Wall clock time and date at job start Mon Mar 23 2020 11:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99687 * 2 1 4 4 O 1.21703 * 120.00044 * 185.39865 * 3 2 1 5 5 C 1.46579 * 120.00372 * 5.40297 * 3 2 1 6 6 C 1.36650 * 125.46177 * 175.07247 * 5 3 2 7 7 C 1.37472 * 113.29825 * 180.02562 * 6 5 3 8 8 C 1.33813 * 115.10069 * 359.97438 * 7 6 5 9 9 C 1.50706 * 124.52399 * 180.02562 * 8 7 6 10 10 O 1.42896 * 109.46896 * 300.02874 * 9 8 7 11 11 Si 1.86299 * 109.47336 * 180.02562 * 9 8 7 12 12 H 1.48497 * 109.47172 * 59.99881 * 11 9 8 13 13 H 1.48500 * 109.46997 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46983 * 300.00061 * 11 9 8 15 15 S 1.70616 * 110.95575 * 0.02562 * 8 7 6 16 16 C 1.46852 * 119.99998 * 179.97438 * 2 1 3 17 17 H 1.09681 * 108.30145 * 172.80215 * 16 2 1 18 18 C 1.52411 * 109.46231 * 54.01448 * 16 2 1 19 19 C 1.52393 * 112.07122 * 191.05940 * 18 16 2 20 20 N 1.46044 * 112.01703 * 48.51982 * 19 18 16 21 21 C 1.46056 * 113.43170 * 68.46582 * 20 19 18 22 22 C 1.52337 * 112.30665 * 286.51269 * 21 20 19 23 23 O 1.41519 * 113.34572 * 319.56810 * 22 21 20 24 24 C 1.41817 * 118.89203 * 41.27014 * 23 22 21 25 25 H 1.09874 * 109.26797 * 190.15513 * 24 23 22 26 26 C 1.46744 * 111.70486 * 301.36137 * 20 19 18 27 27 H 1.09002 * 109.47143 * 54.83321 * 1 2 3 28 28 H 1.09007 * 109.46974 * 174.82980 * 1 2 3 29 29 H 1.09000 * 109.47387 * 294.82769 * 1 2 3 30 30 H 1.07995 * 123.34820 * 0.05431 * 6 5 3 31 31 H 1.08001 * 122.45147 * 180.02562 * 7 6 5 32 32 H 1.09006 * 109.46674 * 60.02212 * 9 8 7 33 33 H 0.96708 * 113.99696 * 299.99204 * 10 9 8 34 34 H 1.08710 * 110.67841 * 315.00272 * 18 16 2 35 35 H 1.10276 * 108.23701 * 71.83208 * 18 16 2 36 36 H 1.09554 * 109.15242 * 169.73727 * 19 18 16 37 37 H 1.09577 * 109.13109 * 287.34751 * 19 18 16 38 38 H 1.09662 * 109.30063 * 47.77979 * 21 20 19 39 39 H 1.09677 * 109.26949 * 165.27982 * 21 20 19 40 40 H 1.09034 * 110.30188 * 84.54743 * 22 21 20 41 41 H 1.10593 * 107.85258 * 199.91790 * 22 21 20 42 42 H 1.08864 * 110.04919 * 184.68694 * 26 20 19 43 43 H 1.08850 * 110.06806 * 306.09177 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3518 1.1696 -0.0992 5 6 1.4108 2.4338 0.1195 6 6 1.9831 3.6701 0.2271 7 6 1.0643 4.6878 0.3261 8 6 -0.2164 4.3009 0.3001 9 6 -1.3937 5.2372 0.3929 10 8 -1.3366 5.9529 1.6284 11 14 -2.9754 4.2558 0.3161 12 1 -3.0170 3.2947 1.4473 13 1 -4.1353 5.1786 0.4070 14 1 -3.0345 3.5121 -0.9679 15 16 -0.3388 2.6059 0.1478 16 6 2.1993 -1.2718 0.0006 17 1 3.2662 -1.0535 -0.1300 18 6 1.7219 -2.1343 -1.1618 19 6 2.2412 -3.5637 -1.0652 20 7 2.0323 -4.1335 0.2632 21 6 0.6260 -4.3688 0.5797 22 6 -0.1268 -3.0755 0.8647 23 8 0.6199 -2.1492 1.6310 24 6 1.9970 -1.9732 1.3418 25 1 2.4592 -1.3672 2.1333 26 6 2.6934 -3.3386 1.3046 27 1 -0.3633 0.5919 -0.8401 28 1 -0.3633 -1.0236 -0.0926 29 1 -0.3634 0.4315 0.9327 30 1 3.0509 3.8315 0.2333 31 1 1.3548 5.7240 0.4173 32 1 -1.3630 5.9428 -0.4374 33 1 -1.3597 5.3869 2.4123 34 1 0.6368 -2.1255 -1.2261 35 1 2.1019 -1.6925 -2.0981 36 1 1.7293 -4.1832 -1.8099 37 1 3.3116 -3.5736 -1.2993 38 1 0.1470 -4.8859 -0.2604 39 1 0.5571 -5.0252 1.4557 40 1 -0.4679 -2.6232 -0.0668 41 1 -1.0407 -3.3331 1.4318 42 1 2.5911 -3.8301 2.2706 43 1 3.7466 -3.2081 1.0628 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868614769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:06 Heat of formation + Delta-G solvation = -53.210792 kcal Electronic energy + Delta-G solvation = -27266.159518 eV Core-core repulsion = 23519.284339 eV Total energy + Delta-G solvation = -3746.875179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.40444 -40.58177 -39.26395 -37.39602 -36.97004 -36.71767 -33.78749 -32.24841 -31.57019 -29.64199 -28.31776 -27.53831 -25.64065 -24.58876 -24.02759 -23.46965 -22.01671 -20.34821 -19.98010 -19.12471 -18.30877 -17.64108 -17.41607 -17.16247 -17.02916 -16.87479 -16.64139 -16.45430 -16.34387 -15.82616 -15.53656 -15.03073 -14.63793 -14.53979 -14.31053 -14.22629 -14.14112 -14.00884 -13.62227 -13.53505 -13.44017 -13.35118 -12.77803 -12.69038 -12.65777 -12.43425 -12.29836 -12.21867 -12.03831 -11.77599 -11.44173 -11.07190 -10.79620 -10.66994 -9.96700 -9.72181 -9.47628 -9.19819 -0.58920 0.28269 0.70842 0.99343 1.23894 1.33072 1.39409 1.70356 1.76372 2.16143 2.51441 2.75703 3.27192 3.29483 3.45931 3.55518 3.60452 3.65513 3.67099 3.76335 3.88947 3.95490 4.11054 4.19315 4.20268 4.28270 4.29743 4.33291 4.40344 4.42736 4.47807 4.52709 4.66528 4.70185 4.73029 4.78759 4.84145 4.93365 4.99803 5.12406 5.30233 5.34914 5.83439 5.96244 6.14925 6.26733 6.37464 7.01646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.600 5.600 3 C 0.592 3.408 4 O -0.528 6.528 5 C -0.261 4.261 6 C -0.050 4.050 7 C -0.119 4.119 8 C -0.257 4.257 9 C -0.040 4.040 10 O -0.532 6.532 11 Si 0.886 3.114 12 H -0.232 1.232 13 H -0.223 1.223 14 H -0.231 1.231 15 S 0.204 5.796 16 C 0.120 3.880 17 H 0.114 0.886 18 C -0.172 4.172 19 C 0.063 3.937 20 N -0.540 5.540 21 C 0.028 3.972 22 C 0.021 3.979 23 O -0.366 6.366 24 C 0.051 3.949 25 H 0.111 0.889 26 C 0.033 3.967 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.126 0.874 33 H 0.378 0.622 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 -2.727 -0.579 4.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.332 5.332 3 C 0.380 3.620 4 O -0.406 6.406 5 C -0.380 4.380 6 C -0.083 4.083 7 C -0.149 4.149 8 C -0.375 4.375 9 C -0.153 4.153 10 O -0.337 6.337 11 Si 0.705 3.295 12 H -0.154 1.154 13 H -0.145 1.145 14 H -0.154 1.154 15 S 0.473 5.527 16 C 0.017 3.983 17 H 0.132 0.868 18 C -0.212 4.212 19 C -0.066 4.066 20 N -0.261 5.261 21 C -0.101 4.101 22 C -0.057 4.057 23 O -0.284 6.284 24 C -0.009 4.009 25 H 0.129 0.871 26 C -0.096 4.096 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.172 0.828 31 H 0.165 0.835 32 H 0.144 0.856 33 H 0.226 0.774 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.271 -4.033 -1.038 6.717 hybrid contribution 1.190 1.643 0.127 2.033 sum -4.081 -2.390 -0.911 4.816 Atomic orbital electron populations 1.22086 0.79868 1.04484 1.02218 1.47645 1.06783 1.05235 1.73560 1.17022 0.86566 0.82167 0.76199 1.90839 1.12955 1.86618 1.50213 1.24517 0.96806 0.97743 1.18978 1.20824 1.01749 0.89760 0.96013 1.19950 0.90847 1.01281 1.02855 1.25188 1.00532 1.01902 1.09916 1.24409 1.01345 0.98802 0.90760 1.86541 1.96791 1.35955 1.14393 0.86379 0.78832 0.80672 0.83606 1.15429 1.14531 1.15438 1.83621 1.03100 0.98055 1.67916 1.21611 0.98990 0.82771 0.94918 0.86812 1.22574 1.02435 0.97169 0.98978 1.21952 1.02665 0.91727 0.90222 1.60736 1.13341 1.49788 1.02267 1.22480 0.87535 0.96597 1.03457 1.23058 0.94973 0.90576 0.97076 1.87238 1.21001 1.60793 1.59360 1.23022 0.83239 0.97505 0.97117 0.87087 1.22703 0.99181 0.91162 0.96504 0.91553 0.88056 0.90716 0.82751 0.83531 0.85637 0.77440 0.90800 0.90634 0.89827 0.89855 0.89535 0.89640 0.92953 0.88931 0.88803 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.05 7.09 59.85 0.42 0.38 16 2 N -0.60 -0.75 2.75 -175.47 -0.48 -1.23 16 3 C 0.59 2.16 7.63 -12.90 -0.10 2.06 16 4 O -0.53 -3.53 16.15 5.19 0.08 -3.45 16 5 C -0.26 -0.60 6.33 -36.79 -0.23 -0.83 16 6 C -0.05 -0.10 10.01 -40.43 -0.40 -0.50 16 7 C -0.12 -0.10 9.95 -41.41 -0.41 -0.51 16 8 C -0.26 -0.05 5.57 -35.86 -0.20 -0.25 16 9 C -0.04 0.04 2.95 36.01 0.11 0.14 16 10 O -0.53 0.09 12.85 -35.23 -0.45 -0.37 16 11 Si 0.89 -1.14 26.15 -169.99 -4.45 -5.59 16 12 H -0.23 0.31 7.11 56.52 0.40 0.71 16 13 H -0.22 0.07 7.11 56.52 0.40 0.47 16 14 H -0.23 0.26 7.11 56.52 0.40 0.66 16 15 S 0.20 0.00 14.63 -107.50 -1.57 -1.57 16 16 C 0.12 0.04 2.44 -68.19 -0.17 -0.12 16 17 H 0.11 0.22 6.88 -51.54 -0.35 -0.14 16 18 C -0.17 0.21 4.59 -27.34 -0.13 0.08 16 19 C 0.06 -0.10 5.76 -4.60 -0.03 -0.13 16 20 N -0.54 0.51 4.91 -235.80 -1.16 -0.65 16 21 C 0.03 -0.05 5.89 -4.62 -0.03 -0.08 16 22 C 0.02 -0.04 5.38 36.82 0.20 0.16 16 23 O -0.37 -0.08 8.66 -35.14 -0.30 -0.38 16 24 C 0.05 -0.01 3.40 -26.72 -0.09 -0.10 16 25 H 0.11 0.06 8.21 -51.43 -0.42 -0.37 16 26 C 0.03 -0.03 5.87 -3.75 -0.02 -0.05 16 27 H 0.07 -0.10 6.27 -40.18 -0.25 -0.35 16 28 H 0.10 -0.18 3.13 -51.93 -0.16 -0.34 16 29 H 0.07 -0.06 6.59 -46.73 -0.31 -0.37 16 30 H 0.15 0.26 8.06 -52.49 -0.42 -0.17 16 31 H 0.15 -0.01 8.06 -52.49 -0.42 -0.43 16 32 H 0.13 -0.21 7.96 -51.93 -0.41 -0.63 16 33 H 0.38 -1.23 8.70 45.56 0.40 -0.84 16 34 H 0.07 -0.12 4.46 -52.09 -0.23 -0.35 16 35 H 0.07 -0.05 8.25 -51.20 -0.42 -0.47 16 36 H 0.08 -0.20 8.09 -51.62 -0.42 -0.61 16 37 H 0.08 -0.14 8.19 -51.60 -0.42 -0.56 16 38 H 0.09 -0.25 8.07 -51.55 -0.42 -0.67 16 39 H 0.09 -0.15 8.20 -51.54 -0.42 -0.58 16 40 H 0.05 -0.14 4.26 -51.91 -0.22 -0.36 16 41 H 0.09 -0.26 8.27 -51.02 -0.42 -0.68 16 42 H 0.09 -0.09 8.13 -52.01 -0.42 -0.52 16 43 H 0.09 -0.14 8.12 -52.01 -0.42 -0.56 16 LS Contribution 328.17 15.07 4.95 4.95 Total: 0.00 -5.75 328.17 -9.44 -15.19 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -4.98 Total: -7.13 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.08 Total: 0.23 kcal Atomic # 7 Polarization: -0.24 SS G_CDS: -1.64 Total: -1.88 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -0.67 Total: -4.19 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: -4.45 Total: -5.59 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -1.57 Total: -1.57 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -5.75 -9.44 -15.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868614769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.021 kcal (2) G-P(sol) polarization free energy of solvation -5.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds