Wall clock time and date at job start Mon Mar 23 2020 11:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31332 * 125.51307 * 2 1 4 4 N 1.39919 * 108.83719 * 179.97438 * 3 2 1 5 5 C 1.37099 * 107.68340 * 0.02562 * 4 3 2 6 6 C 1.38767 * 125.51820 * 179.97438 * 2 1 3 7 7 N 1.34048 * 120.57400 * 179.97438 * 5 4 3 8 8 C 1.31462 * 120.99052 * 359.97438 * 7 5 4 9 9 C 1.39595 * 120.38359 * 359.68810 * 8 7 5 10 10 C 1.36745 * 119.36681 * 0.60455 * 9 8 7 11 11 N 1.38246 * 120.52063 * 179.70054 * 10 9 8 12 12 C 1.34774 * 119.99719 * 237.68039 * 11 10 9 13 13 O 1.21698 * 120.00060 * 355.22201 * 12 11 10 14 14 C 1.46496 * 119.99633 * 174.94484 * 12 11 10 15 15 S 1.75830 * 125.46357 * 359.97234 * 14 12 11 16 16 C 1.70619 * 91.56409 * 179.91004 * 15 14 12 17 17 C 1.50690 * 124.51955 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47296 * 210.35046 * 17 16 15 19 19 Si 1.86299 * 109.47364 * 330.35360 * 17 16 15 20 20 H 1.48497 * 109.47092 * 59.99997 * 19 17 16 21 21 H 1.48501 * 109.47257 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46898 * 299.99750 * 19 17 16 23 23 C 1.33869 * 110.95450 * 0.35425 * 16 15 14 24 24 C 1.50695 * 122.44230 * 179.69822 * 23 16 15 25 25 C 1.36740 * 125.45783 * 180.27523 * 14 12 11 26 26 H 1.09003 * 109.47036 * 270.03768 * 1 2 3 27 27 H 1.08991 * 109.47277 * 30.03873 * 1 2 3 28 28 H 1.09004 * 109.46865 * 150.04066 * 1 2 3 29 29 H 1.08005 * 126.18127 * 0.02712 * 6 2 1 30 30 H 1.08004 * 119.80794 * 179.97438 * 8 7 5 31 31 H 1.07994 * 120.32253 * 180.32341 * 9 8 7 32 32 H 0.97001 * 119.99682 * 57.67317 * 11 10 9 33 33 H 1.09003 * 109.47293 * 90.35627 * 17 16 15 34 34 H 1.09001 * 109.47723 * 270.00047 * 24 23 16 35 35 H 1.09003 * 109.47486 * 30.00420 * 24 23 16 36 36 H 1.09001 * 109.47271 * 149.99993 * 24 23 16 37 37 H 1.07994 * 123.35354 * 0.02562 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2699 1.0690 0.0000 4 7 3.6103 0.6675 0.0006 5 6 3.6344 -0.7033 0.0004 6 6 2.3132 -1.1295 0.0005 7 7 4.8003 -1.3647 0.0003 8 6 5.9451 -0.7185 0.0000 9 6 5.9681 0.6773 -0.0069 10 6 4.7875 1.3674 -0.0007 11 7 4.7825 2.7498 -0.0011 12 6 4.1613 3.4216 0.9885 13 8 3.5314 2.8141 1.8342 14 6 4.2494 4.8826 1.0494 15 16 5.1232 5.9002 -0.0875 16 6 4.6663 7.3127 0.7536 17 6 5.0635 8.7104 0.3544 18 8 5.1595 9.5299 1.5211 19 14 6.7135 8.6644 -0.5095 20 1 6.6137 7.8128 -1.7220 21 1 7.1052 10.0419 -0.9024 22 1 7.7369 8.1019 0.4077 23 6 3.9139 7.0129 1.8194 24 6 3.3741 8.0679 2.7504 25 6 3.6701 5.6732 2.0030 26 1 -0.3633 0.0007 1.0277 27 1 -0.3633 0.8896 -0.5144 28 1 -0.3633 -0.8904 -0.5132 29 1 1.9741 -2.1549 0.0006 30 1 6.8734 -1.2707 0.0004 31 1 6.9091 1.2071 -0.0124 32 1 5.2260 3.2362 -0.7135 33 1 4.3123 9.1234 -0.3188 34 1 4.0910 8.2467 3.5517 35 1 3.2104 8.9922 2.1963 36 1 2.4302 7.7279 3.1766 37 1 3.0801 5.2833 2.8192 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630445488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:11 Heat of formation + Delta-G solvation = 57.119415 kcal Electronic energy + Delta-G solvation = -25102.856724 eV Core-core repulsion = 21360.422608 eV Total energy + Delta-G solvation = -3742.434117 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.49488 -39.93744 -38.27649 -37.49394 -35.69779 -33.16701 -32.13587 -31.55654 -29.46790 -29.05831 -28.31813 -27.24012 -25.35457 -23.71513 -22.74935 -21.67190 -20.87311 -20.47243 -18.58226 -18.39073 -17.60752 -17.12129 -16.59096 -16.07219 -15.49721 -15.26199 -14.85415 -14.57126 -14.06224 -13.97541 -13.64792 -13.53849 -13.33552 -13.15062 -12.93846 -12.47614 -12.36444 -12.17917 -11.79971 -11.46281 -11.22524 -11.12844 -11.06274 -10.88320 -10.50758 -10.27374 -10.11054 -10.05808 -9.92213 -9.88765 -9.64479 -9.44468 -7.98305 -7.90885 -7.57781 -6.09458 -5.45162 0.27284 0.75768 1.11478 1.79759 2.07024 2.49311 2.55821 2.69310 2.93087 3.24615 3.26656 3.35710 3.40175 3.62567 3.72006 4.07045 4.39851 4.56824 4.68651 4.85096 5.00188 5.08266 5.33336 5.43999 5.46105 5.52487 5.73714 5.80705 5.91655 6.00465 6.03828 6.22941 6.29870 6.47343 6.60068 6.70025 6.92105 7.02457 7.05217 7.28247 7.40031 7.42419 7.48020 7.76630 8.00692 9.73032 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.003492 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.351952 B = 8016.206275 C = 8905.109822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.108 3.892 3 N -0.284 5.284 4 N -0.311 5.311 5 C 0.266 3.734 6 C -0.266 4.266 7 N -0.475 5.475 8 C 0.193 3.807 9 C -0.247 4.247 10 C 0.441 3.559 11 N -0.680 5.680 12 C 0.612 3.388 13 O -0.504 6.504 14 C -0.326 4.326 15 S 0.108 5.892 16 C -0.114 4.114 17 C 0.052 3.948 18 O -0.832 6.832 19 Si 0.853 3.147 20 H -0.285 1.285 21 H -0.264 1.264 22 H -0.270 1.270 23 C -0.139 4.139 24 C -0.061 4.061 25 C -0.012 4.012 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.161 0.839 30 H 0.184 0.816 31 H 0.170 0.830 32 H 0.424 0.576 33 H 0.011 0.989 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.028 0.972 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 -18.776 -5.676 19.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 N -0.108 5.108 4 N -0.086 5.086 5 C 0.039 3.961 6 C -0.297 4.297 7 N -0.188 5.188 8 C 0.009 3.991 9 C -0.275 4.275 10 C 0.231 3.769 11 N -0.333 5.333 12 C 0.403 3.597 13 O -0.378 6.378 14 C -0.444 4.444 15 S 0.373 5.627 16 C -0.234 4.234 17 C -0.069 4.069 18 O -0.779 6.779 19 Si 0.681 3.319 20 H -0.214 1.214 21 H -0.189 1.189 22 H -0.195 1.195 23 C -0.148 4.148 24 C -0.120 4.120 25 C -0.047 4.047 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.178 0.822 30 H 0.201 0.799 31 H 0.188 0.812 32 H 0.264 0.736 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.047 0.953 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.734 -18.887 -6.493 19.985 hybrid contribution -0.383 0.443 0.920 1.090 sum -1.117 -18.444 -5.573 19.300 Atomic orbital electron populations 1.20263 0.85645 1.03681 1.03595 1.22366 0.97452 0.90162 0.95227 1.78013 0.82517 1.21081 1.29238 1.47543 1.06045 1.07303 1.47735 1.20692 0.94889 0.79411 1.01083 1.20825 0.87425 1.00105 1.21324 1.68221 0.96202 1.37002 1.17349 1.23191 0.96377 0.90692 0.88798 1.21692 0.96475 0.95925 1.13384 1.17512 0.83173 0.83345 0.92899 1.43260 1.58776 1.02205 1.29059 1.17162 0.76763 0.85999 0.79729 1.90853 1.39262 1.68965 1.38718 1.23598 1.18514 0.94211 1.08111 1.82642 1.51269 0.98486 1.30298 1.26834 0.96878 1.02472 0.97198 1.22466 0.97480 0.85809 1.01177 1.94988 1.89955 1.60142 1.32777 0.87586 0.88032 0.79617 0.76634 1.21358 1.18892 1.19523 1.18642 1.03373 0.93529 0.99223 1.20319 0.96709 0.97534 0.97412 1.20716 0.95442 0.92289 0.96268 0.89844 0.90442 0.89908 0.82152 0.79927 0.81235 0.73587 0.97202 0.92213 0.89009 0.95331 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.43 36.01 0.38 -0.33 16 2 C 0.11 1.53 7.16 -82.61 -0.59 0.94 16 3 N -0.28 -4.95 11.54 33.53 0.39 -4.57 16 4 N -0.31 -5.08 3.56 -11.52 -0.04 -5.12 16 5 C 0.27 3.99 7.92 -155.53 -1.23 2.76 16 6 C -0.27 -3.62 10.83 -39.17 -0.42 -4.05 16 7 N -0.48 -6.12 10.49 -12.34 -0.13 -6.25 16 8 C 0.19 1.81 11.25 -17.20 -0.19 1.62 16 9 C -0.25 -2.50 9.97 -39.62 -0.39 -2.90 16 10 C 0.44 6.31 6.58 -152.57 -1.00 5.31 16 11 N -0.68 -10.07 5.26 -12.46 -0.07 -10.14 16 12 C 0.61 11.34 7.55 -12.94 -0.10 11.24 16 13 O -0.50 -10.77 15.60 5.19 0.08 -10.69 16 14 C -0.33 -6.36 6.45 -36.80 -0.24 -6.60 16 15 S 0.11 2.08 19.79 -107.50 -2.13 -0.04 16 16 C -0.11 -2.73 5.57 -35.85 -0.20 -2.93 16 17 C 0.05 1.41 2.84 36.00 0.10 1.51 16 18 O -0.83 -26.95 14.97 -35.23 -0.53 -27.48 16 19 Si 0.85 20.24 26.84 -169.99 -4.56 15.67 16 20 H -0.28 -5.91 7.10 56.52 0.40 -5.50 16 21 H -0.26 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.14 -3.22 5.75 -106.46 -0.61 -3.83 16 24 C -0.06 -1.39 8.70 36.00 0.31 -1.08 16 25 C -0.01 -0.25 9.80 -40.43 -0.40 -0.65 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 31 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.42 5.17 7.94 -40.82 -0.32 4.85 16 33 H 0.01 0.30 7.96 -51.93 -0.41 -0.12 16 34 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.09 2.34 6.42 -51.93 -0.33 2.00 16 36 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 37 H 0.14 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 335.42 15.07 5.05 5.05 Total: -1.00 -36.78 335.42 -10.19 -46.97 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -3.67 Total: -4.41 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -4.59 Total: 1.01 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.15 Total: -26.08 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.45 Total: -38.17 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.56 Total: 15.67 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.13 Total: -0.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.78 -10.19 -46.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630445488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.089 kcal (2) G-P(sol) polarization free energy of solvation -36.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds