Wall clock time and date at job start Mon Mar 23 2020 11:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.99687 * 2 1 4 4 O 1.21703 * 120.00044 * 185.39865 * 3 2 1 5 5 C 1.46579 * 120.00372 * 5.40297 * 3 2 1 6 6 C 1.36650 * 125.46177 * 175.07247 * 5 3 2 7 7 C 1.37472 * 113.29825 * 180.02562 * 6 5 3 8 8 C 1.33813 * 115.10069 * 359.97438 * 7 6 5 9 9 C 1.50706 * 124.52399 * 180.02562 * 8 7 6 10 10 O 1.42896 * 109.46896 * 300.02874 * 9 8 7 11 11 Si 1.86299 * 109.47336 * 180.02562 * 9 8 7 12 12 H 1.48497 * 109.47172 * 59.99881 * 11 9 8 13 13 H 1.48500 * 109.46997 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46983 * 300.00061 * 11 9 8 15 15 S 1.70616 * 110.95575 * 0.02562 * 8 7 6 16 16 C 1.46852 * 119.99998 * 179.97438 * 2 1 3 17 17 H 1.09681 * 108.30145 * 172.80215 * 16 2 1 18 18 C 1.52411 * 109.46231 * 54.01448 * 16 2 1 19 19 C 1.52393 * 112.07122 * 191.05940 * 18 16 2 20 20 N 1.46044 * 112.01703 * 48.51982 * 19 18 16 21 21 C 1.46056 * 113.43170 * 68.46582 * 20 19 18 22 22 C 1.52337 * 112.30665 * 286.51269 * 21 20 19 23 23 O 1.41519 * 113.34572 * 319.56810 * 22 21 20 24 24 C 1.41817 * 118.89203 * 41.27014 * 23 22 21 25 25 H 1.09874 * 109.26797 * 190.15513 * 24 23 22 26 26 C 1.46744 * 111.70486 * 301.36137 * 20 19 18 27 27 H 1.09002 * 109.47143 * 54.83321 * 1 2 3 28 28 H 1.09007 * 109.46974 * 174.82980 * 1 2 3 29 29 H 1.09000 * 109.47387 * 294.82769 * 1 2 3 30 30 H 1.07995 * 123.34820 * 0.05431 * 6 5 3 31 31 H 1.08001 * 122.45147 * 180.02562 * 7 6 5 32 32 H 1.09006 * 109.46674 * 60.02212 * 9 8 7 33 33 H 0.96708 * 113.99696 * 299.99204 * 10 9 8 34 34 H 1.08710 * 110.67841 * 315.00272 * 18 16 2 35 35 H 1.10276 * 108.23701 * 71.83208 * 18 16 2 36 36 H 1.09554 * 109.15242 * 169.73727 * 19 18 16 37 37 H 1.09577 * 109.13109 * 287.34751 * 19 18 16 38 38 H 1.09662 * 109.30063 * 47.77979 * 21 20 19 39 39 H 1.09677 * 109.26949 * 165.27982 * 21 20 19 40 40 H 1.09034 * 110.30188 * 84.54743 * 22 21 20 41 41 H 1.10593 * 107.85258 * 199.91790 * 22 21 20 42 42 H 1.08864 * 110.04919 * 184.68694 * 26 20 19 43 43 H 1.08850 * 110.06806 * 306.09177 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3518 1.1696 -0.0992 5 6 1.4108 2.4338 0.1195 6 6 1.9831 3.6701 0.2271 7 6 1.0643 4.6878 0.3261 8 6 -0.2164 4.3009 0.3001 9 6 -1.3937 5.2372 0.3929 10 8 -1.3366 5.9529 1.6284 11 14 -2.9754 4.2558 0.3161 12 1 -3.0170 3.2947 1.4473 13 1 -4.1353 5.1786 0.4070 14 1 -3.0345 3.5121 -0.9679 15 16 -0.3388 2.6059 0.1478 16 6 2.1993 -1.2718 0.0006 17 1 3.2662 -1.0535 -0.1300 18 6 1.7219 -2.1343 -1.1618 19 6 2.2412 -3.5637 -1.0652 20 7 2.0323 -4.1335 0.2632 21 6 0.6260 -4.3688 0.5797 22 6 -0.1268 -3.0755 0.8647 23 8 0.6199 -2.1492 1.6310 24 6 1.9970 -1.9732 1.3418 25 1 2.4592 -1.3672 2.1333 26 6 2.6934 -3.3386 1.3046 27 1 -0.3633 0.5919 -0.8401 28 1 -0.3633 -1.0236 -0.0926 29 1 -0.3634 0.4315 0.9327 30 1 3.0509 3.8315 0.2333 31 1 1.3548 5.7240 0.4173 32 1 -1.3630 5.9428 -0.4374 33 1 -1.3597 5.3869 2.4123 34 1 0.6368 -2.1255 -1.2261 35 1 2.1019 -1.6925 -2.0981 36 1 1.7293 -4.1832 -1.8099 37 1 3.3116 -3.5736 -1.2993 38 1 0.1470 -4.8859 -0.2604 39 1 0.5571 -5.0252 1.4557 40 1 -0.4679 -2.6232 -0.0668 41 1 -1.0407 -3.3331 1.4318 42 1 2.5911 -3.8301 2.2706 43 1 3.7466 -3.2081 1.0628 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868614769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:05 Heat of formation + Delta-G solvation = -52.827659 kcal Electronic energy + Delta-G solvation = -27266.142904 eV Core-core repulsion = 23519.284339 eV Total energy + Delta-G solvation = -3746.858565 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.39485 -40.72753 -39.29415 -37.38737 -36.91286 -36.87230 -33.75994 -32.19805 -31.58151 -29.57217 -28.37215 -27.54828 -25.58028 -24.57788 -24.01715 -23.40282 -22.07336 -20.34617 -20.00201 -19.20796 -18.35517 -17.60708 -17.37403 -17.18017 -17.02904 -16.92493 -16.57963 -16.45555 -16.28929 -15.83275 -15.55650 -14.99587 -14.64089 -14.53101 -14.26587 -14.23731 -14.15520 -14.01505 -13.68803 -13.53860 -13.36543 -13.35114 -12.70172 -12.63742 -12.61471 -12.34540 -12.20452 -12.18586 -11.96322 -11.71987 -11.46062 -11.27331 -10.75201 -10.61271 -10.07776 -9.76811 -9.51481 -9.12277 -0.69871 0.22147 0.68872 1.04990 1.21343 1.37887 1.45328 1.62045 1.86088 1.98281 2.58748 2.86505 3.25033 3.38883 3.47643 3.55039 3.69203 3.70038 3.77128 3.84072 3.96543 4.04099 4.17997 4.21361 4.23839 4.30637 4.37643 4.38158 4.43200 4.51226 4.52495 4.56039 4.75751 4.79693 4.85094 4.86240 4.92324 4.98511 5.03276 5.06169 5.23375 5.27543 5.93650 6.02241 6.09180 6.33405 6.58830 6.81302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.596 5.596 3 C 0.585 3.415 4 O -0.572 6.572 5 C -0.286 4.286 6 C -0.057 4.057 7 C -0.128 4.128 8 C -0.254 4.254 9 C -0.042 4.042 10 O -0.546 6.546 11 Si 0.906 3.094 12 H -0.227 1.227 13 H -0.237 1.237 14 H -0.230 1.230 15 S 0.246 5.754 16 C 0.120 3.880 17 H 0.092 0.908 18 C -0.163 4.163 19 C 0.065 3.935 20 N -0.547 5.547 21 C 0.027 3.973 22 C 0.017 3.983 23 O -0.378 6.378 24 C 0.057 3.943 25 H 0.098 0.902 26 C 0.036 3.964 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.134 0.866 33 H 0.390 0.610 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 -3.346 -0.840 6.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.326 5.326 3 C 0.374 3.626 4 O -0.453 6.453 5 C -0.406 4.406 6 C -0.092 4.092 7 C -0.158 4.158 8 C -0.373 4.373 9 C -0.154 4.154 10 O -0.353 6.353 11 Si 0.725 3.275 12 H -0.150 1.150 13 H -0.160 1.160 14 H -0.153 1.153 15 S 0.516 5.484 16 C 0.017 3.983 17 H 0.110 0.890 18 C -0.203 4.203 19 C -0.064 4.064 20 N -0.269 5.269 21 C -0.101 4.101 22 C -0.061 4.061 23 O -0.297 6.297 24 C -0.003 4.003 25 H 0.115 0.885 26 C -0.092 4.092 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.096 0.904 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.151 0.849 33 H 0.240 0.760 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.094 -4.681 -1.290 8.597 hybrid contribution 1.685 1.837 0.232 2.503 sum -5.410 -2.844 -1.058 6.203 Atomic orbital electron populations 1.22260 0.78476 1.05590 1.02733 1.47745 1.07697 1.04906 1.72287 1.17307 0.86261 0.83169 0.75830 1.90802 1.14721 1.87307 1.52515 1.24538 0.98563 0.97239 1.20266 1.20902 1.01830 0.90219 0.96208 1.19989 0.90963 1.01349 1.03493 1.25451 1.00723 1.02473 1.08655 1.24555 1.01012 0.98932 0.90929 1.86513 1.96761 1.36874 1.15127 0.86099 0.77585 0.80127 0.83685 1.14994 1.15980 1.15309 1.83348 1.00676 0.97522 1.66889 1.21640 0.97911 0.82737 0.96033 0.88956 1.22512 1.02868 0.97110 0.97777 1.21967 1.02713 0.91423 0.90265 1.60755 1.14104 1.49671 1.02355 1.22532 0.86955 0.96619 1.04017 1.23201 0.95040 0.90296 0.97537 1.87215 1.20926 1.61525 1.60013 1.22877 0.83522 0.97704 0.96207 0.88459 1.22665 0.99215 0.90642 0.96725 0.90594 0.86748 0.90446 0.83455 0.82880 0.84855 0.76015 0.89846 0.91197 0.88513 0.90176 0.88138 0.89792 0.92042 0.87689 0.88764 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.11 7.09 127.77 0.91 0.80 16 2 N -0.60 -2.06 2.75 -827.29 -2.27 -4.33 16 3 C 0.58 5.37 7.63 86.42 0.66 6.03 16 4 O -0.57 -9.35 16.15 -4.36 -0.07 -9.42 16 5 C -0.29 -1.64 6.33 24.08 0.15 -1.49 16 6 C -0.06 -0.31 10.01 21.72 0.22 -0.09 16 7 C -0.13 -0.28 9.95 21.08 0.21 -0.07 16 8 C -0.25 -0.01 5.57 24.68 0.14 0.13 16 9 C -0.04 0.11 2.95 71.24 0.21 0.32 16 10 O -0.55 0.53 12.85 -148.98 -1.91 -1.39 16 11 Si 0.91 -3.34 26.15 68.60 1.79 -1.55 16 12 H -0.23 0.98 7.11 99.48 0.71 1.69 16 13 H -0.24 0.28 7.11 99.48 0.71 0.99 16 14 H -0.23 0.87 7.11 99.48 0.71 1.57 16 15 S 0.25 -0.12 14.63 -56.49 -0.83 -0.94 16 16 C 0.12 0.23 2.44 44.63 0.11 0.34 16 17 H 0.09 0.59 6.88 -2.02 -0.01 0.58 16 18 C -0.16 0.38 4.59 30.20 0.14 0.52 16 19 C 0.06 -0.23 5.76 86.26 0.50 0.26 16 20 N -0.55 1.21 4.91 -899.93 -4.42 -3.20 16 21 C 0.03 -0.13 5.89 86.24 0.51 0.38 16 22 C 0.02 -0.08 5.38 71.76 0.39 0.30 16 23 O -0.38 -0.09 8.66 -148.66 -1.29 -1.37 16 24 C 0.06 0.04 3.40 30.60 0.10 0.14 16 25 H 0.10 0.29 8.21 -1.92 -0.02 0.28 16 26 C 0.04 -0.05 5.87 86.44 0.51 0.46 16 27 H 0.08 -0.29 6.27 -9.86 -0.06 -0.35 16 28 H 0.11 -0.54 3.13 -2.38 -0.01 -0.55 16 29 H 0.08 -0.17 6.59 -5.69 -0.04 -0.21 16 30 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 31 H 0.15 0.06 8.06 -2.91 -0.02 0.03 16 32 H 0.13 -0.56 7.96 -2.38 -0.02 -0.58 16 33 H 0.39 -2.81 8.70 -74.05 -0.64 -3.45 16 34 H 0.08 -0.36 4.46 -2.54 -0.01 -0.37 16 35 H 0.07 -0.06 8.25 -1.70 -0.01 -0.08 16 36 H 0.10 -0.58 8.09 -2.09 -0.02 -0.59 16 37 H 0.08 -0.23 8.19 -2.08 -0.02 -0.25 16 38 H 0.10 -0.77 8.07 -2.03 -0.02 -0.78 16 39 H 0.08 -0.38 8.20 -2.03 -0.02 -0.39 16 40 H 0.06 -0.43 4.26 -2.37 -0.01 -0.44 16 41 H 0.11 -0.76 8.27 -1.53 -0.01 -0.77 16 42 H 0.09 -0.13 8.13 -2.46 -0.02 -0.15 16 43 H 0.09 -0.16 8.12 -2.47 -0.02 -0.18 16 Total: 0.00 -14.22 328.17 -3.13 -17.35 By element: Atomic # 1 Polarization: -4.28 SS G_CDS: 1.12 Total: -3.16 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 4.74 Total: 8.02 kcal Atomic # 7 Polarization: -0.85 SS G_CDS: -6.69 Total: -7.54 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -3.27 Total: -12.18 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 1.79 Total: -1.55 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -0.83 Total: -0.94 kcal Total: -14.22 -3.13 -17.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868614769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.473 kcal (2) G-P(sol) polarization free energy of solvation -14.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds