Wall clock time and date at job start Mon Mar 23 2020 11:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86306 * 109.46542 * 2 1 4 4 H 1.48498 * 109.47248 * 299.99992 * 3 2 1 5 5 H 1.48499 * 109.46977 * 60.00139 * 3 2 1 6 6 H 1.48502 * 109.46729 * 179.97438 * 3 2 1 7 7 C 1.50697 * 109.47068 * 240.00357 * 2 1 3 8 8 C 1.34786 * 125.65421 * 300.01931 * 7 2 1 9 9 C 1.40858 * 107.04867 * 179.78695 * 8 7 2 10 10 C 1.36090 * 106.73143 * 0.34739 * 9 8 7 11 11 O 1.34287 * 125.65476 * 120.02278 * 7 2 1 12 12 C 1.47600 * 125.94060 * 179.90678 * 10 9 8 13 13 C 1.39797 * 119.99573 * 179.71648 * 12 10 9 14 14 C 1.36601 * 119.99874 * 180.02562 * 13 12 10 15 15 C 1.39804 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.39813 * 119.99518 * 0.26676 * 15 14 13 17 17 C 1.36608 * 119.99503 * 359.47182 * 16 15 14 18 18 C 1.47580 * 120.00647 * 180.02562 * 15 14 13 19 19 S 1.75838 * 125.14520 * 0.02562 * 18 15 14 20 20 C 1.75839 * 91.15272 * 179.97438 * 19 18 15 21 21 C 1.37048 * 109.63140 * 359.97438 * 20 19 18 22 22 C 1.36505 * 114.71588 * 0.02562 * 21 20 19 23 23 C 1.41551 * 125.18357 * 180.02562 * 20 19 18 24 24 O 1.22543 * 120.00078 * 179.97438 * 23 20 19 25 25 O 1.22540 * 119.99813 * 359.95633 * 23 20 19 26 26 H 1.08994 * 109.47076 * 120.00011 * 2 1 3 27 27 H 1.07997 * 126.48245 * 359.97438 * 8 7 2 28 28 H 1.07993 * 126.63768 * 180.22546 * 9 8 7 29 29 H 1.08001 * 120.00117 * 359.97438 * 13 12 10 30 30 H 1.08003 * 120.00015 * 180.02562 * 14 13 12 31 31 H 1.07995 * 120.00062 * 179.70987 * 16 15 14 32 32 H 1.08003 * 119.99363 * 180.23490 * 17 16 15 33 33 H 1.08010 * 122.64048 * 180.26676 * 21 20 19 34 34 H 1.07998 * 122.60143 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7566 0.0000 4 1 1.5548 2.4566 -1.2125 5 1 1.5548 2.4565 1.2125 6 1 3.5349 1.7566 0.0006 7 6 1.9313 -0.7103 -1.2305 8 6 1.6766 -1.9932 -1.5561 9 6 2.3295 -2.2465 -2.7782 10 6 2.9604 -1.0937 -3.1317 11 8 2.7070 -0.1701 -2.1843 12 6 3.7754 -0.8891 -4.3452 13 6 4.3650 0.3547 -4.5896 14 6 5.1189 0.5442 -5.7128 15 6 5.3012 -0.5057 -6.6178 16 6 4.7074 -1.7481 -6.3758 17 6 3.9579 -1.9391 -5.2498 18 6 6.1161 -0.3012 -7.8311 19 16 6.9175 1.2009 -8.2708 20 6 7.5574 0.4716 -9.7373 21 6 7.1465 -0.8332 -9.8198 22 6 6.3632 -1.2515 -8.7831 23 6 8.3735 1.1313 -10.6872 24 8 8.7684 0.5295 -11.6790 25 8 8.6850 2.3044 -10.5180 26 1 1.7923 -0.5138 0.8899 27 1 1.0817 -2.6937 -0.9889 28 1 2.3309 -3.1764 -3.3275 29 1 4.2238 1.1659 -3.8907 30 1 5.5747 1.5050 -5.9015 31 1 4.8443 -2.5578 -7.0771 32 1 3.5023 -2.9000 -5.0610 33 1 7.4240 -1.4807 -10.6385 34 1 5.9690 -2.2550 -8.7197 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874971416.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:12 Heat of formation + Delta-G solvation = -116.230839 kcal Electronic energy + Delta-G solvation = -22881.871832 eV Core-core repulsion = 19108.302400 eV Total energy + Delta-G solvation = -3773.569432 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.041 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85409 -38.23455 -36.99881 -35.35658 -31.96858 -31.68394 -31.65252 -30.39625 -30.02305 -27.84618 -26.08728 -23.86600 -22.13141 -21.88428 -20.63255 -19.60201 -19.08235 -18.48958 -17.25961 -16.17145 -15.36189 -14.50080 -14.46504 -13.98727 -13.66053 -13.50759 -12.98138 -12.87669 -12.66565 -12.45087 -12.33229 -12.12582 -11.85027 -11.50086 -11.33614 -11.18228 -10.96103 -10.73428 -10.59849 -10.37170 -10.00274 -9.41160 -9.34302 -9.31124 -9.22393 -8.75059 -8.12720 -8.07998 -7.19656 -7.18109 -7.04989 -6.95392 -6.90663 -6.01656 -5.52640 -4.88799 1.42578 2.44419 2.52002 3.00962 3.54452 3.60488 3.99413 4.08228 4.12451 4.16862 4.37685 4.58846 5.01655 5.11571 5.76751 5.82467 5.92577 6.05106 6.35675 6.42960 6.50097 6.52074 6.58300 6.79288 6.83376 6.88770 7.03008 7.13442 7.29768 7.37607 7.38362 7.51248 7.55068 7.73508 7.78132 7.86464 7.90741 7.94794 8.00829 8.23942 8.89738 10.38910 10.88510 11.30025 Molecular weight = 328.04amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.002383 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.525661 B =11747.532137 C =12661.911590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.846 6.846 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.296 1.296 7 C 0.043 3.957 8 C -0.240 4.240 9 C -0.176 4.176 10 C -0.033 4.033 11 O -0.179 6.179 12 C 0.004 3.996 13 C -0.105 4.105 14 C -0.111 4.111 15 C -0.007 4.007 16 C -0.103 4.103 17 C -0.104 4.104 18 C -0.186 4.186 19 S 0.166 5.834 20 C -0.205 4.205 21 C -0.125 4.125 22 C -0.126 4.126 23 C 0.539 3.461 24 O -0.681 6.681 25 O -0.689 6.689 26 H 0.012 0.988 27 H 0.138 0.862 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 -8.408 3.748 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.793 6.793 2 C -0.065 4.065 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.224 1.224 7 C -0.009 4.009 8 C -0.259 4.259 9 C -0.196 4.196 10 C -0.082 4.082 11 O -0.077 6.077 12 C 0.003 3.997 13 C -0.123 4.123 14 C -0.130 4.130 15 C -0.009 4.009 16 C -0.123 4.123 17 C -0.122 4.122 18 C -0.304 4.304 19 S 0.435 5.565 20 C -0.326 4.326 21 C -0.154 4.154 22 C -0.158 4.158 23 C 0.375 3.625 24 O -0.598 6.598 25 O -0.605 6.605 26 H 0.029 0.971 27 H 0.156 0.844 28 H 0.154 0.846 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.317 -5.575 4.071 6.911 hybrid contribution -0.396 -2.040 -0.633 2.173 sum -0.079 -7.616 3.438 8.356 Atomic orbital electron populations 1.95005 1.01947 1.90826 1.91530 1.22531 0.99639 0.98671 0.85705 0.86916 0.74657 0.86805 0.78408 1.20094 1.20811 1.22390 1.26118 0.88444 0.94171 0.92181 1.21179 1.08264 0.97593 0.98884 1.21656 1.01759 0.97883 0.98288 1.20180 1.06102 0.89062 0.92816 1.84028 1.55567 1.39595 1.28495 1.17871 0.96347 0.94256 0.91178 1.20897 0.97154 0.96809 0.97430 1.20874 0.99455 0.98449 0.94215 1.18137 0.96563 0.94030 0.92168 1.20728 0.97850 0.96377 0.97324 1.20614 0.99640 0.98226 0.93769 1.23608 1.07656 0.99214 0.99928 1.83923 1.43736 1.11239 1.17652 1.26852 1.06022 0.98975 1.00753 1.20518 0.99701 0.95462 0.99732 1.20317 1.01525 0.99549 0.94403 1.14786 0.79396 0.85367 0.82962 1.90779 1.63088 1.72168 1.33805 1.90793 1.66351 1.20926 1.82479 0.97074 0.84438 0.84564 0.85442 0.85878 0.85592 0.85599 0.84204 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.85 -36.25 18.00 -35.23 -0.63 -36.89 16 2 C 0.06 2.02 3.07 36.00 0.11 2.13 16 3 Si 0.90 29.75 27.64 -169.99 -4.70 25.05 16 4 H -0.28 -9.46 7.11 56.52 0.40 -9.06 16 5 H -0.28 -9.06 7.11 56.52 0.40 -8.66 16 6 H -0.30 -9.19 7.11 56.52 0.40 -8.79 16 7 C 0.04 1.49 6.25 -35.53 -0.22 1.26 16 8 C -0.24 -7.72 10.76 -39.81 -0.43 -8.15 16 9 C -0.18 -5.12 10.26 -39.36 -0.40 -5.52 16 10 C -0.03 -1.00 7.02 -36.54 -0.26 -1.26 16 11 O -0.18 -5.97 8.78 4.62 0.04 -5.93 16 12 C 0.00 0.11 5.88 -104.92 -0.62 -0.50 16 13 C -0.10 -2.86 9.66 -39.59 -0.38 -3.24 16 14 C -0.11 -2.96 9.54 -39.59 -0.38 -3.33 16 15 C -0.01 -0.19 5.88 -104.91 -0.62 -0.81 16 16 C -0.10 -2.52 9.49 -39.58 -0.38 -2.90 16 17 C -0.10 -2.59 9.50 -39.59 -0.38 -2.96 16 18 C -0.19 -5.26 6.41 -36.30 -0.23 -5.49 16 19 S 0.17 5.12 21.88 -107.50 -2.35 2.77 16 20 C -0.21 -7.21 6.25 -38.75 -0.24 -7.45 16 21 C -0.12 -3.87 9.82 -40.64 -0.40 -4.27 16 22 C -0.13 -3.49 9.65 -40.74 -0.39 -3.88 16 23 C 0.54 22.07 7.84 31.99 0.25 22.32 16 24 O -0.68 -29.21 17.59 -20.75 -0.37 -29.58 16 25 O -0.69 -29.69 17.71 -20.75 -0.37 -30.06 16 26 H 0.01 0.43 7.96 -51.93 -0.41 0.02 16 27 H 0.14 4.24 8.06 -52.49 -0.42 3.82 16 28 H 0.14 3.39 7.25 -52.49 -0.38 3.01 16 29 H 0.13 3.44 7.90 -52.49 -0.41 3.02 16 30 H 0.12 3.15 7.25 -52.48 -0.38 2.77 16 31 H 0.13 2.76 6.74 -52.49 -0.35 2.41 16 32 H 0.13 2.80 6.97 -52.48 -0.37 2.44 16 33 H 0.14 4.22 7.98 -52.48 -0.42 3.80 16 34 H 0.13 3.15 6.89 -52.49 -0.36 2.78 16 LS Contribution 327.21 15.07 4.93 4.93 Total: -2.00 -85.47 327.21 -10.72 -96.19 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -2.31 Total: -2.44 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -4.96 Total: -24.04 kcal Atomic # 8 Polarization: -101.13 SS G_CDS: -1.33 Total: -102.46 kcal Atomic # 14 Polarization: 29.75 SS G_CDS: -4.70 Total: 25.05 kcal Atomic # 16 Polarization: 5.12 SS G_CDS: -2.35 Total: 2.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -85.47 -10.72 -96.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874971416.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.043 kcal (2) G-P(sol) polarization free energy of solvation -85.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds