Wall clock time and date at job start Mon Mar 23 2020 11:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 119.99911 * 2 1 4 4 O 1.21632 * 119.99688 * 183.95223 * 3 2 1 5 5 C 1.47187 * 119.99801 * 3.94735 * 3 2 1 6 6 C 1.36005 * 123.46409 * 351.13456 * 5 3 2 7 7 S 1.70446 * 110.81909 * 179.89336 * 6 5 3 8 8 C 1.75511 * 92.44236 * 0.31973 * 7 6 5 9 9 C 1.50702 * 124.70846 * 179.78158 * 8 7 6 10 10 O 1.42905 * 109.47178 * 245.04226 * 9 8 7 11 11 Si 1.86296 * 109.47336 * 5.04204 * 9 8 7 12 12 H 1.48502 * 109.47188 * 60.00029 * 11 9 8 13 13 H 1.48505 * 109.47226 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47352 * 299.99907 * 11 9 8 15 15 C 1.32768 * 110.57557 * 359.82299 * 8 7 6 16 16 C 1.46834 * 120.00446 * 179.97438 * 2 1 3 17 17 H 1.09991 * 107.92614 * 182.88097 * 16 2 1 18 18 C 1.52322 * 109.70949 * 301.24439 * 16 2 1 19 19 C 1.52106 * 112.48689 * 76.61399 * 18 16 2 20 20 N 1.45934 * 112.75550 * 48.53656 * 19 18 16 21 21 H 1.02198 * 107.52715 * 184.37261 * 20 19 18 22 22 C 1.45814 * 112.54948 * 65.95807 * 20 19 18 23 23 C 1.52097 * 113.53306 * 286.75515 * 22 20 19 24 24 O 1.41701 * 113.26442 * 319.31423 * 23 22 20 25 25 C 1.42194 * 117.57857 * 43.18543 * 24 23 22 26 26 H 1.10013 * 109.07985 * 188.22951 * 25 24 23 27 27 C 1.46530 * 110.55890 * 301.10253 * 20 19 18 28 28 H 1.09003 * 109.46944 * 185.03199 * 1 2 3 29 29 H 1.09001 * 109.47353 * 305.03131 * 1 2 3 30 30 H 1.09000 * 109.46934 * 65.03207 * 1 2 3 31 31 H 1.08001 * 124.58854 * 0.02562 * 6 5 3 32 32 H 1.08996 * 109.46904 * 125.04312 * 9 8 7 33 33 H 0.96702 * 113.99549 * 59.99729 * 10 9 8 34 34 H 1.07993 * 123.45588 * 179.97438 * 15 8 7 35 35 H 1.10449 * 108.12879 * 317.30265 * 18 16 2 36 36 H 1.08794 * 110.78966 * 200.98708 * 18 16 2 37 37 H 1.09574 * 109.25270 * 287.16722 * 19 18 16 38 38 H 1.09621 * 109.14270 * 169.77621 * 19 18 16 39 39 H 1.09752 * 108.94786 * 165.04488 * 22 20 19 40 40 H 1.09780 * 108.92265 * 48.37479 * 22 20 19 41 41 H 1.08977 * 110.61258 * 84.42056 * 23 22 20 42 42 H 1.10671 * 107.88950 * 199.87401 * 23 22 20 43 43 H 1.09046 * 109.50287 * 184.32986 * 27 20 19 44 44 H 1.08785 * 109.86072 * 304.64339 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3530 1.1685 -0.0726 5 6 1.4055 2.4404 0.0878 6 6 0.0517 2.5339 -0.0034 7 16 -0.4549 4.1547 0.1434 8 6 1.1928 4.7320 0.3233 9 6 1.5805 6.1765 0.5079 10 8 2.3371 6.6149 -0.6224 11 14 0.0432 7.2167 0.6674 12 1 -0.7430 6.7613 1.8420 13 1 0.4254 8.6403 0.8487 14 1 -0.7781 7.0780 -0.5620 15 6 2.0501 3.7195 0.2732 16 6 2.1992 -1.2716 0.0006 17 1 3.2736 -1.0420 0.0531 18 6 1.8120 -2.0878 1.2269 19 6 0.4494 -2.7476 1.0801 20 7 0.2960 -3.4496 -0.1900 21 1 -0.6641 -3.7967 -0.2359 22 6 1.1877 -4.5976 -0.3056 23 6 2.6424 -4.2162 -0.5330 24 8 2.8031 -3.1349 -1.4346 25 6 1.9232 -2.0264 -1.2966 26 1 2.0693 -1.3434 -2.1466 27 6 0.4775 -2.5265 -1.3134 28 1 -0.3633 -1.0237 0.0901 29 1 -0.3634 0.5899 0.8415 30 1 -0.3633 0.4338 -0.9316 31 1 -0.6125 1.6945 -0.1470 32 1 2.1834 6.2784 1.4102 33 1 1.8617 6.5521 -1.4622 34 1 3.1196 3.8400 0.3617 35 1 1.7716 -1.4060 2.0949 36 1 2.5745 -2.8302 1.4532 37 1 -0.3324 -1.9843 1.1626 38 1 0.3046 -3.4600 1.9006 39 1 0.8492 -5.2295 -1.1367 40 1 1.1151 -5.1984 0.6103 41 1 3.1368 -4.0068 0.4153 42 1 3.1618 -5.0958 -0.9589 43 1 0.2839 -3.0503 -2.2500 44 1 -0.2090 -1.6881 -1.2174 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636268655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:52:54 Heat of formation + Delta-G solvation = 111.690802 kcal Electronic energy + Delta-G solvation = -27542.568781 eV Core-core repulsion = 23789.188532 eV Total energy + Delta-G solvation = -3753.380249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.21920 -42.63770 -40.45639 -39.87031 -38.97586 -38.18448 -35.74420 -35.15115 -33.29314 -32.15637 -30.95215 -28.69117 -27.79704 -27.62542 -26.60973 -25.53134 -23.47002 -22.74316 -22.10377 -21.59486 -20.62606 -20.05961 -19.77327 -19.47173 -19.07856 -18.86470 -18.75866 -18.33253 -18.02401 -17.81192 -17.14649 -17.13296 -16.77956 -16.68740 -16.33674 -16.29507 -15.97577 -15.76522 -15.70466 -15.41609 -15.32742 -15.11793 -14.78889 -14.66245 -14.51058 -14.32525 -13.91943 -13.62298 -13.46744 -13.15335 -12.98576 -12.85850 -12.67119 -12.06725 -11.52462 -11.40277 -11.00178 -10.55469 -1.73148 -1.45897 -0.67201 -0.30670 -0.20637 -0.07355 0.19675 0.27907 0.32705 0.37302 0.55651 0.59705 0.69157 0.75586 0.97191 1.11455 1.14512 1.21761 1.32515 1.44505 1.52812 1.55388 1.63967 1.81232 1.83554 1.96917 2.11259 2.18197 2.32366 2.38907 2.40089 2.47490 2.59075 2.64143 2.68059 2.70930 2.87288 2.98653 3.03835 3.20692 3.58954 3.61397 3.69358 4.04114 4.07594 4.22183 4.61089 5.68010 5.70364 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.030465 B = 0.003336 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.864548 B = 8390.984282 C = 8851.279872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.614 5.614 3 C 0.587 3.413 4 O -0.509 6.509 5 C -0.160 4.160 6 C -0.241 4.241 7 S 0.192 5.808 8 C -0.233 4.233 9 C -0.042 4.042 10 O -0.529 6.529 11 Si 0.890 3.110 12 H -0.233 1.233 13 H -0.220 1.220 14 H -0.232 1.232 15 C -0.054 4.054 16 C 0.106 3.894 17 H 0.140 0.860 18 C -0.162 4.162 19 C -0.026 4.026 20 N -0.372 5.372 21 H 0.432 0.568 22 C -0.045 4.045 23 C 0.033 3.967 24 O -0.340 6.340 25 C 0.077 3.923 26 H 0.150 0.850 27 C -0.062 4.062 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.198 0.802 32 H 0.130 0.870 33 H 0.379 0.621 34 H 0.160 0.840 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.789 -21.642 0.603 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.351 5.351 3 C 0.376 3.624 4 O -0.384 6.384 5 C -0.179 4.179 6 C -0.378 4.378 7 S 0.459 5.541 8 C -0.350 4.350 9 C -0.155 4.155 10 O -0.334 6.334 11 Si 0.709 3.291 12 H -0.156 1.156 13 H -0.142 1.142 14 H -0.155 1.155 15 C -0.082 4.082 16 C 0.002 3.998 17 H 0.158 0.842 18 C -0.200 4.200 19 C -0.146 4.146 20 N 0.050 4.950 21 H 0.269 0.731 22 C -0.167 4.167 23 C -0.044 4.044 24 O -0.256 6.256 25 C 0.017 3.983 26 H 0.168 0.832 27 C -0.183 4.183 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.214 0.786 32 H 0.147 0.853 33 H 0.226 0.774 34 H 0.177 0.823 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.103 0.897 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.353 -20.193 0.976 22.713 hybrid contribution 0.594 -1.434 -0.159 1.561 sum -9.759 -21.627 0.817 23.741 Atomic orbital electron populations 1.23134 0.80955 1.02375 1.04252 1.47700 1.06010 1.04968 1.76457 1.17752 0.86767 0.82488 0.75376 1.90902 1.13263 1.86424 1.47767 1.19975 0.92166 0.94000 1.11756 1.27154 0.99651 1.04626 1.06365 1.83563 1.07068 0.96878 1.66562 1.24916 0.96218 1.01326 1.12515 1.24428 1.06809 0.90745 0.93522 1.86600 1.43241 1.86478 1.17071 0.86312 0.75912 0.83458 0.83419 1.15579 1.14207 1.15491 1.21055 1.01480 0.88315 0.97375 1.21608 1.02297 0.83636 0.92249 0.84224 1.22299 0.94460 1.02125 1.01149 1.23950 1.04166 1.01945 0.84589 1.44881 1.19274 1.15610 1.15245 0.73149 1.24226 0.94373 0.87272 1.10785 1.22928 0.91211 0.92517 0.97697 1.87775 1.56456 1.26303 1.55037 1.22892 0.84964 0.89101 1.01315 0.83242 1.24924 1.04409 0.98000 0.90975 0.90852 0.88729 0.89697 0.78603 0.85257 0.77384 0.82256 0.86211 0.87219 0.84302 0.84238 0.84175 0.83860 0.89678 0.84839 0.83574 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.82 6.14 59.84 0.37 -0.46 16 2 N -0.61 12.16 2.74 -175.36 -0.48 11.68 16 3 C 0.59 -7.93 7.65 -12.62 -0.10 -8.03 16 4 O -0.51 4.42 16.09 5.25 0.08 4.50 16 5 C -0.16 2.05 5.94 -104.63 -0.62 1.43 16 6 C -0.24 3.70 8.85 29.93 0.26 3.96 16 7 S 0.19 -2.44 20.20 -107.50 -2.17 -4.61 16 8 C -0.23 2.50 5.65 -36.18 -0.20 2.30 16 9 C -0.04 0.42 2.94 36.01 0.11 0.53 16 10 O -0.53 4.59 12.88 -35.23 -0.45 4.14 16 11 Si 0.89 -8.68 26.20 -169.99 -4.45 -13.14 16 12 H -0.23 2.22 7.11 56.52 0.40 2.62 16 13 H -0.22 1.70 7.11 56.52 0.40 2.11 16 14 H -0.23 2.30 7.11 56.52 0.40 2.70 16 15 C -0.05 0.55 9.96 -39.02 -0.39 0.16 16 16 C 0.11 -2.29 2.59 -68.30 -0.18 -2.47 16 17 H 0.14 -2.40 6.87 -51.36 -0.35 -2.75 16 18 C -0.16 4.09 4.59 -27.53 -0.13 3.96 16 19 C -0.03 0.77 4.92 -4.80 -0.02 0.75 16 20 N -0.37 11.87 0.63 -236.64 -0.15 11.72 16 21 H 0.43 -15.38 8.42 -38.76 -0.33 -15.71 16 22 C -0.04 1.34 5.52 -4.87 -0.03 1.32 16 23 C 0.03 -0.84 6.03 36.70 0.22 -0.62 16 24 O -0.34 7.25 10.39 -35.20 -0.37 6.89 16 25 C 0.08 -1.80 3.35 -26.94 -0.09 -1.89 16 26 H 0.15 -3.21 8.23 -51.35 -0.42 -3.63 16 27 C -0.06 1.78 5.24 -4.03 -0.02 1.76 16 28 H 0.07 -2.11 2.13 -51.93 -0.11 -2.22 16 29 H 0.09 -2.18 6.13 -51.93 -0.32 -2.50 16 30 H 0.09 -2.04 6.63 -51.93 -0.34 -2.39 16 31 H 0.20 -3.91 3.44 -52.62 -0.18 -4.09 16 32 H 0.13 -1.38 7.96 -51.93 -0.41 -1.79 16 33 H 0.38 -4.54 8.70 45.56 0.40 -4.14 16 34 H 0.16 -1.43 8.06 -52.49 -0.42 -1.85 16 35 H 0.12 -2.79 8.24 -51.10 -0.42 -3.21 16 36 H 0.11 -2.77 5.71 -52.04 -0.30 -3.06 16 37 H 0.14 -4.32 5.38 -51.60 -0.28 -4.60 16 38 H 0.14 -4.41 8.08 -51.58 -0.42 -4.82 16 39 H 0.14 -4.33 8.20 -51.50 -0.42 -4.75 16 40 H 0.14 -4.54 8.04 -51.49 -0.41 -4.96 16 41 H 0.09 -2.14 5.87 -51.94 -0.30 -2.44 16 42 H 0.13 -3.27 8.28 -50.97 -0.42 -3.69 16 43 H 0.15 -4.33 8.15 -51.90 -0.42 -4.76 16 44 H 0.15 -4.57 4.42 -52.05 -0.23 -4.80 16 LS Contribution 326.77 15.07 4.92 4.92 Total: 1.00 -37.12 326.77 -8.80 -45.93 By element: Atomic # 1 Polarization: -69.83 SS G_CDS: -4.92 Total: -74.75 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.82 Total: 2.72 kcal Atomic # 7 Polarization: 24.03 SS G_CDS: -0.63 Total: 23.40 kcal Atomic # 8 Polarization: 16.26 SS G_CDS: -0.74 Total: 15.52 kcal Atomic # 14 Polarization: -8.68 SS G_CDS: -4.45 Total: -13.14 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.17 Total: -4.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.12 -8.80 -45.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636268655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.619 kcal (2) G-P(sol) polarization free energy of solvation -37.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds