Wall clock time and date at job start Mon Mar 23 2020 11:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86306 * 109.46542 * 2 1 4 4 H 1.48498 * 109.47248 * 299.99992 * 3 2 1 5 5 H 1.48499 * 109.46977 * 60.00139 * 3 2 1 6 6 H 1.48502 * 109.46729 * 179.97438 * 3 2 1 7 7 C 1.50697 * 109.47068 * 240.00357 * 2 1 3 8 8 C 1.34786 * 125.65421 * 300.01931 * 7 2 1 9 9 C 1.40858 * 107.04867 * 179.78695 * 8 7 2 10 10 C 1.36090 * 106.73143 * 0.34739 * 9 8 7 11 11 O 1.34287 * 125.65476 * 120.02278 * 7 2 1 12 12 C 1.47600 * 125.94060 * 179.90678 * 10 9 8 13 13 C 1.39797 * 119.99573 * 179.71648 * 12 10 9 14 14 C 1.36601 * 119.99874 * 180.02562 * 13 12 10 15 15 C 1.39804 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.39813 * 119.99518 * 0.26676 * 15 14 13 17 17 C 1.36608 * 119.99503 * 359.47182 * 16 15 14 18 18 C 1.47580 * 120.00647 * 180.02562 * 15 14 13 19 19 S 1.75838 * 125.14520 * 0.02562 * 18 15 14 20 20 C 1.75839 * 91.15272 * 179.97438 * 19 18 15 21 21 C 1.37048 * 109.63140 * 359.97438 * 20 19 18 22 22 C 1.36505 * 114.71588 * 0.02562 * 21 20 19 23 23 C 1.41551 * 125.18357 * 180.02562 * 20 19 18 24 24 O 1.22543 * 120.00078 * 179.97438 * 23 20 19 25 25 O 1.22540 * 119.99813 * 359.95633 * 23 20 19 26 26 H 1.08994 * 109.47076 * 120.00011 * 2 1 3 27 27 H 1.07997 * 126.48245 * 359.97438 * 8 7 2 28 28 H 1.07993 * 126.63768 * 180.22546 * 9 8 7 29 29 H 1.08001 * 120.00117 * 359.97438 * 13 12 10 30 30 H 1.08003 * 120.00015 * 180.02562 * 14 13 12 31 31 H 1.07995 * 120.00062 * 179.70987 * 16 15 14 32 32 H 1.08003 * 119.99363 * 180.23490 * 17 16 15 33 33 H 1.08010 * 122.64048 * 180.26676 * 21 20 19 34 34 H 1.07998 * 122.60143 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7566 0.0000 4 1 1.5548 2.4566 -1.2125 5 1 1.5548 2.4565 1.2125 6 1 3.5349 1.7566 0.0006 7 6 1.9313 -0.7103 -1.2305 8 6 1.6766 -1.9932 -1.5561 9 6 2.3295 -2.2465 -2.7782 10 6 2.9604 -1.0937 -3.1317 11 8 2.7070 -0.1701 -2.1843 12 6 3.7754 -0.8891 -4.3452 13 6 4.3650 0.3547 -4.5896 14 6 5.1189 0.5442 -5.7128 15 6 5.3012 -0.5057 -6.6178 16 6 4.7074 -1.7481 -6.3758 17 6 3.9579 -1.9391 -5.2498 18 6 6.1161 -0.3012 -7.8311 19 16 6.9175 1.2009 -8.2708 20 6 7.5574 0.4716 -9.7373 21 6 7.1465 -0.8332 -9.8198 22 6 6.3632 -1.2515 -8.7831 23 6 8.3735 1.1313 -10.6872 24 8 8.7684 0.5295 -11.6790 25 8 8.6850 2.3044 -10.5180 26 1 1.7923 -0.5138 0.8899 27 1 1.0817 -2.6937 -0.9889 28 1 2.3309 -3.1764 -3.3275 29 1 4.2238 1.1659 -3.8907 30 1 5.5747 1.5050 -5.9015 31 1 4.8443 -2.5578 -7.0771 32 1 3.5023 -2.9000 -5.0610 33 1 7.4240 -1.4807 -10.6385 34 1 5.9690 -2.2550 -8.7197 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874971416.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:11 Heat of formation + Delta-G solvation = -184.709618 kcal Electronic energy + Delta-G solvation = -22884.841295 eV Core-core repulsion = 19108.302400 eV Total energy + Delta-G solvation = -3776.538895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.041 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.31154 -40.37309 -39.91680 -37.90361 -34.95280 -34.35478 -34.20726 -32.90129 -32.12241 -30.38088 -28.62448 -26.34290 -24.63554 -24.03217 -22.95297 -22.05840 -21.62813 -20.97112 -19.59047 -18.57952 -18.00306 -16.98366 -16.93071 -16.29354 -16.19452 -15.88957 -15.73167 -15.50318 -15.44754 -14.90335 -14.54045 -14.40377 -14.19796 -14.02863 -13.68649 -13.58330 -13.49255 -13.26169 -12.98424 -12.56159 -12.16208 -12.11365 -12.04594 -11.83433 -11.58486 -11.05788 -10.53673 -10.49884 -10.38476 -10.07727 -10.07492 -9.55238 -9.36811 -8.63996 -8.36437 -7.89177 -0.86425 0.17200 0.45195 0.61802 1.13190 1.20867 1.35876 1.50136 1.54175 1.72226 1.98017 2.16182 2.45620 2.92769 3.37877 3.53513 3.69963 3.90912 3.95741 4.23733 4.26986 4.34305 4.37913 4.51838 4.56440 4.65843 4.72475 4.90064 5.01481 5.04768 5.16383 5.18190 5.24585 5.36048 5.44351 5.49717 5.53344 5.61489 5.80217 5.88602 6.40992 7.52088 7.74093 8.11728 Molecular weight = 328.04amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.002383 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.525661 B =11747.532137 C =12661.911590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.921 6.921 2 C 0.008 3.992 3 Si 0.960 3.040 4 H -0.299 1.299 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.007 4.007 8 C -0.241 4.241 9 C -0.165 4.165 10 C -0.033 4.033 11 O -0.197 6.197 12 C -0.011 4.011 13 C -0.115 4.115 14 C -0.112 4.112 15 C -0.021 4.021 16 C -0.081 4.081 17 C -0.087 4.087 18 C -0.151 4.151 19 S 0.164 5.836 20 C -0.288 4.288 21 C -0.087 4.087 22 C -0.123 4.123 23 C 0.528 3.472 24 O -0.719 6.719 25 O -0.730 6.730 26 H 0.015 0.985 27 H 0.141 0.859 28 H 0.188 0.812 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 -11.570 3.814 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.870 6.870 2 C -0.110 4.110 3 Si 0.789 3.211 4 H -0.226 1.226 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.058 4.058 8 C -0.260 4.260 9 C -0.183 4.183 10 C -0.081 4.081 11 O -0.095 6.095 12 C -0.012 4.012 13 C -0.133 4.133 14 C -0.131 4.131 15 C -0.023 4.023 16 C -0.101 4.101 17 C -0.105 4.105 18 C -0.270 4.270 19 S 0.434 5.566 20 C -0.407 4.407 21 C -0.118 4.118 22 C -0.152 4.152 23 C 0.369 3.631 24 O -0.638 6.638 25 O -0.649 6.649 26 H 0.032 0.968 27 H 0.159 0.841 28 H 0.205 0.795 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.187 0.813 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 0.111 -8.736 4.161 9.677 hybrid contribution -0.338 -1.205 -0.617 1.395 sum -0.227 -9.941 3.545 10.556 Atomic orbital electron populations 1.94914 1.06134 1.93111 1.92844 1.23073 0.97448 1.03407 0.87037 0.85928 0.76075 0.81477 0.77642 1.22572 1.19523 1.18828 1.25488 0.91735 0.95393 0.93151 1.21495 1.07547 0.96788 1.00150 1.22040 1.00053 0.99351 0.96896 1.20864 1.05744 0.88879 0.92647 1.83946 1.55824 1.40727 1.29034 1.18068 0.96701 0.95442 0.90990 1.20890 0.97733 0.97014 0.97704 1.20911 0.99196 0.98927 0.94055 1.18235 0.97295 0.95315 0.91442 1.21132 0.95509 0.96054 0.97402 1.20978 0.98456 0.98651 0.92429 1.23900 1.05418 0.97606 1.00048 1.83810 1.44099 1.12959 1.15732 1.25753 1.10596 1.01205 1.03182 1.20793 0.97401 0.93520 1.00122 1.20630 1.00528 1.01683 0.92384 1.15272 0.79386 0.84950 0.83535 1.90706 1.64711 1.72496 1.35934 1.90729 1.67981 1.22780 1.83400 0.96768 0.84085 0.79531 0.86232 0.85711 0.81326 0.81825 0.83590 0.79389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.92 -80.19 18.00 -148.98 -2.68 -82.87 16 2 C 0.01 0.58 3.07 71.23 0.22 0.80 16 3 Si 0.96 61.53 27.64 68.60 1.90 63.42 16 4 H -0.30 -20.21 7.11 99.48 0.71 -19.50 16 5 H -0.27 -16.60 7.11 99.48 0.71 -15.89 16 6 H -0.26 -15.24 7.11 99.48 0.71 -14.54 16 7 C -0.01 -0.45 6.25 24.89 0.16 -0.30 16 8 C -0.24 -14.91 10.76 22.12 0.24 -14.67 16 9 C -0.16 -8.70 10.26 22.41 0.23 -8.47 16 10 C -0.03 -1.86 7.02 24.24 0.17 -1.69 16 11 O -0.20 -12.69 8.78 -6.39 -0.06 -12.75 16 12 C -0.01 -0.56 5.88 -20.05 -0.12 -0.68 16 13 C -0.12 -5.81 9.66 22.26 0.22 -5.60 16 14 C -0.11 -5.44 9.54 22.27 0.21 -5.23 16 15 C -0.02 -0.97 5.88 -20.05 -0.12 -1.09 16 16 C -0.08 -3.26 9.49 22.27 0.21 -3.04 16 17 C -0.09 -3.61 9.50 22.26 0.21 -3.39 16 18 C -0.15 -7.65 6.41 24.39 0.16 -7.49 16 19 S 0.16 9.72 21.88 -56.49 -1.24 8.49 16 20 C -0.29 -19.75 6.25 22.81 0.14 -19.61 16 21 C -0.09 -5.03 9.82 21.58 0.21 -4.82 16 22 C -0.12 -5.90 9.65 21.52 0.21 -5.69 16 23 C 0.53 43.60 7.84 68.64 0.54 44.14 16 24 O -0.72 -62.21 17.59 16.94 0.30 -61.91 16 25 O -0.73 -63.93 17.71 16.95 0.30 -63.63 16 26 H 0.02 1.06 7.96 -2.39 -0.02 1.04 16 27 H 0.14 8.47 8.06 -2.91 -0.02 8.45 16 28 H 0.19 7.81 7.25 -2.91 -0.02 7.79 16 29 H 0.12 6.16 7.90 -2.91 -0.02 6.14 16 30 H 0.12 5.97 7.25 -2.91 -0.02 5.95 16 31 H 0.17 5.46 6.74 -2.91 -0.02 5.44 16 32 H 0.16 5.62 6.97 -2.91 -0.02 5.60 16 33 H 0.15 8.24 7.98 -2.91 -0.02 8.21 16 34 H 0.19 7.03 6.89 -2.91 -0.02 7.01 16 Total: -2.00 -183.72 327.21 3.33 -180.38 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.93 Total: 5.70 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 2.88 Total: -36.84 kcal Atomic # 8 Polarization: -219.02 SS G_CDS: -2.14 Total: -221.16 kcal Atomic # 14 Polarization: 61.53 SS G_CDS: 1.90 Total: 63.42 kcal Atomic # 16 Polarization: 9.72 SS G_CDS: -1.24 Total: 8.49 kcal Total: -183.72 3.33 -180.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874971416.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.325 kcal (2) G-P(sol) polarization free energy of solvation -183.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -180.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds