Wall clock time and date at job start Mon Mar 23 2020 11:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00291 * 2 1 4 4 O 1.21634 * 119.99845 * 182.96899 * 3 2 1 5 5 C 1.47187 * 120.00017 * 2.97092 * 3 2 1 6 6 C 1.36005 * 123.46064 * 147.73510 * 5 3 2 7 7 S 1.70444 * 110.81680 * 180.22287 * 6 5 3 8 8 C 1.75504 * 92.44519 * 359.68223 * 7 6 5 9 9 C 1.50699 * 124.71425 * 180.02562 * 8 7 6 10 10 O 1.42893 * 109.47649 * 245.27497 * 9 8 7 11 11 Si 1.86306 * 109.47023 * 5.27653 * 9 8 7 12 12 H 1.48503 * 109.47290 * 59.99560 * 11 9 8 13 13 H 1.48497 * 109.47069 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46774 * 299.99561 * 11 9 8 15 15 C 1.32771 * 110.57640 * 0.32100 * 8 7 6 16 16 C 1.46829 * 119.99786 * 180.02562 * 2 1 3 17 17 H 1.09956 * 107.91382 * 173.74686 * 16 2 1 18 18 C 1.52309 * 109.64768 * 292.02066 * 16 2 1 19 19 C 1.52292 * 112.49498 * 76.32759 * 18 16 2 20 20 N 1.46023 * 112.06716 * 47.84268 * 19 18 16 21 21 C 1.46045 * 113.49828 * 68.00677 * 20 19 18 22 22 C 1.52361 * 112.33974 * 286.27601 * 21 20 19 23 23 O 1.41646 * 113.15972 * 318.91679 * 22 21 20 24 24 C 1.42061 * 118.26692 * 42.90913 * 23 22 21 25 25 H 1.09882 * 109.08988 * 188.75407 * 24 23 22 26 26 C 1.46762 * 111.52356 * 300.93701 * 20 19 18 27 27 H 1.09000 * 109.47490 * 87.11179 * 1 2 3 28 28 H 1.09004 * 109.47472 * 207.11570 * 1 2 3 29 29 H 1.09000 * 109.46907 * 327.11406 * 1 2 3 30 30 H 1.08002 * 124.59185 * 359.95610 * 6 5 3 31 31 H 1.08998 * 109.47385 * 125.27162 * 9 8 7 32 32 H 0.96706 * 114.00443 * 60.00105 * 10 9 8 33 33 H 1.07993 * 123.45914 * 179.76113 * 15 8 7 34 34 H 1.08821 * 110.62623 * 200.39868 * 18 16 2 35 35 H 1.10346 * 108.20705 * 316.90802 * 18 16 2 36 36 H 1.09560 * 109.28010 * 286.48195 * 19 18 16 37 37 H 1.09626 * 109.11693 * 168.96058 * 19 18 16 38 38 H 1.09662 * 109.30569 * 47.54958 * 21 20 19 39 39 H 1.09678 * 109.27283 * 165.04096 * 21 20 19 40 40 H 1.08988 * 110.36393 * 83.69653 * 22 21 20 41 41 H 1.10544 * 107.91914 * 199.32044 * 22 21 20 42 42 H 1.08731 * 110.20315 * 305.70912 * 26 20 19 43 43 H 1.09016 * 109.81510 * 184.69324 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3540 1.1678 -0.0546 5 6 1.4045 2.4410 0.0661 6 6 1.8879 3.5543 0.6798 7 16 0.7735 4.8392 0.5690 8 6 -0.3739 3.8655 -0.3340 9 6 -1.7109 4.3536 -0.8294 10 8 -2.7550 3.6416 -0.1624 11 14 -1.8770 6.1751 -0.4754 12 1 -0.7920 6.9151 -1.1685 13 1 -3.1942 6.6562 -0.9641 14 1 -1.7771 6.4060 0.9881 15 6 0.0967 2.6372 -0.5146 16 6 2.1991 -1.2716 -0.0006 17 1 3.2689 -1.0445 -0.1144 18 6 1.9893 -1.9846 1.3289 19 6 0.6185 -2.6406 1.4284 20 7 0.2966 -3.4220 0.2376 21 6 1.1280 -4.6122 0.0797 22 6 2.5455 -4.2737 -0.3647 23 8 2.5927 -3.2560 -1.3487 24 6 1.7520 -2.1225 -1.1853 25 1 1.7905 -1.5120 -2.0980 26 6 0.3088 -2.5904 -0.9717 27 1 -0.3634 0.0518 -1.0263 28 1 -0.3634 -0.9147 0.4684 29 1 -0.3633 0.8630 0.5580 30 1 2.8462 3.6147 1.1743 31 1 -1.7843 4.1841 -1.9036 32 1 -2.7512 3.7469 0.7989 33 1 -0.4429 1.8643 -1.0415 34 1 2.7752 -2.7179 1.4988 35 1 2.0728 -1.2382 2.1373 36 1 -0.1434 -1.8664 1.5713 37 1 0.5970 -3.2957 2.3071 38 1 1.1701 -5.1540 1.0322 39 1 0.6693 -5.2787 -0.6607 40 1 3.1596 -4.0084 0.4958 41 1 2.9950 -5.1880 -0.7937 42 1 -0.3492 -1.7341 -0.8452 43 1 -0.0152 -3.1805 -1.8292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001636268655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:46 Heat of formation + Delta-G solvation = -36.136054 kcal Electronic energy + Delta-G solvation = -27391.537261 eV Core-core repulsion = 23645.402498 eV Total energy + Delta-G solvation = -3746.134763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.58591 -40.89168 -38.84218 -37.53809 -37.13960 -36.38775 -33.17897 -32.26122 -31.73585 -30.01141 -28.25242 -26.96024 -26.05002 -25.17401 -23.82759 -23.21331 -21.54476 -20.73487 -20.00027 -19.00823 -18.09491 -17.75121 -17.62536 -17.12950 -17.08154 -16.68165 -16.36760 -16.21778 -16.14758 -15.93058 -15.58992 -15.16136 -14.94100 -14.50780 -14.47592 -14.29552 -13.93170 -13.79676 -13.65618 -13.49569 -13.23951 -13.11892 -12.79328 -12.59920 -12.38694 -12.28882 -12.20845 -12.15599 -11.84581 -11.80021 -11.47028 -11.23195 -10.65014 -10.50093 -10.06603 -9.79963 -9.51543 -9.10186 -0.34443 0.30792 0.64039 0.83978 1.13233 1.41874 1.51037 1.72036 1.92169 1.98270 2.66981 2.84653 3.28019 3.40699 3.50370 3.62361 3.65517 3.72777 3.81205 3.88080 3.94492 4.00625 4.03876 4.12005 4.25953 4.27921 4.39238 4.41877 4.48716 4.59518 4.61268 4.61416 4.71442 4.75602 4.78734 4.83046 4.88278 4.92054 4.99138 5.13003 5.15289 5.33128 5.92759 6.05573 6.11043 6.27144 6.69003 6.91199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.590 5.590 3 C 0.577 3.423 4 O -0.584 6.584 5 C -0.174 4.174 6 C -0.185 4.185 7 S 0.196 5.804 8 C -0.237 4.237 9 C -0.027 4.027 10 O -0.540 6.540 11 Si 0.907 3.093 12 H -0.247 1.247 13 H -0.240 1.240 14 H -0.232 1.232 15 C -0.081 4.081 16 C 0.124 3.876 17 H 0.069 0.931 18 C -0.163 4.163 19 C 0.054 3.946 20 N -0.538 5.538 21 C 0.028 3.972 22 C 0.019 3.981 23 O -0.390 6.390 24 C 0.057 3.943 25 H 0.101 0.899 26 C 0.010 3.990 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.170 0.830 31 H 0.140 0.860 32 H 0.391 0.609 33 H 0.178 0.822 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 0.091 2.285 7.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.323 5.323 3 C 0.365 3.635 4 O -0.465 6.465 5 C -0.192 4.192 6 C -0.324 4.324 7 S 0.463 5.537 8 C -0.353 4.353 9 C -0.141 4.141 10 O -0.347 6.347 11 Si 0.728 3.272 12 H -0.170 1.170 13 H -0.163 1.163 14 H -0.155 1.155 15 C -0.109 4.109 16 C 0.020 3.980 17 H 0.088 0.912 18 C -0.203 4.203 19 C -0.074 4.074 20 N -0.260 5.260 21 C -0.100 4.100 22 C -0.059 4.059 23 O -0.307 6.307 24 C -0.003 4.003 25 H 0.119 0.881 26 C -0.118 4.118 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.187 0.813 31 H 0.158 0.842 32 H 0.241 0.759 33 H 0.195 0.805 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.118 0.882 42 H 0.144 0.856 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.606 2.082 2.278 7.292 hybrid contribution 1.823 -1.448 0.110 2.331 sum -4.783 0.634 2.388 5.384 Atomic orbital electron populations 1.23157 0.77575 1.05907 1.03725 1.47684 1.08169 1.04071 1.72344 1.18076 0.86196 0.84020 0.75181 1.90796 1.15630 1.87786 1.52334 1.20109 0.97220 0.94066 1.07783 1.25706 1.05301 0.97383 1.03982 1.83247 1.07069 1.12731 1.50621 1.24969 1.03077 0.98367 1.08930 1.24269 0.81694 1.06725 1.01397 1.86524 1.49190 1.73344 1.25658 0.86083 0.82977 0.75185 0.82945 1.17020 1.16334 1.15507 1.21557 0.92090 0.97569 0.99704 1.21358 0.97191 0.83568 0.95878 0.91243 1.22444 1.00669 1.00971 0.96204 1.22178 0.94188 0.97861 0.93128 1.60915 1.53586 1.08361 1.03128 1.22512 0.90479 0.92889 1.04106 1.23149 0.98565 0.91201 0.92959 1.87336 1.64632 1.30046 1.48718 1.22747 0.92932 0.86662 0.97994 0.88150 1.23298 0.94770 1.00000 0.93713 0.89864 0.87606 0.88819 0.81287 0.84221 0.75918 0.80460 0.90508 0.91337 0.88379 0.89077 0.88189 0.89496 0.93041 0.88239 0.85579 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.23 6.64 127.77 0.85 0.62 16 2 N -0.59 -0.97 2.74 -826.78 -2.27 -3.24 16 3 C 0.58 4.55 7.52 86.59 0.65 5.20 16 4 O -0.58 -10.08 16.21 -4.14 -0.07 -10.14 16 5 C -0.17 -0.54 5.40 -19.87 -0.11 -0.64 16 6 C -0.19 -0.46 10.66 67.30 0.72 0.26 16 7 S 0.20 -0.35 20.20 -56.49 -1.14 -1.49 16 8 C -0.24 0.84 5.65 24.51 0.14 0.98 16 9 C -0.03 0.16 2.94 71.24 0.21 0.37 16 10 O -0.54 3.31 12.88 -148.98 -1.92 1.39 16 11 Si 0.91 -3.96 26.21 68.60 1.80 -2.16 16 12 H -0.25 0.52 7.11 99.48 0.71 1.22 16 13 H -0.24 0.43 7.11 99.48 0.71 1.14 16 14 H -0.23 1.03 7.11 99.48 0.71 1.74 16 15 C -0.08 0.20 7.84 22.67 0.18 0.38 16 16 C 0.12 0.47 2.61 44.55 0.12 0.58 16 17 H 0.07 0.82 6.86 -1.88 -0.01 0.80 16 18 C -0.16 -0.01 4.72 30.13 0.14 0.13 16 19 C 0.05 -0.21 5.27 86.23 0.45 0.24 16 20 N -0.54 1.34 4.91 -900.19 -4.42 -3.08 16 21 C 0.03 -0.07 5.89 86.25 0.51 0.43 16 22 C 0.02 0.01 6.08 71.77 0.44 0.45 16 23 O -0.39 -2.39 10.34 -148.83 -1.54 -3.93 16 24 C 0.06 0.14 3.29 30.52 0.10 0.24 16 25 H 0.10 0.35 8.22 -1.92 -0.02 0.34 16 26 C 0.01 -0.02 5.58 86.40 0.48 0.46 16 27 H 0.08 -0.77 6.45 -2.39 -0.02 -0.79 16 28 H 0.11 -0.84 2.71 -2.38 -0.01 -0.84 16 29 H 0.09 -0.68 5.53 -2.39 -0.01 -0.69 16 30 H 0.17 0.50 8.06 -2.91 -0.02 0.47 16 31 H 0.14 -1.16 7.96 -2.39 -0.02 -1.18 16 32 H 0.39 -4.77 8.70 -74.05 -0.64 -5.41 16 33 H 0.18 -1.16 5.45 -2.91 -0.02 -1.18 16 34 H 0.08 0.08 5.74 -2.48 -0.01 0.06 16 35 H 0.07 0.09 8.23 -1.66 -0.01 0.08 16 36 H 0.10 -0.62 5.58 -2.09 -0.01 -0.63 16 37 H 0.09 -0.48 8.10 -2.05 -0.02 -0.50 16 38 H 0.10 -0.53 8.07 -2.03 -0.02 -0.54 16 39 H 0.09 -0.25 8.20 -2.03 -0.02 -0.26 16 40 H 0.05 0.03 5.89 -2.39 -0.01 0.02 16 41 H 0.10 -0.13 8.27 -1.56 -0.01 -0.14 16 42 H 0.13 -0.81 3.65 -2.53 -0.01 -0.82 16 43 H 0.09 -0.17 8.14 -2.38 -0.02 -0.19 16 Total: 0.00 -16.76 324.71 -3.47 -20.23 By element: Atomic # 1 Polarization: -8.51 SS G_CDS: 1.21 Total: -7.30 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 4.87 Total: 9.71 kcal Atomic # 7 Polarization: 0.37 SS G_CDS: -6.69 Total: -6.32 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -3.53 Total: -12.67 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 1.80 Total: -2.16 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.14 Total: -1.49 kcal Total: -16.76 -3.47 -20.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636268655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.906 kcal (2) G-P(sol) polarization free energy of solvation -16.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds