Wall clock time and date at job start Mon Mar 23 2020 11:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 119.99953 * 2 1 4 4 O 1.21706 * 120.00183 * 184.86325 * 3 2 1 5 5 C 1.46585 * 120.00086 * 4.85667 * 3 2 1 6 6 C 1.36643 * 125.45893 * 174.80989 * 5 3 2 7 7 C 1.37471 * 113.29899 * 180.02562 * 6 5 3 8 8 C 1.33820 * 115.10234 * 0.26369 * 7 6 5 9 9 C 1.50697 * 124.52868 * 179.72769 * 8 7 6 10 10 O 1.42898 * 109.46642 * 65.00500 * 9 8 7 11 11 Si 1.86295 * 109.47370 * 185.00351 * 9 8 7 12 12 H 1.48507 * 109.46741 * 60.00529 * 11 9 8 13 13 H 1.48502 * 109.47004 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47492 * 300.00551 * 11 9 8 15 15 S 1.70621 * 110.94837 * 359.59091 * 8 7 6 16 16 C 1.46857 * 120.00131 * 179.97438 * 2 1 3 17 17 H 1.09682 * 108.35311 * 172.74126 * 16 2 1 18 18 C 1.52449 * 109.52590 * 53.76237 * 16 2 1 19 19 C 1.52171 * 112.09230 * 191.33636 * 18 16 2 20 20 N 1.45871 * 112.97252 * 48.75342 * 19 18 16 21 21 H 1.02230 * 107.52058 * 185.38963 * 20 19 18 22 22 C 1.45863 * 112.56131 * 67.06744 * 20 19 18 23 23 C 1.52120 * 113.28737 * 287.70090 * 22 20 19 24 24 O 1.41554 * 113.39429 * 319.43426 * 23 22 20 25 25 C 1.41911 * 118.39535 * 41.35661 * 24 23 22 26 26 H 1.10010 * 109.27211 * 190.18367 * 25 24 23 27 27 C 1.46538 * 110.89806 * 302.26101 * 20 19 18 28 28 H 1.08997 * 109.47283 * 54.95981 * 1 2 3 29 29 H 1.08998 * 109.47063 * 174.96161 * 1 2 3 30 30 H 1.09008 * 109.47133 * 294.96256 * 1 2 3 31 31 H 1.07999 * 123.35329 * 359.97438 * 6 5 3 32 32 H 1.07997 * 122.45158 * 180.02562 * 7 6 5 33 33 H 1.09003 * 109.46971 * 305.00949 * 9 8 7 34 34 H 0.96696 * 114.00137 * 60.00375 * 10 9 8 35 35 H 1.08669 * 110.81901 * 315.67371 * 18 16 2 36 36 H 1.10404 * 108.10486 * 72.24494 * 18 16 2 37 37 H 1.09615 * 109.09230 * 170.13281 * 19 18 16 38 38 H 1.09620 * 109.08877 * 287.40112 * 19 18 16 39 39 H 1.09723 * 108.98483 * 49.30361 * 22 20 19 40 40 H 1.09729 * 108.94868 * 166.14874 * 22 20 19 41 41 H 1.09024 * 110.50382 * 84.73177 * 23 22 20 42 42 H 1.10710 * 107.82695 * 199.92532 * 23 22 20 43 43 H 1.08900 * 109.71555 * 183.98234 * 27 20 19 44 44 H 1.08889 * 109.72271 * 304.64788 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3526 1.1692 -0.0894 5 6 1.4099 2.4344 0.1075 6 6 1.9812 3.6706 0.2190 7 6 1.0617 4.6890 0.3042 8 6 -0.2188 4.3019 0.2696 9 6 -1.3967 5.2382 0.3534 10 8 -1.4138 6.0861 -0.7967 11 14 -2.9735 4.2483 0.4187 12 1 -2.9556 3.3672 1.6140 13 1 -4.1342 5.1710 0.5006 14 1 -3.0877 3.4176 -0.8069 15 16 -0.3399 2.6072 0.1141 16 6 2.1993 -1.2718 0.0006 17 1 3.2663 -1.0546 -0.1311 18 6 1.7185 -2.1383 -1.1579 19 6 2.2325 -3.5669 -1.0558 20 7 2.0284 -4.1524 0.2646 21 1 2.4808 -5.0691 0.2680 22 6 0.6177 -4.3557 0.5747 23 6 -0.1291 -3.0604 0.8551 24 8 0.6157 -2.1383 1.6289 25 6 1.9958 -1.9756 1.3412 26 1 2.4635 -1.3738 2.1344 27 6 2.6786 -3.3451 1.3004 28 1 -0.3634 0.5900 -0.8414 29 1 -0.3633 -1.0237 -0.0903 30 1 -0.3634 0.4337 0.9317 31 1 3.0490 3.8316 0.2391 32 1 1.3515 5.7252 0.3964 33 1 -1.3129 5.8479 1.2531 34 1 -1.4868 5.6101 -1.6352 35 1 0.6342 -2.1226 -1.2279 36 1 2.1028 -1.7009 -2.0960 37 1 1.7223 -4.1857 -1.8031 38 1 3.3033 -3.5803 -1.2899 39 1 0.1379 -4.8710 -0.2668 40 1 0.5364 -5.0124 1.4500 41 1 -0.4665 -2.6049 -0.0762 42 1 -1.0486 -3.3142 1.4171 43 1 2.5749 -3.8353 2.2673 44 1 3.7338 -3.2215 1.0616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868614769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:12 Heat of formation + Delta-G solvation = 48.169980 kcal Electronic energy + Delta-G solvation = -27660.179215 eV Core-core repulsion = 23904.044496 eV Total energy + Delta-G solvation = -3756.134718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.76802 -41.14524 -39.41137 -38.49280 -37.46176 -37.01568 -34.39739 -32.91344 -31.77921 -30.38951 -28.49651 -28.01372 -26.31524 -25.32678 -24.39579 -24.00379 -22.31612 -20.65555 -20.24491 -19.84712 -19.29493 -18.32019 -18.28250 -17.64131 -17.51104 -17.26484 -17.14369 -16.66364 -16.56289 -16.34611 -16.01886 -15.79620 -15.22041 -14.75870 -14.67430 -14.48791 -14.32946 -14.15578 -13.93672 -13.85737 -13.75713 -13.52042 -13.36878 -13.30497 -13.04104 -12.74458 -12.53745 -12.30329 -12.24819 -12.13670 -11.79711 -11.51089 -11.28680 -10.87964 -10.63297 -10.14494 -9.82571 -9.53003 -0.74811 0.19758 0.62558 0.78029 1.00970 1.14883 1.31194 1.39403 1.49558 1.85269 1.92850 2.39059 2.64140 2.80069 2.90354 3.02309 3.10259 3.30469 3.35659 3.42342 3.52306 3.65103 3.68657 3.83520 3.96634 4.01842 4.17352 4.19556 4.20830 4.24057 4.28597 4.33341 4.40615 4.46086 4.46973 4.49751 4.61340 4.63088 4.70583 4.74208 4.86741 4.99449 5.03541 5.18826 5.22642 5.87250 6.08477 6.55742 6.76110 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.004048 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.105140 B = 6914.725757 C = 7689.309092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.595 5.595 3 C 0.592 3.408 4 O -0.564 6.564 5 C -0.287 4.287 6 C -0.062 4.062 7 C -0.134 4.134 8 C -0.258 4.258 9 C -0.051 4.051 10 O -0.549 6.549 11 Si 0.911 3.089 12 H -0.226 1.226 13 H -0.249 1.249 14 H -0.215 1.215 15 S 0.262 5.738 16 C 0.100 3.900 17 H 0.110 0.890 18 C -0.164 4.164 19 C 0.003 3.997 20 N -0.355 5.355 21 H 0.461 0.539 22 C -0.036 4.036 23 C 0.015 3.985 24 O -0.373 6.373 25 C 0.068 3.932 26 H 0.118 0.882 27 C -0.021 4.021 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.126 0.874 34 H 0.390 0.610 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.167 0.833 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.156 0.844 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.162 0.838 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.629 -29.042 -1.118 29.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.326 5.326 3 C 0.381 3.619 4 O -0.445 6.445 5 C -0.407 4.407 6 C -0.096 4.096 7 C -0.165 4.165 8 C -0.377 4.377 9 C -0.163 4.163 10 O -0.356 6.356 11 Si 0.730 3.270 12 H -0.149 1.149 13 H -0.173 1.173 14 H -0.137 1.137 15 S 0.532 5.468 16 C -0.003 4.003 17 H 0.128 0.872 18 C -0.202 4.202 19 C -0.119 4.119 20 N 0.063 4.937 21 H 0.304 0.696 22 C -0.158 4.158 23 C -0.061 4.061 24 O -0.291 6.291 25 C 0.009 3.991 26 H 0.136 0.864 27 C -0.144 4.144 28 H 0.088 0.912 29 H 0.150 0.850 30 H 0.092 0.908 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.143 0.857 34 H 0.240 0.760 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.185 0.815 38 H 0.170 0.830 39 H 0.187 0.813 40 H 0.174 0.826 41 H 0.097 0.903 42 H 0.143 0.857 43 H 0.179 0.821 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.049 -29.684 -0.671 29.692 hybrid contribution 1.885 1.892 -0.361 2.695 sum 1.933 -27.792 -1.032 27.878 Atomic orbital electron populations 1.22374 0.78290 1.06223 1.02862 1.47535 1.07520 1.04654 1.72875 1.17092 0.86055 0.83127 0.75623 1.90844 1.14474 1.87200 1.51950 1.24640 0.98511 0.97621 1.19924 1.20855 1.01619 0.90585 0.96550 1.20029 0.91394 1.01350 1.03688 1.25426 1.00357 1.03310 1.08614 1.24644 1.01731 0.97056 0.92848 1.86549 1.96540 1.35857 1.16690 0.86050 0.76922 0.79974 0.84082 1.14897 1.17256 1.13722 1.83116 1.00450 0.96676 1.66564 1.22024 0.99419 0.83081 0.95816 0.87179 1.22241 1.04630 0.93908 0.99407 1.23508 1.09836 0.95281 0.83244 1.44676 1.15342 1.20120 1.13594 0.69629 1.24115 0.79529 1.00879 1.11310 1.23152 0.95765 0.87866 0.99287 1.87535 1.20471 1.61998 1.59137 1.22844 0.82941 0.95693 0.97645 0.86427 1.24262 1.02108 0.92383 0.95645 0.91153 0.85037 0.90830 0.83633 0.83961 0.85658 0.76030 0.88036 0.88484 0.81488 0.83045 0.81284 0.82628 0.90259 0.85691 0.82056 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -1.59 7.07 127.77 0.90 -0.68 16 2 N -0.59 18.52 2.75 -827.09 -2.28 16.25 16 3 C 0.59 -11.73 7.64 86.42 0.66 -11.07 16 4 O -0.56 7.07 16.15 -4.37 -0.07 7.00 16 5 C -0.29 5.10 6.33 24.08 0.15 5.25 16 6 C -0.06 0.88 10.01 21.72 0.22 1.10 16 7 C -0.13 1.94 10.00 21.08 0.21 2.15 16 8 C -0.26 4.45 5.54 24.68 0.14 4.59 16 9 C -0.05 0.88 2.94 71.24 0.21 1.09 16 10 O -0.55 8.01 12.88 -148.98 -1.92 6.09 16 11 Si 0.91 -17.79 26.17 68.60 1.79 -16.00 16 12 H -0.23 4.66 7.11 99.48 0.71 5.37 16 13 H -0.25 3.61 7.11 99.48 0.71 4.32 16 14 H -0.22 4.84 7.11 99.48 0.71 5.55 16 15 S 0.26 -5.86 14.64 -56.49 -0.83 -6.68 16 16 C 0.10 -4.12 2.47 44.67 0.11 -4.01 16 17 H 0.11 -4.06 6.89 -2.02 -0.01 -4.08 16 18 C -0.16 8.23 4.56 30.14 0.14 8.37 16 19 C 0.00 -0.21 5.39 86.22 0.47 0.26 16 20 N -0.35 23.73 0.63 -902.37 -0.56 23.16 16 21 H 0.46 -34.60 8.41 -88.61 -0.75 -35.35 16 22 C -0.04 2.33 5.52 86.21 0.48 2.80 16 23 C 0.02 -0.80 5.33 71.69 0.38 -0.42 16 24 O -0.37 16.57 8.67 -148.73 -1.29 15.28 16 25 C 0.07 -3.16 3.42 30.55 0.10 -3.05 16 26 H 0.12 -4.74 8.23 -1.85 -0.02 -4.76 16 27 C -0.02 1.25 5.50 86.40 0.48 1.72 16 28 H 0.07 -2.32 6.21 -10.50 -0.07 -2.39 16 29 H 0.13 -5.55 3.08 -2.39 -0.01 -5.56 16 30 H 0.07 -2.33 6.64 -5.07 -0.03 -2.37 16 31 H 0.15 -1.93 8.06 -2.91 -0.02 -1.95 16 32 H 0.14 -2.00 8.06 -2.91 -0.02 -2.03 16 33 H 0.13 -2.20 7.96 -2.39 -0.02 -2.22 16 34 H 0.39 -8.47 8.70 -74.06 -0.64 -9.11 16 35 H 0.10 -5.18 4.46 -2.56 -0.01 -5.19 16 36 H 0.10 -4.38 8.26 -1.63 -0.01 -4.40 16 37 H 0.17 -11.21 8.07 -2.06 -0.02 -11.23 16 38 H 0.15 -9.74 8.19 -2.06 -0.02 -9.75 16 39 H 0.17 -11.54 8.05 -2.00 -0.02 -11.55 16 40 H 0.16 -10.24 8.20 -2.00 -0.02 -10.26 16 41 H 0.08 -4.23 4.21 -2.37 -0.01 -4.24 16 42 H 0.13 -6.41 8.28 -1.47 -0.01 -6.43 16 43 H 0.16 -9.94 8.13 -2.44 -0.02 -9.96 16 44 H 0.16 -10.02 8.12 -2.45 -0.02 -10.04 16 Total: 1.00 -84.30 331.14 -0.14 -84.43 By element: Atomic # 1 Polarization: -138.00 SS G_CDS: 0.38 Total: -137.62 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 4.64 Total: 8.09 kcal Atomic # 7 Polarization: 42.25 SS G_CDS: -2.84 Total: 39.41 kcal Atomic # 8 Polarization: 31.65 SS G_CDS: -3.28 Total: 28.37 kcal Atomic # 14 Polarization: -17.79 SS G_CDS: 1.79 Total: -16.00 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -0.83 Total: -6.68 kcal Total: -84.30 -0.14 -84.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868614769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.604 kcal (2) G-P(sol) polarization free energy of solvation -84.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds