Wall clock time and date at job start Mon Mar 23 2020 11:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47145 * 2 1 4 4 O 1.42905 * 109.47164 * 120.00148 * 2 1 3 5 5 C 1.35901 * 116.99423 * 275.32215 * 4 2 1 6 6 C 1.38730 * 120.06174 * 5.08481 * 5 4 2 7 7 C 1.38137 * 119.94837 * 179.74094 * 6 5 4 8 8 C 1.38272 * 120.05494 * 0.51036 * 7 6 5 9 9 C 1.50696 * 119.94352 * 179.74440 * 8 7 6 10 10 O 1.42906 * 109.47015 * 120.02312 * 9 8 7 11 11 Si 1.86299 * 109.47379 * 0.02562 * 9 8 7 12 12 H 1.48497 * 109.46929 * 60.00087 * 11 9 8 13 13 H 1.48505 * 109.47102 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46992 * 299.99873 * 11 9 8 15 15 C 1.38263 * 120.10903 * 359.76320 * 8 7 6 16 16 C 1.38147 * 120.05734 * 359.97438 * 15 8 7 17 17 C 1.50702 * 109.47056 * 239.99766 * 2 1 3 18 18 O 1.21286 * 119.99970 * 244.99384 * 17 2 1 19 19 N 1.34768 * 120.00075 * 65.00325 * 17 2 1 20 20 C 1.47292 * 121.87435 * 359.97438 * 19 17 2 21 21 C 1.53042 * 109.33162 * 131.58016 * 20 19 17 22 22 N 1.47212 * 110.05919 * 48.92240 * 21 20 19 23 23 H 1.00892 * 111.16374 * 171.36448 * 22 21 20 24 24 C 1.47604 * 109.22581 * 48.56133 * 22 21 20 25 25 C 1.54070 * 106.91523 * 269.78267 * 24 22 21 26 26 C 1.48452 * 121.87714 * 180.02562 * 19 17 2 27 27 H 1.09007 * 114.07359 * 5.68139 * 26 19 17 28 28 C 1.48675 * 107.83558 * 294.13148 * 22 21 20 29 29 H 1.09001 * 109.46638 * 60.00360 * 1 2 3 30 30 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46878 * 300.00156 * 1 2 3 32 32 H 1.07999 * 120.02350 * 359.97438 * 6 5 4 33 33 H 1.07999 * 119.97843 * 180.23286 * 7 6 5 34 34 H 1.09007 * 109.47281 * 240.01880 * 9 8 7 35 35 H 0.96691 * 114.00014 * 299.99442 * 10 9 8 36 36 H 1.08000 * 119.96862 * 179.97438 * 15 8 7 37 37 H 1.07996 * 120.02862 * 179.97438 * 16 15 8 38 38 H 1.08996 * 109.49674 * 11.62146 * 20 19 17 39 39 H 1.09004 * 109.49024 * 251.53470 * 20 19 17 40 40 H 1.09000 * 109.35485 * 169.06378 * 21 20 19 41 41 H 1.08994 * 109.35402 * 288.78114 * 21 20 19 42 42 H 1.09004 * 110.01684 * 150.40407 * 24 22 21 43 43 H 1.08997 * 109.95055 * 29.12310 * 24 22 21 44 44 H 1.09001 * 110.41972 * 242.55626 * 25 24 22 45 45 H 1.08997 * 110.42275 * 120.08170 * 25 24 22 46 46 H 1.09008 * 111.02186 * 316.64428 * 28 22 21 47 47 H 1.09002 * 110.94807 * 192.90927 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1061 0.0610 2.3058 6 6 1.6545 1.3725 2.3285 7 6 1.7521 2.1154 3.4890 8 6 2.3090 1.5563 4.6244 9 6 2.4195 2.3709 5.8874 10 8 1.6855 1.7304 6.9330 11 14 1.7221 4.0729 5.5917 12 1 0.2947 3.9613 5.1980 13 1 1.8316 4.8758 6.8362 14 1 2.4848 4.7384 4.5052 15 6 2.7650 0.2512 4.6027 16 6 2.6647 -0.4977 3.4462 17 6 2.0323 -0.7105 -1.2305 18 8 2.6531 -1.7467 -1.1214 19 7 1.7920 -0.1943 -2.4519 20 6 1.0425 1.0608 -2.6322 21 6 1.8095 1.9758 -3.5897 22 7 2.2042 1.2284 -4.7949 23 1 2.5857 1.8444 -5.4969 24 6 1.0349 0.4933 -5.3156 25 6 1.0398 -0.8921 -4.6416 26 6 2.2667 -0.8593 -3.6914 27 1 2.7296 -1.8321 -3.5247 28 6 3.1841 0.1880 -4.3850 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.2235 1.8111 1.4407 33 1 1.3972 3.1352 3.5084 34 1 3.4674 2.4527 6.1766 35 1 0.7433 1.6239 6.7439 36 1 3.2000 -0.1831 5.4907 37 1 3.0215 -1.5169 3.4296 38 1 0.9272 1.5573 -1.6688 39 1 0.0595 0.8408 -3.0486 40 1 1.1735 2.8134 -3.8762 41 1 2.7018 2.3540 -3.0908 42 1 1.1158 0.3814 -6.3969 43 1 0.1182 1.0264 -5.0638 44 1 1.1578 -1.6777 -5.3879 45 1 0.1222 -1.0415 -4.0725 46 1 3.9134 0.5926 -3.6832 47 1 3.6803 -0.2440 -5.2541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854732147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:02 Heat of formation + Delta-G solvation = 51.700677 kcal Electronic energy + Delta-G solvation = -28379.482502 eV Core-core repulsion = 24534.348639 eV Total energy + Delta-G solvation = -3845.133862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -43.73687 -41.78265 -40.48471 -39.08254 -37.21177 -36.49301 -34.49950 -33.11575 -31.94655 -31.60773 -31.15058 -29.40412 -26.76320 -25.62523 -25.50277 -24.28364 -22.95226 -22.93853 -22.05341 -20.80066 -19.97091 -19.62825 -18.47235 -18.16934 -17.80519 -17.58021 -17.07419 -16.96780 -16.53144 -16.36330 -16.09661 -15.90728 -15.71469 -15.33478 -15.03817 -14.83183 -14.63554 -14.47715 -14.44617 -14.16582 -13.87859 -13.68635 -13.56435 -13.28782 -13.25884 -13.02445 -12.86327 -12.83516 -12.58159 -12.24137 -12.22316 -12.16412 -12.14304 -12.05045 -11.58771 -11.03715 -10.41229 -10.19047 -10.10648 -9.28788 0.19938 0.23078 0.81904 1.13241 1.17926 1.20861 1.45626 1.47926 1.94785 2.15149 2.46152 2.58650 2.66557 2.86090 3.04839 3.06740 3.43113 3.47843 3.53860 3.58965 3.63782 3.67453 3.78817 3.81400 3.86109 3.98703 4.01349 4.07127 4.21042 4.25385 4.28969 4.39083 4.39464 4.47608 4.50467 4.52960 4.57455 4.63424 4.67172 4.68685 4.80649 4.89115 4.98011 5.01399 5.07536 5.11671 5.15770 5.45900 5.61598 5.81076 6.25391 6.70336 6.76731 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.023547 B = 0.003085 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.803123 B = 9073.972436 C = 9726.344522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.056 3.944 3 H 0.136 0.864 4 O -0.317 6.317 5 C 0.124 3.876 6 C -0.196 4.196 7 C -0.087 4.087 8 C -0.159 4.159 9 C -0.085 4.085 10 O -0.559 6.559 11 Si 0.985 3.015 12 H -0.243 1.243 13 H -0.290 1.290 14 H -0.244 1.244 15 C -0.060 4.060 16 C -0.168 4.168 17 C 0.527 3.473 18 O -0.561 6.561 19 N -0.614 5.614 20 C 0.055 3.945 21 C -0.011 4.011 22 N -0.368 5.368 23 H 0.458 0.542 24 C 0.000 4.000 25 C -0.155 4.155 26 C 0.113 3.887 27 H 0.120 0.880 28 C -0.001 4.001 29 H 0.125 0.875 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.171 0.829 33 H 0.144 0.856 34 H 0.116 0.884 35 H 0.388 0.612 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.181 0.819 41 H 0.140 0.860 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.137 0.863 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 9.060 -30.411 31.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.003 4.003 3 H 0.153 0.847 4 O -0.230 6.230 5 C 0.079 3.921 6 C -0.214 4.214 7 C -0.105 4.105 8 C -0.160 4.160 9 C -0.195 4.195 10 O -0.366 6.366 11 Si 0.809 3.191 12 H -0.166 1.166 13 H -0.216 1.216 14 H -0.167 1.167 15 C -0.078 4.078 16 C -0.186 4.186 17 C 0.314 3.686 18 O -0.437 6.437 19 N -0.350 5.350 20 C -0.066 4.066 21 C -0.133 4.133 22 N 0.049 4.951 23 H 0.301 0.699 24 C -0.122 4.122 25 C -0.194 4.194 26 C 0.011 3.989 27 H 0.138 0.862 28 C -0.124 4.124 29 H 0.143 0.857 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.188 0.812 33 H 0.161 0.839 34 H 0.134 0.866 35 H 0.237 0.763 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.198 0.802 41 H 0.158 0.842 42 H 0.174 0.826 43 H 0.172 0.828 44 H 0.128 0.872 45 H 0.114 0.886 46 H 0.155 0.845 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.866 9.014 -30.094 31.546 hybrid contribution 0.038 -1.022 0.430 1.109 sum -2.827 7.992 -29.664 30.852 Atomic orbital electron populations 1.22567 0.90667 1.04231 1.06501 1.22572 0.97086 0.98037 0.82568 0.84695 1.86217 1.81529 1.38553 1.16726 1.19085 0.95906 0.91039 0.86084 1.21417 1.06203 0.92870 1.00872 1.21100 0.97018 1.00202 0.92154 1.20371 1.03124 0.95858 0.96603 1.25102 1.01901 1.05685 0.86802 1.86509 1.25835 1.82352 1.41874 0.85200 0.80627 0.73979 0.79278 1.16630 1.21590 1.16719 1.20922 0.96437 0.93435 0.96979 1.20642 1.04360 1.01553 0.92073 1.20427 0.78554 0.84518 0.85067 1.90842 1.41097 1.25300 1.86487 1.48786 1.56599 1.25588 1.04040 1.22950 0.96907 0.82823 1.03910 1.24307 1.07102 0.96495 0.85404 1.45828 1.15727 1.16535 1.17029 0.69904 1.24406 0.90256 0.93018 1.04470 1.23242 0.98577 0.98375 0.99187 1.23381 0.95324 0.98081 0.82163 0.86198 1.25168 0.92349 0.89115 1.05763 0.85720 0.92895 0.89898 0.81168 0.83880 0.86625 0.76270 0.85132 0.85850 0.85225 0.85924 0.80162 0.84168 0.82608 0.82809 0.87174 0.88631 0.84496 0.81731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 6.25 8.80 71.98 0.63 6.88 16 2 C 0.06 -1.72 1.82 29.85 0.05 -1.67 16 3 H 0.14 -5.26 5.58 -2.39 -0.01 -5.27 16 4 O -0.32 5.50 9.34 -73.44 -0.69 4.81 16 5 C 0.12 -2.16 6.60 22.51 0.15 -2.01 16 6 C -0.20 4.64 8.23 22.36 0.18 4.83 16 7 C -0.09 1.82 8.66 22.25 0.19 2.01 16 8 C -0.16 2.60 5.39 -19.85 -0.11 2.49 16 9 C -0.09 1.36 2.82 71.23 0.20 1.56 16 10 O -0.56 7.11 12.77 -148.98 -1.90 5.21 16 11 Si 0.99 -17.52 25.07 68.60 1.72 -15.80 16 12 H -0.24 4.71 7.11 99.48 0.71 5.41 16 13 H -0.29 3.25 7.11 99.48 0.71 3.96 16 14 H -0.24 4.73 7.11 99.48 0.71 5.44 16 15 C -0.06 0.81 9.60 22.25 0.21 1.02 16 16 C -0.17 2.19 9.99 22.37 0.22 2.42 16 17 C 0.53 -15.79 7.16 87.66 0.63 -15.16 16 18 O -0.56 8.82 16.23 15.94 0.26 9.08 16 19 N -0.61 27.58 2.70 -782.11 -2.11 25.47 16 20 C 0.06 -3.12 4.21 86.24 0.36 -2.75 16 21 C -0.01 0.70 5.70 86.26 0.49 1.19 16 22 N -0.37 25.08 1.03 -881.04 -0.91 24.16 16 23 H 0.46 -34.20 8.77 -89.70 -0.79 -34.99 16 24 C 0.00 0.02 6.07 86.53 0.53 0.55 16 25 C -0.16 8.32 5.96 31.72 0.19 8.51 16 26 C 0.11 -5.44 4.47 46.26 0.21 -5.24 16 27 H 0.12 -4.65 7.47 -2.38 -0.02 -4.67 16 28 C 0.00 0.05 6.41 86.84 0.56 0.61 16 29 H 0.12 -5.54 5.50 -2.39 -0.01 -5.56 16 30 H 0.05 -1.42 8.14 -2.39 -0.02 -1.44 16 31 H 0.08 -2.69 6.91 -2.39 -0.02 -2.71 16 32 H 0.17 -5.74 5.43 -2.91 -0.02 -5.76 16 33 H 0.14 -3.58 4.87 -2.91 -0.01 -3.59 16 34 H 0.12 -1.87 7.96 -2.38 -0.02 -1.89 16 35 H 0.39 -7.54 8.70 -74.06 -0.64 -8.19 16 36 H 0.13 -1.72 8.06 -2.91 -0.02 -1.74 16 37 H 0.12 -1.46 8.06 -2.91 -0.02 -1.48 16 38 H 0.13 -7.33 5.13 -2.39 -0.01 -7.35 16 39 H 0.12 -7.36 6.11 -2.38 -0.01 -7.38 16 40 H 0.18 -12.92 8.14 -2.39 -0.02 -12.94 16 41 H 0.14 -9.20 7.86 -2.39 -0.02 -9.22 16 42 H 0.16 -10.42 8.14 -2.38 -0.02 -10.44 16 43 H 0.15 -10.39 6.93 -2.39 -0.02 -10.41 16 44 H 0.11 -5.65 8.14 -2.39 -0.02 -5.67 16 45 H 0.10 -4.74 7.48 -2.39 -0.02 -4.76 16 46 H 0.14 -7.86 7.79 -2.38 -0.02 -7.88 16 47 H 0.17 -10.19 8.14 -2.39 -0.02 -10.21 16 Total: 1.00 -91.96 349.65 1.41 -90.56 By element: Atomic # 1 Polarization: -149.06 SS G_CDS: 0.34 Total: -148.73 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 4.70 Total: 5.23 kcal Atomic # 7 Polarization: 52.66 SS G_CDS: -3.02 Total: 49.63 kcal Atomic # 8 Polarization: 21.43 SS G_CDS: -2.33 Total: 19.10 kcal Atomic # 14 Polarization: -17.52 SS G_CDS: 1.72 Total: -15.80 kcal Total: -91.96 1.41 -90.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854732147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.257 kcal (2) G-P(sol) polarization free energy of solvation -91.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds