Wall clock time and date at job start Mon Mar 23 2020 11:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00291 * 2 1 4 4 O 1.21634 * 119.99845 * 182.96899 * 3 2 1 5 5 C 1.47187 * 120.00017 * 2.97092 * 3 2 1 6 6 C 1.36005 * 123.46064 * 147.73510 * 5 3 2 7 7 S 1.70444 * 110.81680 * 180.22287 * 6 5 3 8 8 C 1.75504 * 92.44519 * 359.68223 * 7 6 5 9 9 C 1.50699 * 124.71425 * 180.02562 * 8 7 6 10 10 O 1.42893 * 109.47649 * 245.27497 * 9 8 7 11 11 Si 1.86306 * 109.47023 * 5.27653 * 9 8 7 12 12 H 1.48503 * 109.47290 * 59.99560 * 11 9 8 13 13 H 1.48497 * 109.47069 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46774 * 299.99561 * 11 9 8 15 15 C 1.32771 * 110.57640 * 0.32100 * 8 7 6 16 16 C 1.46829 * 119.99786 * 180.02562 * 2 1 3 17 17 H 1.09956 * 107.91382 * 173.74686 * 16 2 1 18 18 C 1.52309 * 109.64768 * 292.02066 * 16 2 1 19 19 C 1.52292 * 112.49498 * 76.32759 * 18 16 2 20 20 N 1.46023 * 112.06716 * 47.84268 * 19 18 16 21 21 C 1.46045 * 113.49828 * 68.00677 * 20 19 18 22 22 C 1.52361 * 112.33974 * 286.27601 * 21 20 19 23 23 O 1.41646 * 113.15972 * 318.91679 * 22 21 20 24 24 C 1.42061 * 118.26692 * 42.90913 * 23 22 21 25 25 H 1.09882 * 109.08988 * 188.75407 * 24 23 22 26 26 C 1.46762 * 111.52356 * 300.93701 * 20 19 18 27 27 H 1.09000 * 109.47490 * 87.11179 * 1 2 3 28 28 H 1.09004 * 109.47472 * 207.11570 * 1 2 3 29 29 H 1.09000 * 109.46907 * 327.11406 * 1 2 3 30 30 H 1.08002 * 124.59185 * 359.95610 * 6 5 3 31 31 H 1.08998 * 109.47385 * 125.27162 * 9 8 7 32 32 H 0.96706 * 114.00443 * 60.00105 * 10 9 8 33 33 H 1.07993 * 123.45914 * 179.76113 * 15 8 7 34 34 H 1.08821 * 110.62623 * 200.39868 * 18 16 2 35 35 H 1.10346 * 108.20705 * 316.90802 * 18 16 2 36 36 H 1.09560 * 109.28010 * 286.48195 * 19 18 16 37 37 H 1.09626 * 109.11693 * 168.96058 * 19 18 16 38 38 H 1.09662 * 109.30569 * 47.54958 * 21 20 19 39 39 H 1.09678 * 109.27283 * 165.04096 * 21 20 19 40 40 H 1.08988 * 110.36393 * 83.69653 * 22 21 20 41 41 H 1.10544 * 107.91914 * 199.32044 * 22 21 20 42 42 H 1.08731 * 110.20315 * 305.70912 * 26 20 19 43 43 H 1.09016 * 109.81510 * 184.69324 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3540 1.1678 -0.0546 5 6 1.4045 2.4410 0.0661 6 6 1.8879 3.5543 0.6798 7 16 0.7735 4.8392 0.5690 8 6 -0.3739 3.8655 -0.3340 9 6 -1.7109 4.3536 -0.8294 10 8 -2.7550 3.6416 -0.1624 11 14 -1.8770 6.1751 -0.4754 12 1 -0.7920 6.9151 -1.1685 13 1 -3.1942 6.6562 -0.9641 14 1 -1.7771 6.4060 0.9881 15 6 0.0967 2.6372 -0.5146 16 6 2.1991 -1.2716 -0.0006 17 1 3.2689 -1.0445 -0.1144 18 6 1.9893 -1.9846 1.3289 19 6 0.6185 -2.6406 1.4284 20 7 0.2966 -3.4220 0.2376 21 6 1.1280 -4.6122 0.0797 22 6 2.5455 -4.2737 -0.3647 23 8 2.5927 -3.2560 -1.3487 24 6 1.7520 -2.1225 -1.1853 25 1 1.7905 -1.5120 -2.0980 26 6 0.3088 -2.5904 -0.9717 27 1 -0.3634 0.0518 -1.0263 28 1 -0.3634 -0.9147 0.4684 29 1 -0.3633 0.8630 0.5580 30 1 2.8462 3.6147 1.1743 31 1 -1.7843 4.1841 -1.9036 32 1 -2.7512 3.7469 0.7989 33 1 -0.4429 1.8643 -1.0415 34 1 2.7752 -2.7179 1.4988 35 1 2.0728 -1.2382 2.1373 36 1 -0.1434 -1.8664 1.5713 37 1 0.5970 -3.2957 2.3071 38 1 1.1701 -5.1540 1.0322 39 1 0.6693 -5.2787 -0.6607 40 1 3.1596 -4.0084 0.4958 41 1 2.9950 -5.1880 -0.7937 42 1 -0.3492 -1.7341 -0.8452 43 1 -0.0152 -3.1805 -1.8292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636268655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:47 Heat of formation + Delta-G solvation = -35.331343 kcal Electronic energy + Delta-G solvation = -27391.502366 eV Core-core repulsion = 23645.402498 eV Total energy + Delta-G solvation = -3746.099868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.55010 -40.78968 -38.90315 -37.44106 -37.20567 -36.34350 -33.16522 -32.27851 -31.79475 -30.03557 -28.27272 -27.03728 -26.02427 -25.20672 -23.85844 -23.21509 -21.60900 -20.73238 -19.93893 -19.01909 -18.19196 -17.71889 -17.63687 -17.09402 -17.01913 -16.68492 -16.41319 -16.25939 -16.19998 -15.96894 -15.64051 -15.17133 -14.93553 -14.56444 -14.46572 -14.33526 -13.96488 -13.79897 -13.69749 -13.50800 -13.27440 -13.14017 -12.82738 -12.68666 -12.48624 -12.33260 -12.29161 -12.14890 -11.85323 -11.82137 -11.54247 -11.10706 -10.71007 -10.55774 -10.08430 -9.74762 -9.54672 -9.11855 -0.32999 0.26691 0.58070 0.84532 0.98796 1.27968 1.39716 1.78093 1.78555 2.10320 2.66469 2.80661 3.20419 3.37218 3.47725 3.51738 3.61889 3.72063 3.78069 3.81586 3.87883 3.93734 4.01110 4.12173 4.17144 4.21219 4.30981 4.37621 4.39321 4.39939 4.48285 4.59982 4.68348 4.70639 4.75965 4.79726 4.85798 4.87186 4.94720 5.04621 5.07873 5.37673 5.86505 5.98580 6.19116 6.30784 6.32542 7.07855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.599 5.599 3 C 0.583 3.417 4 O -0.531 6.531 5 C -0.163 4.163 6 C -0.171 4.171 7 S 0.179 5.821 8 C -0.241 4.241 9 C -0.037 4.037 10 O -0.532 6.532 11 Si 0.891 3.109 12 H -0.233 1.233 13 H -0.226 1.226 14 H -0.232 1.232 15 C -0.082 4.082 16 C 0.120 3.880 17 H 0.108 0.892 18 C -0.170 4.170 19 C 0.051 3.949 20 N -0.537 5.537 21 C 0.027 3.973 22 C 0.023 3.977 23 O -0.364 6.364 24 C 0.056 3.944 25 H 0.109 0.891 26 C 0.004 3.996 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.176 0.824 31 H 0.128 0.872 32 H 0.378 0.622 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 0.411 2.052 4.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.334 5.334 3 C 0.370 3.630 4 O -0.408 6.408 5 C -0.180 4.180 6 C -0.309 4.309 7 S 0.445 5.555 8 C -0.358 4.358 9 C -0.151 4.151 10 O -0.337 6.337 11 Si 0.710 3.290 12 H -0.156 1.156 13 H -0.148 1.148 14 H -0.155 1.155 15 C -0.112 4.112 16 C 0.016 3.984 17 H 0.126 0.874 18 C -0.210 4.210 19 C -0.077 4.077 20 N -0.259 5.259 21 C -0.101 4.101 22 C -0.055 4.055 23 O -0.281 6.281 24 C -0.004 4.004 25 H 0.127 0.873 26 C -0.124 4.124 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.193 0.807 31 H 0.145 0.855 32 H 0.225 0.775 33 H 0.178 0.822 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.127 0.873 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.345 2.415 2.025 5.368 hybrid contribution 1.125 -1.577 0.173 1.945 sum -3.221 0.838 2.198 3.988 Atomic orbital electron populations 1.22920 0.79789 1.04966 1.02220 1.47660 1.06917 1.05015 1.73791 1.17697 0.86644 0.82819 0.75795 1.90829 1.13393 1.87022 1.49588 1.20101 0.96271 0.94868 1.06772 1.25601 1.04934 0.96645 1.03748 1.83309 1.07584 1.13529 1.51033 1.24797 1.02834 0.98675 1.09499 1.24336 0.82416 1.07611 1.00690 1.86545 1.49409 1.73475 1.24315 0.86301 0.84450 0.74905 0.83312 1.15577 1.14775 1.15526 1.21494 0.93033 0.96908 0.99738 1.21484 0.99131 0.83070 0.94688 0.87368 1.22505 0.99672 1.01359 0.97493 1.22140 0.95032 0.97477 0.93015 1.60855 1.53751 1.08272 1.02996 1.22489 0.91396 0.92846 1.03368 1.23024 0.97552 0.91561 0.93338 1.87383 1.63823 1.29268 1.47670 1.22744 0.91842 0.87098 0.98702 0.87281 1.23274 0.96054 0.99429 0.93613 0.91738 0.88573 0.89749 0.80692 0.85457 0.77455 0.82185 0.90038 0.90730 0.89628 0.90085 0.89532 0.89701 0.92825 0.88900 0.87306 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.11 6.64 59.85 0.40 0.29 16 2 N -0.60 -0.26 2.74 -175.30 -0.48 -0.74 16 3 C 0.58 1.78 7.52 -12.63 -0.09 1.69 16 4 O -0.53 -3.70 16.21 5.25 0.09 -3.62 16 5 C -0.16 -0.20 5.40 -104.63 -0.57 -0.76 16 6 C -0.17 -0.12 10.66 29.93 0.32 0.20 16 7 S 0.18 -0.14 20.20 -107.50 -2.17 -2.32 16 8 C -0.24 0.30 5.65 -36.18 -0.20 0.09 16 9 C -0.04 0.08 2.94 36.00 0.11 0.19 16 10 O -0.53 1.09 12.88 -35.23 -0.45 0.64 16 11 Si 0.89 -1.66 26.21 -169.99 -4.45 -6.11 16 12 H -0.23 0.23 7.11 56.52 0.40 0.63 16 13 H -0.23 0.18 7.11 56.52 0.40 0.58 16 14 H -0.23 0.42 7.11 56.52 0.40 0.82 16 15 C -0.08 0.07 7.84 -39.02 -0.31 -0.24 16 16 C 0.12 0.13 2.61 -68.33 -0.18 -0.05 16 17 H 0.11 0.44 6.86 -51.38 -0.35 0.09 16 18 C -0.17 0.06 4.72 -27.45 -0.13 -0.07 16 19 C 0.05 -0.07 5.27 -4.66 -0.02 -0.10 16 20 N -0.54 0.36 4.91 -235.88 -1.16 -0.80 16 21 C 0.03 -0.03 5.89 -4.61 -0.03 -0.05 16 22 C 0.02 0.00 6.08 36.83 0.22 0.22 16 23 O -0.36 -0.87 10.34 -35.19 -0.36 -1.24 16 24 C 0.06 0.04 3.29 -26.85 -0.09 -0.05 16 25 H 0.11 0.11 8.22 -51.43 -0.42 -0.31 16 26 C 0.00 0.00 5.58 -3.79 -0.02 -0.02 16 27 H 0.06 -0.23 6.45 -51.93 -0.33 -0.56 16 28 H 0.10 -0.29 2.71 -51.93 -0.14 -0.43 16 29 H 0.08 -0.23 5.53 -51.93 -0.29 -0.52 16 30 H 0.18 0.06 8.06 -52.49 -0.42 -0.36 16 31 H 0.13 -0.40 7.96 -51.93 -0.41 -0.81 16 32 H 0.38 -1.93 8.70 45.56 0.40 -1.53 16 33 H 0.16 -0.37 5.45 -52.49 -0.29 -0.65 16 34 H 0.08 -0.01 5.74 -52.03 -0.30 -0.31 16 35 H 0.07 0.01 8.23 -51.16 -0.42 -0.41 16 36 H 0.09 -0.18 5.58 -51.61 -0.29 -0.47 16 37 H 0.08 -0.15 8.10 -51.57 -0.42 -0.57 16 38 H 0.09 -0.18 8.07 -51.55 -0.42 -0.59 16 39 H 0.08 -0.08 8.20 -51.54 -0.42 -0.51 16 40 H 0.05 -0.01 5.89 -51.94 -0.31 -0.32 16 41 H 0.09 -0.08 8.27 -51.04 -0.42 -0.51 16 42 H 0.11 -0.25 3.65 -52.08 -0.19 -0.44 16 43 H 0.09 -0.05 8.14 -51.92 -0.42 -0.47 16 LS Contribution 324.71 15.07 4.89 4.89 Total: 0.00 -6.24 324.71 -9.36 -15.60 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: -4.66 Total: -7.65 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -0.59 Total: 1.34 kcal Atomic # 7 Polarization: 0.11 SS G_CDS: -1.64 Total: -1.53 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.73 Total: -4.22 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -4.45 Total: -6.11 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.17 Total: -2.32 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -6.24 -9.36 -15.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636268655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.734 kcal (2) G-P(sol) polarization free energy of solvation -6.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds