769 33 H 0.317 0.683 34 H 0.319 0.681 35 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -55.480 -48.293 32.084 80.247 hybrid contribution 1.194 1.333 -0.977 2.039 sum -54.286 -46.960 31.107 78.230 Atomic orbital electron populations 1.94838 1.03569 1.88458 1.93614 1.22040 0.98224 0.97325 0.88071 0.87160 0.76923 0.87480 0.78455 1.23974 1.17960 1.20706 1.26411 1.02503 1.00625 1.09388 1.84054 1.37841 1.37331 1.27202 1.21720 0.88459 0.87903 0.90914 1.90846 1.53131 1.75873 1.29967 1.67976 1.19377 1.34791 1.18457 1.17189 0.95283 0.92634 0.95787 1.39909 1.15824 1.22528 1.08273 1.23671 1.01243 0.93349 0.81551 1.22475 0.88296 0.90047 1.05293 1.19776 0.95754 0.97187 0.93275 1.22413 0.93798 0.95515 0.95072 1.23443 0.90137 0.90534 1.01159 1.21353 0.81616 0.75954 0.95020 1.22576 1.02019 1.02762 0.92430 1.26159 0.82051 0.78887 1.02052 1.40877 1.22786 1.23097 1.10970 0.62544 0.62467 1.26206 0.93128 0.88928 0.80963 1.22575 0.93937 0.95518 1.07347 0.93499 0.79966 0.74031 0.73268 0.80304 0.76885 0.68312 0.68150 0.76382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.86 -10.49 15.30 -148.98 -2.28 -12.77 16 2 C 0.06 0.72 1.83 71.24 0.13 0.85 16 3 Si 0.87 15.11 26.64 68.60 1.83 16.94 16 4 H -0.31 -7.92 7.11 99.48 0.71 -7.22 16 5 H -0.26 -3.80 7.11 99.48 0.71 -3.09 16 6 H -0.28 -5.10 7.11 99.48 0.71 -4.39 16 7 C -0.26 -3.63 5.64 25.50 0.14 -3.49 16 8 S -0.11 -2.47 20.32 -56.49 -1.15 -3.62 16 9 C 0.43 10.97 8.38 130.35 1.09 12.06 16 10 O -0.60 -20.02 18.11 -7.13 -0.13 -20.15 16 11 N -0.65 -9.38 10.06 -328.38 -3.30 -12.69 16 12 C 0.21 1.22 6.76 133.05 0.90 2.12 16 13 N -0.21 3.14 2.63 -356.68 -0.94 2.20 16 14 C 0.14 -3.57 7.56 83.75 0.63 -2.93 16 15 C -0.04 2.15 9.45 22.39 0.21 2.36 16 16 C -0.05 3.19 5.93 -19.69 -0.12 3.07 16 17 C -0.05 2.69 9.45 22.38 0.21 2.91 16 18 C 0.09 -2.49 10.06 83.75 0.84 -1.65 16 19 C 0.26 -21.97 5.98 -19.25 -0.12 -22.08 16 20 C -0.18 16.47 9.38 22.22 0.21 16.68 16 21 C 0.22 -23.18 10.73 82.52 0.89 -22.29 16 22 N -0.44 50.49 1.83 -190.29 -0.35 50.15 16 23 H 0.51 -61.53 8.50 -89.69 -0.76 -62.30 16 24 H 0.51 -61.93 8.50 -89.70 -0.76 -62.69 16 25 C 0.22 -23.29 10.73 82.52 0.89 -22.40 16 26 C -0.18 16.37 9.38 22.21 0.21 16.58 16 27 H 0.05 0.12 6.39 -2.39 -0.02 0.10 16 28 H 0.18 -3.04 4.48 -2.91 -0.01 -3.05 16 29 H 0.24 -15.21 6.33 -2.91 -0.02 -15.23 16 30 H 0.25 -17.08 6.33 -2.91 -0.02 -17.10 16 31 H 0.18 -4.25 7.67 -2.91 -0.02 -4.27 16 32 H 0.21 -18.93 6.32 -2.91 -0.02 -18.95 16 33 H 0.30 -33.71 8.06 -2.91 -0.02 -33.74 16 34 H 0.30 -34.29 8.06 -2.91 -0.02 -34.32 16 35 H 0.22 -20.04 6.32 -2.91 -0.02 -20.06 16 Total: 1.00 -284.69 304.41 0.22 -284.47 By element: Atomic # 1 Polarization: -286.73 SS G_CDS: 0.42 Total: -286.31 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 6.12 Total: -18.22 kcal Atomic # 7 Polarization: 44.25 SS G_CDS: -4.59 Total: 39.66 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -2.41 Total: -32.92 kcal Atomic # 14 Polarization: 15.11 SS G_CDS: 1.83 Total: 16.94 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -1.15 Total: -3.62 kcal Total: -284.69 0.22 -284.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334157349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 567.890 kcal (2) G-P(sol) polarization free energy of solvation -284.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 283.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -284.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 283.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds