Wall clock time and date at job start Mon Mar 23 2020 11:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.47277 * 2 1 4 4 H 1.48496 * 109.47379 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47163 * 60.00038 * 3 2 1 6 6 H 1.48503 * 109.47019 * 300.00184 * 3 2 1 7 7 C 1.50695 * 109.46967 * 120.00009 * 2 1 3 8 8 S 1.70610 * 124.52293 * 244.69285 * 7 2 1 9 9 C 1.75830 * 91.56237 * 179.97438 * 8 7 2 10 10 C 1.36702 * 109.08057 * 0.31154 * 9 8 7 11 11 C 1.33859 * 124.51838 * 65.00033 * 7 2 1 12 12 C 1.46542 * 125.45845 * 180.10107 * 9 8 7 13 13 O 1.21717 * 119.99831 * 180.24418 * 12 9 8 14 14 N 1.34771 * 119.99992 * 0.24251 * 12 9 8 15 15 C 1.39658 * 119.99716 * 174.72291 * 14 12 9 16 16 C 1.39022 * 119.95422 * 326.35653 * 15 14 12 17 17 C 1.37837 * 120.04512 * 179.72648 * 16 15 14 18 18 C 1.39411 * 119.95011 * 0.56656 * 17 16 15 19 19 C 1.39412 * 119.91169 * 359.70800 * 18 17 16 20 20 C 1.37834 * 119.95175 * 359.97438 * 19 18 17 21 21 C 1.48357 * 120.04337 * 179.72651 * 18 17 16 22 22 N 1.31032 * 126.93792 * 179.66552 * 21 18 17 23 23 O 1.20914 * 111.40713 * 179.86135 * 22 21 18 24 24 C 1.34073 * 111.84659 * 0.42092 * 23 22 21 25 25 C 1.35215 * 106.68984 * 359.74503 * 24 23 22 26 26 H 1.09001 * 109.46664 * 240.00245 * 2 1 3 27 27 H 1.07997 * 123.34973 * 179.78224 * 10 9 8 28 28 H 1.07996 * 122.44831 * 359.95329 * 11 7 2 29 29 H 0.96997 * 120.00101 * 354.72708 * 14 12 9 30 30 H 1.08000 * 119.97637 * 359.97438 * 16 15 14 31 31 H 1.08002 * 120.02092 * 180.29721 * 17 16 15 32 32 H 1.07998 * 120.02531 * 179.97438 * 19 18 17 33 33 H 1.07992 * 119.97898 * 180.02562 * 20 19 18 34 34 H 1.07991 * 126.65653 * 179.76681 * 24 23 22 35 35 H 1.07995 * 128.03122 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 3.5350 1.7564 -0.0006 5 1 1.5551 2.4565 1.2125 6 1 1.5550 2.4565 -1.2125 7 6 1.9313 -0.7104 1.2304 8 16 2.8201 0.0344 2.4819 9 6 2.9256 -1.4780 3.3724 10 6 2.2873 -2.4584 2.6653 11 6 1.7447 -2.0113 1.4845 12 6 3.5949 -1.6594 4.6634 13 8 3.6115 -2.7559 5.1915 14 7 4.1922 -0.6122 5.2659 15 6 4.7336 -0.7582 6.5449 16 6 4.1297 -1.6119 7.4610 17 6 4.6657 -1.7617 8.7220 18 6 5.8075 -1.0475 9.0823 19 6 6.4083 -0.1877 8.1640 20 6 5.8728 -0.0457 6.9019 21 6 6.3826 -1.2026 10.4411 22 7 7.4475 -0.6064 10.9182 23 8 7.6628 -0.9359 12.0614 24 6 6.7575 -1.8199 12.5048 25 6 5.8929 -2.0337 11.4874 26 1 1.7923 -0.5138 -0.8900 27 1 2.2160 -3.4822 3.0015 28 1 1.2072 -2.6620 0.8107 29 1 4.2459 0.2429 4.8112 30 1 3.2422 -2.1610 7.1831 31 1 4.1990 -2.4286 9.4318 32 1 7.2926 0.3668 8.4413 33 1 6.3381 0.6199 6.1901 34 1 6.7249 -2.2730 13.4845 35 1 5.0307 -2.6839 11.4725 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558490679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:14 Heat of formation + Delta-G solvation = 1.695817 kcal Electronic energy + Delta-G solvation = -23337.801790 eV Core-core repulsion = 19587.983053 eV Total energy + Delta-G solvation = -3749.818737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.055 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.84567 -41.71230 -39.81790 -38.56991 -36.40911 -34.74686 -33.90429 -32.78129 -32.00852 -31.11205 -29.78670 -27.00701 -24.97737 -24.73397 -23.36274 -23.09245 -22.66544 -21.59265 -20.38207 -19.15396 -18.86948 -18.52591 -18.52011 -17.11637 -16.96822 -16.53250 -16.30715 -15.79435 -15.70158 -15.16142 -15.00794 -14.78981 -14.63226 -14.39838 -14.16913 -13.97707 -13.93944 -13.26985 -13.09598 -13.04370 -12.70909 -12.64124 -12.32305 -12.08062 -11.99620 -11.90256 -11.68531 -11.30771 -10.97446 -10.59619 -10.05702 -9.63119 -9.52664 -9.03672 -8.55859 -7.92100 -0.55413 -0.18868 0.32111 0.40977 0.73775 0.86060 1.29947 1.32627 1.44793 1.50954 1.57121 1.81785 2.10244 2.41435 2.46153 2.79444 3.04303 3.50595 3.62255 3.88820 3.95250 4.20144 4.28480 4.29482 4.37457 4.42197 4.43255 4.47567 4.61653 4.75155 4.93697 5.01803 5.05154 5.17134 5.17851 5.22227 5.33258 5.40483 5.42893 5.56332 5.83724 6.14701 6.83751 7.32405 7.53899 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.033328 B = 0.002345 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.928946 B =11937.934817 C =12553.693825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.926 6.926 2 C -0.001 4.001 3 Si 0.884 3.116 4 H -0.228 1.228 5 H -0.259 1.259 6 H -0.266 1.266 7 C -0.159 4.159 8 S 0.182 5.818 9 C -0.313 4.313 10 C -0.024 4.024 11 C -0.187 4.187 12 C 0.609 3.391 13 O -0.540 6.540 14 N -0.664 5.664 15 C 0.150 3.850 16 C -0.135 4.135 17 C -0.067 4.067 18 C -0.054 4.054 19 C -0.076 4.076 20 C -0.140 4.140 21 C 0.039 3.961 22 N -0.393 5.393 23 O 0.094 5.906 24 C -0.037 4.037 25 C -0.237 4.237 26 H -0.005 1.005 27 H 0.165 0.835 28 H 0.130 0.870 29 H 0.421 0.579 30 H 0.128 0.872 31 H 0.154 0.846 32 H 0.138 0.862 33 H 0.154 0.846 34 H 0.266 0.734 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.805 -2.541 24.872 29.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.876 6.876 2 C -0.119 4.119 3 Si 0.708 3.292 4 H -0.153 1.153 5 H -0.184 1.184 6 H -0.190 1.190 7 C -0.280 4.280 8 S 0.447 5.553 9 C -0.432 4.432 10 C -0.059 4.059 11 C -0.215 4.215 12 C 0.399 3.601 13 O -0.419 6.419 14 N -0.308 5.308 15 C 0.055 3.945 16 C -0.155 4.155 17 C -0.087 4.087 18 C -0.055 4.055 19 C -0.096 4.096 20 C -0.160 4.160 21 C -0.116 4.116 22 N -0.097 5.097 23 O 0.027 5.973 24 C -0.117 4.117 25 C -0.259 4.259 26 H 0.012 0.988 27 H 0.183 0.817 28 H 0.148 0.852 29 H 0.259 0.741 30 H 0.146 0.854 31 H 0.172 0.828 32 H 0.156 0.844 33 H 0.172 0.828 34 H 0.282 0.718 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 17.235 -0.095 24.941 30.317 hybrid contribution -1.918 -1.989 -1.127 2.984 sum 15.317 -2.083 23.815 28.392 Atomic orbital electron populations 1.94930 1.06453 1.92965 1.93277 1.23187 0.97770 1.02131 0.88837 0.86826 0.78540 0.82816 0.80993 1.15256 1.18397 1.19043 1.26237 0.98088 0.99519 1.04131 1.82111 1.50172 1.10826 1.12189 1.24174 1.17326 0.99217 1.02526 1.20806 0.93020 1.00354 0.91693 1.19936 1.06224 0.95602 0.99778 1.16881 0.76798 0.83715 0.82742 1.90783 1.60089 1.25385 1.65672 1.43259 1.57121 1.14325 1.16134 1.18038 0.93725 0.98748 0.83975 1.21133 1.01150 1.00372 0.92867 1.21113 0.94092 0.97870 0.95642 1.17857 0.97066 1.00306 0.90312 1.21112 0.99395 0.96913 0.92188 1.21037 0.94249 1.02793 0.97969 1.22291 0.94194 0.98457 0.96675 1.74145 1.18390 1.22130 0.94990 1.84769 1.45111 1.46913 1.20528 1.26838 0.88847 0.93057 1.02975 1.23192 1.05460 1.05109 0.92111 0.98790 0.81733 0.85185 0.74125 0.85374 0.82815 0.84416 0.82794 0.71788 0.78626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.93 -68.21 18.01 -148.98 -2.68 -70.89 16 2 C 0.00 -0.03 3.02 71.23 0.22 0.18 16 3 Si 0.88 41.39 26.42 68.60 1.81 43.20 16 4 H -0.23 -8.64 7.11 99.48 0.71 -7.93 16 5 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.16 -7.90 5.58 24.69 0.14 -7.77 16 8 S 0.18 6.98 19.23 -56.49 -1.09 5.89 16 9 C -0.31 -11.43 6.45 24.08 0.16 -11.28 16 10 C -0.02 -0.94 10.01 21.72 0.22 -0.73 16 11 C -0.19 -8.58 9.99 21.08 0.21 -8.37 16 12 C 0.61 20.20 7.51 86.41 0.65 20.85 16 13 O -0.54 -19.88 14.53 -4.40 -0.06 -19.95 16 14 N -0.66 -17.79 5.32 -307.13 -1.63 -19.43 16 15 C 0.15 3.79 6.27 38.27 0.24 4.03 16 16 C -0.13 -3.44 8.63 22.36 0.19 -3.25 16 17 C -0.07 -1.40 9.59 22.46 0.22 -1.19 16 18 C -0.05 -1.16 5.88 -20.02 -0.12 -1.28 16 19 C -0.08 -1.63 9.69 22.46 0.22 -1.41 16 20 C -0.14 -2.94 9.95 22.36 0.22 -2.72 16 21 C 0.04 0.78 7.06 42.97 0.30 1.09 16 22 N -0.39 -8.45 11.81 -49.43 -0.58 -9.04 16 23 O 0.09 1.52 11.18 71.33 0.80 2.31 16 24 C -0.04 -0.30 12.27 67.12 0.82 0.52 16 25 C -0.24 -2.90 10.51 22.59 0.24 -2.67 16 26 H 0.00 -0.28 7.96 -2.39 -0.02 -0.29 16 27 H 0.17 5.53 8.06 -2.91 -0.02 5.51 16 28 H 0.13 6.06 8.06 -2.91 -0.02 6.04 16 29 H 0.42 9.48 7.94 -92.71 -0.74 8.75 16 30 H 0.13 3.63 6.42 -2.91 -0.02 3.61 16 31 H 0.15 2.29 7.22 -2.91 -0.02 2.27 16 32 H 0.14 2.71 7.89 -2.91 -0.02 2.69 16 33 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.27 -0.82 8.06 -2.92 -0.02 -0.84 16 35 H 0.20 1.31 7.57 -2.91 -0.02 1.28 16 Total: -1.00 -83.42 327.48 1.67 -81.75 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: 1.19 Total: 0.12 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: 3.92 Total: -13.98 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: -2.22 Total: -28.46 kcal Atomic # 8 Polarization: -86.57 SS G_CDS: -1.95 Total: -88.52 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.81 Total: 43.20 kcal Atomic # 16 Polarization: 6.98 SS G_CDS: -1.09 Total: 5.89 kcal Total: -83.42 1.67 -81.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558490679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.451 kcal (2) G-P(sol) polarization free energy of solvation -83.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds