Wall clock time and date at job start Mon Mar 23 2020 11:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 119.99953 * 2 1 4 4 O 1.21706 * 120.00183 * 184.86325 * 3 2 1 5 5 C 1.46585 * 120.00086 * 4.85667 * 3 2 1 6 6 C 1.36643 * 125.45893 * 174.80989 * 5 3 2 7 7 C 1.37471 * 113.29899 * 180.02562 * 6 5 3 8 8 C 1.33820 * 115.10234 * 0.26369 * 7 6 5 9 9 C 1.50697 * 124.52868 * 179.72769 * 8 7 6 10 10 O 1.42898 * 109.46642 * 65.00500 * 9 8 7 11 11 Si 1.86295 * 109.47370 * 185.00351 * 9 8 7 12 12 H 1.48507 * 109.46741 * 60.00529 * 11 9 8 13 13 H 1.48502 * 109.47004 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47492 * 300.00551 * 11 9 8 15 15 S 1.70621 * 110.94837 * 359.59091 * 8 7 6 16 16 C 1.46857 * 120.00131 * 179.97438 * 2 1 3 17 17 H 1.09682 * 108.35311 * 172.74126 * 16 2 1 18 18 C 1.52449 * 109.52590 * 53.76237 * 16 2 1 19 19 C 1.52171 * 112.09230 * 191.33636 * 18 16 2 20 20 N 1.45871 * 112.97252 * 48.75342 * 19 18 16 21 21 H 1.02230 * 107.52058 * 185.38963 * 20 19 18 22 22 C 1.45863 * 112.56131 * 67.06744 * 20 19 18 23 23 C 1.52120 * 113.28737 * 287.70090 * 22 20 19 24 24 O 1.41554 * 113.39429 * 319.43426 * 23 22 20 25 25 C 1.41911 * 118.39535 * 41.35661 * 24 23 22 26 26 H 1.10010 * 109.27211 * 190.18367 * 25 24 23 27 27 C 1.46538 * 110.89806 * 302.26101 * 20 19 18 28 28 H 1.08997 * 109.47283 * 54.95981 * 1 2 3 29 29 H 1.08998 * 109.47063 * 174.96161 * 1 2 3 30 30 H 1.09008 * 109.47133 * 294.96256 * 1 2 3 31 31 H 1.07999 * 123.35329 * 359.97438 * 6 5 3 32 32 H 1.07997 * 122.45158 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.46971 * 305.00949 * 9 8 7 34 34 H 0.96696 * 114.00137 * 60.00375 * 10 9 8 35 35 H 1.08669 * 110.81901 * 315.67371 * 18 16 2 36 36 H 1.10404 * 108.10486 * 72.24494 * 18 16 2 37 37 H 1.09615 * 109.09230 * 170.13281 * 19 18 16 38 38 H 1.09620 * 109.08877 * 287.40112 * 19 18 16 39 39 H 1.09723 * 108.98483 * 49.30361 * 22 20 19 40 40 H 1.09729 * 108.94868 * 166.14874 * 22 20 19 41 41 H 1.09024 * 110.50382 * 84.73177 * 23 22 20 42 42 H 1.10710 * 107.82695 * 199.92532 * 23 22 20 43 43 H 1.08900 * 109.71555 * 183.98234 * 27 20 19 44 44 H 1.08889 * 109.72271 * 304.64788 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3526 1.1692 -0.0894 5 6 1.4099 2.4344 0.1075 6 6 1.9812 3.6706 0.2190 7 6 1.0617 4.6890 0.3042 8 6 -0.2188 4.3019 0.2696 9 6 -1.3967 5.2382 0.3534 10 8 -1.4138 6.0861 -0.7967 11 14 -2.9735 4.2483 0.4187 12 1 -2.9556 3.3672 1.6140 13 1 -4.1342 5.1710 0.5006 14 1 -3.0877 3.4176 -0.8069 15 16 -0.3399 2.6072 0.1141 16 6 2.1993 -1.2718 0.0006 17 1 3.2663 -1.0546 -0.1311 18 6 1.7185 -2.1383 -1.1579 19 6 2.2325 -3.5669 -1.0558 20 7 2.0284 -4.1524 0.2646 21 1 2.4808 -5.0691 0.2680 22 6 0.6177 -4.3557 0.5747 23 6 -0.1291 -3.0604 0.8551 24 8 0.6157 -2.1383 1.6289 25 6 1.9958 -1.9756 1.3412 26 1 2.4635 -1.3738 2.1344 27 6 2.6786 -3.3451 1.3004 28 1 -0.3634 0.5900 -0.8414 29 1 -0.3633 -1.0237 -0.0903 30 1 -0.3634 0.4337 0.9317 31 1 3.0490 3.8316 0.2391 32 1 1.3515 5.7252 0.3964 33 1 -1.3129 5.8479 1.2531 34 1 -1.4868 5.6101 -1.6352 35 1 0.6342 -2.1226 -1.2279 36 1 2.1028 -1.7009 -2.0960 37 1 1.7223 -4.1857 -1.8031 38 1 3.3033 -3.5803 -1.2899 39 1 0.1379 -4.8710 -0.2668 40 1 0.5364 -5.0124 1.4500 41 1 -0.4665 -2.6049 -0.0762 42 1 -1.0486 -3.3142 1.4171 43 1 2.5749 -3.8353 2.2673 44 1 3.7338 -3.2215 1.0616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868614769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:13 Heat of formation + Delta-G solvation = 76.316308 kcal Electronic energy + Delta-G solvation = -27658.958698 eV Core-core repulsion = 23904.044496 eV Total energy + Delta-G solvation = -3754.914202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.01290 -42.34411 -40.58947 -40.12498 -38.61592 -38.06337 -36.18790 -35.07440 -33.01541 -32.23199 -30.01908 -29.19281 -28.13710 -27.23494 -26.21519 -25.11805 -23.58691 -22.80342 -22.05389 -21.08794 -20.69232 -20.39942 -19.96344 -19.62975 -18.99558 -18.65384 -18.62929 -18.08303 -17.77713 -17.53963 -17.32544 -17.02719 -16.74974 -16.56338 -16.41801 -16.19783 -15.84916 -15.66803 -15.54875 -15.39466 -15.21708 -15.16099 -14.89712 -14.64553 -14.52240 -14.28941 -14.11365 -13.90489 -13.46474 -13.17579 -13.03735 -12.80790 -12.38174 -12.28574 -11.42177 -11.37130 -10.74111 -10.47278 -1.70243 -1.58067 -0.66289 -0.23203 -0.02675 0.19986 0.23517 0.29348 0.33923 0.44476 0.49391 0.54660 0.59536 0.77839 0.99246 1.06021 1.16512 1.21217 1.33269 1.50787 1.63014 1.69872 1.75372 1.83498 1.89737 2.08589 2.17681 2.20662 2.32155 2.42470 2.52805 2.57720 2.63523 2.78927 2.83801 2.95767 3.00142 3.25979 3.39466 3.54320 3.66982 3.72834 4.03094 4.10210 4.25017 4.42518 4.73598 5.65269 5.71485 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.004048 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.105140 B = 6914.725757 C = 7689.309092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.607 5.607 3 C 0.602 3.398 4 O -0.519 6.519 5 C -0.279 4.279 6 C -0.034 4.034 7 C -0.122 4.122 8 C -0.239 4.239 9 C -0.046 4.046 10 O -0.528 6.528 11 Si 0.888 3.112 12 H -0.232 1.232 13 H -0.219 1.219 14 H -0.233 1.233 15 S 0.199 5.801 16 C 0.110 3.890 17 H 0.132 0.868 18 C -0.167 4.167 19 C -0.006 4.006 20 N -0.375 5.375 21 H 0.435 0.565 22 C -0.044 4.044 23 C 0.029 3.971 24 O -0.343 6.343 25 C 0.069 3.931 26 H 0.152 0.848 27 C -0.036 4.036 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.130 0.870 34 H 0.378 0.622 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.147 0.853 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 -24.475 -0.532 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.340 5.340 3 C 0.392 3.608 4 O -0.396 6.396 5 C -0.399 4.399 6 C -0.068 4.068 7 C -0.152 4.152 8 C -0.357 4.357 9 C -0.159 4.159 10 O -0.333 6.333 11 Si 0.707 3.293 12 H -0.155 1.155 13 H -0.141 1.141 14 H -0.156 1.156 15 S 0.468 5.532 16 C 0.005 3.995 17 H 0.149 0.851 18 C -0.205 4.205 19 C -0.128 4.128 20 N 0.047 4.953 21 H 0.271 0.729 22 C -0.167 4.167 23 C -0.047 4.047 24 O -0.260 6.260 25 C 0.010 3.990 26 H 0.169 0.831 27 C -0.159 4.159 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.175 0.825 32 H 0.169 0.831 33 H 0.147 0.853 34 H 0.225 0.775 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.100 0.900 42 H 0.151 0.849 43 H 0.165 0.835 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.778 -25.036 -0.075 25.048 hybrid contribution 1.743 0.492 -0.564 1.897 sum 2.522 -24.544 -0.639 24.682 Atomic orbital electron populations 1.22194 0.78997 1.03932 1.03880 1.47449 1.06911 1.04231 1.75388 1.17030 0.86441 0.82049 0.75302 1.90884 1.12866 1.86448 1.49405 1.24271 0.97096 0.97198 1.21308 1.20889 1.01934 0.89699 0.94325 1.20061 0.90799 1.01649 1.02670 1.25227 1.00750 1.01507 1.08247 1.24504 1.01122 0.96963 0.93292 1.86599 1.96435 1.34585 1.15644 0.86349 0.79166 0.80663 0.83129 1.15523 1.14070 1.15591 1.83435 1.02397 0.99080 1.68311 1.21606 1.00979 0.84435 0.92453 0.85076 1.22317 1.04509 0.91240 1.02452 1.23590 1.08819 0.98474 0.81914 1.44913 1.15787 1.19306 1.15295 0.72857 1.24198 0.79419 1.03663 1.09372 1.23000 0.95422 0.86188 1.00101 1.87580 1.19911 1.60375 1.58162 1.23122 0.82563 0.92807 1.00556 0.83119 1.24484 1.02103 0.95388 0.93896 0.90599 0.88793 0.89807 0.82538 0.83087 0.85273 0.77455 0.88365 0.86265 0.84340 0.84367 0.83924 0.84129 0.89952 0.84868 0.83507 0.83385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.98 7.07 59.84 0.42 -0.56 16 2 N -0.61 10.42 2.75 -175.41 -0.48 9.94 16 3 C 0.60 -7.29 7.64 -12.89 -0.10 -7.39 16 4 O -0.52 4.62 16.15 5.18 0.08 4.70 16 5 C -0.28 3.06 6.33 -36.79 -0.23 2.83 16 6 C -0.03 0.33 10.01 -40.44 -0.40 -0.07 16 7 C -0.12 1.16 10.00 -41.41 -0.41 0.74 16 8 C -0.24 2.44 5.54 -35.86 -0.20 2.24 16 9 C -0.05 0.46 2.94 36.00 0.11 0.57 16 10 O -0.53 4.60 12.88 -35.23 -0.45 4.15 16 11 Si 0.89 -9.37 26.17 -169.99 -4.45 -13.82 16 12 H -0.23 2.49 7.11 56.52 0.40 2.89 16 13 H -0.22 1.86 7.11 56.52 0.40 2.26 16 14 H -0.23 2.63 7.11 56.52 0.40 3.04 16 15 S 0.20 -2.46 14.64 -107.50 -1.57 -4.04 16 16 C 0.11 -2.41 2.47 -68.13 -0.17 -2.58 16 17 H 0.13 -2.67 6.89 -51.54 -0.35 -3.03 16 18 C -0.17 4.26 4.56 -27.44 -0.13 4.13 16 19 C -0.01 0.19 5.39 -4.80 -0.03 0.16 16 20 N -0.37 12.11 0.63 -236.57 -0.15 11.97 16 21 H 0.43 -15.52 8.41 -38.74 -0.33 -15.84 16 22 C -0.04 1.37 5.52 -4.83 -0.03 1.34 16 23 C 0.03 -0.78 5.33 36.71 0.20 -0.58 16 24 O -0.34 7.86 8.67 -35.16 -0.30 7.55 16 25 C 0.07 -1.66 3.42 -26.80 -0.09 -1.76 16 26 H 0.15 -3.34 8.23 -51.35 -0.42 -3.77 16 27 C -0.04 1.07 5.50 -3.98 -0.02 1.05 16 28 H 0.08 -1.32 6.21 -39.17 -0.24 -1.56 16 29 H 0.09 -2.02 3.08 -51.93 -0.16 -2.18 16 30 H 0.08 -1.42 6.64 -47.69 -0.32 -1.74 16 31 H 0.16 -1.53 8.06 -52.49 -0.42 -1.95 16 32 H 0.15 -1.46 8.06 -52.49 -0.42 -1.88 16 33 H 0.13 -1.36 7.96 -51.93 -0.41 -1.77 16 34 H 0.38 -4.57 8.70 45.56 0.40 -4.17 16 35 H 0.10 -2.51 4.46 -52.11 -0.23 -2.74 16 36 H 0.12 -2.80 8.26 -51.13 -0.42 -3.23 16 37 H 0.14 -4.40 8.07 -51.58 -0.42 -4.82 16 38 H 0.14 -4.31 8.19 -51.58 -0.42 -4.73 16 39 H 0.14 -4.60 8.05 -51.52 -0.41 -5.02 16 40 H 0.14 -4.43 8.20 -51.52 -0.42 -4.85 16 41 H 0.08 -2.19 4.21 -51.92 -0.22 -2.41 16 42 H 0.13 -3.45 8.28 -50.95 -0.42 -3.87 16 43 H 0.15 -4.43 8.13 -51.99 -0.42 -4.85 16 44 H 0.15 -4.53 8.12 -51.99 -0.42 -4.96 16 LS Contribution 331.14 15.07 4.99 4.99 Total: 1.00 -36.88 331.14 -8.72 -45.60 By element: Atomic # 1 Polarization: -65.87 SS G_CDS: -5.30 Total: -71.16 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.08 Total: 0.12 kcal Atomic # 7 Polarization: 22.54 SS G_CDS: -0.63 Total: 21.90 kcal Atomic # 8 Polarization: 17.07 SS G_CDS: -0.68 Total: 16.40 kcal Atomic # 14 Polarization: -9.37 SS G_CDS: -4.45 Total: -13.82 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -1.57 Total: -4.04 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.88 -8.72 -45.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868614769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.921 kcal (2) G-P(sol) polarization free energy of solvation -36.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds