Wall clock time and date at job start Mon Mar 23 2020 11:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31332 * 125.51307 * 2 1 4 4 N 1.39919 * 108.83719 * 179.97438 * 3 2 1 5 5 C 1.37099 * 107.68340 * 0.02562 * 4 3 2 6 6 C 1.38767 * 125.51820 * 179.97438 * 2 1 3 7 7 N 1.34048 * 120.57400 * 179.97438 * 5 4 3 8 8 C 1.31462 * 120.99052 * 359.97438 * 7 5 4 9 9 C 1.39595 * 120.38359 * 359.68810 * 8 7 5 10 10 C 1.36745 * 119.36681 * 0.60455 * 9 8 7 11 11 N 1.38246 * 120.52063 * 179.70054 * 10 9 8 12 12 C 1.34774 * 119.99719 * 237.68039 * 11 10 9 13 13 O 1.21698 * 120.00060 * 355.22201 * 12 11 10 14 14 C 1.46496 * 119.99633 * 174.94484 * 12 11 10 15 15 S 1.75830 * 125.46357 * 359.97234 * 14 12 11 16 16 C 1.70619 * 91.56409 * 179.91004 * 15 14 12 17 17 C 1.50690 * 124.51955 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.47296 * 210.35046 * 17 16 15 19 19 Si 1.86299 * 109.47364 * 330.35360 * 17 16 15 20 20 H 1.48497 * 109.47092 * 59.99997 * 19 17 16 21 21 H 1.48501 * 109.47257 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46898 * 299.99750 * 19 17 16 23 23 C 1.33869 * 110.95450 * 0.35425 * 16 15 14 24 24 C 1.50695 * 122.44230 * 179.69822 * 23 16 15 25 25 C 1.36740 * 125.45783 * 180.27523 * 14 12 11 26 26 H 1.09003 * 109.47036 * 270.03768 * 1 2 3 27 27 H 1.08991 * 109.47277 * 30.03873 * 1 2 3 28 28 H 1.09004 * 109.46865 * 150.04066 * 1 2 3 29 29 H 1.08005 * 126.18127 * 0.02712 * 6 2 1 30 30 H 1.08004 * 119.80794 * 179.97438 * 8 7 5 31 31 H 1.07994 * 120.32253 * 180.32341 * 9 8 7 32 32 H 0.97001 * 119.99682 * 57.67317 * 11 10 9 33 33 H 1.09003 * 109.47293 * 90.35627 * 17 16 15 34 34 H 1.09001 * 109.47723 * 270.00047 * 24 23 16 35 35 H 1.09003 * 109.47486 * 30.00420 * 24 23 16 36 36 H 1.09001 * 109.47271 * 149.99993 * 24 23 16 37 37 H 1.07994 * 123.35354 * 0.02562 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2699 1.0690 0.0000 4 7 3.6103 0.6675 0.0006 5 6 3.6344 -0.7033 0.0004 6 6 2.3132 -1.1295 0.0005 7 7 4.8003 -1.3647 0.0003 8 6 5.9451 -0.7185 0.0000 9 6 5.9681 0.6773 -0.0069 10 6 4.7875 1.3674 -0.0007 11 7 4.7825 2.7498 -0.0011 12 6 4.1613 3.4216 0.9885 13 8 3.5314 2.8141 1.8342 14 6 4.2494 4.8826 1.0494 15 16 5.1232 5.9002 -0.0875 16 6 4.6663 7.3127 0.7536 17 6 5.0635 8.7104 0.3544 18 8 5.1595 9.5299 1.5211 19 14 6.7135 8.6644 -0.5095 20 1 6.6137 7.8128 -1.7220 21 1 7.1052 10.0419 -0.9024 22 1 7.7369 8.1019 0.4077 23 6 3.9139 7.0129 1.8194 24 6 3.3741 8.0679 2.7504 25 6 3.6701 5.6732 2.0030 26 1 -0.3633 0.0007 1.0277 27 1 -0.3633 0.8896 -0.5144 28 1 -0.3633 -0.8904 -0.5132 29 1 1.9741 -2.1549 0.0006 30 1 6.8734 -1.2707 0.0004 31 1 6.9091 1.2071 -0.0124 32 1 5.2260 3.2362 -0.7135 33 1 4.3123 9.1234 -0.3188 34 1 4.0910 8.2467 3.5517 35 1 3.2104 8.9922 2.1963 36 1 2.4302 7.7279 3.1766 37 1 3.0801 5.2833 2.8192 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630445488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:51:11 Heat of formation + Delta-G solvation = 31.086935 kcal Electronic energy + Delta-G solvation = -25103.985577 eV Core-core repulsion = 21360.422608 eV Total energy + Delta-G solvation = -3743.562970 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.078 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.48169 -41.28488 -39.42577 -39.00397 -36.91862 -34.29236 -33.85095 -32.65328 -31.07469 -30.23832 -29.16818 -29.15531 -26.77799 -24.85524 -23.91870 -23.38307 -22.27557 -21.50096 -19.93331 -19.57096 -18.82231 -18.64217 -17.60239 -17.28066 -16.83757 -16.44440 -16.18684 -15.88542 -15.82783 -15.19706 -15.01101 -14.67498 -14.44793 -14.34314 -14.02372 -13.97581 -13.68503 -13.29324 -13.22841 -12.98529 -12.91587 -12.71577 -12.42097 -12.29740 -12.08555 -12.04405 -11.98236 -11.63636 -11.49144 -11.09667 -10.97373 -10.41646 -9.63316 -9.29725 -8.91266 -8.36651 -7.66320 -0.73369 -0.46172 -0.13923 0.42042 0.79626 0.90189 1.27593 1.34830 1.43628 1.48912 1.50484 1.57725 1.99164 2.36821 2.49225 2.87920 3.15647 3.46386 3.79273 3.95642 4.01814 4.24357 4.25444 4.35153 4.42984 4.46425 4.65543 4.73189 4.77723 4.82900 4.86457 4.92918 5.00102 5.01107 5.06701 5.19344 5.23552 5.42768 5.54318 5.58934 5.84340 5.93342 6.40647 6.56970 6.65793 7.65882 Molecular weight = 331.08amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.003492 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.351952 B = 8016.206275 C = 8905.109822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.100 3.900 3 N -0.339 5.339 4 N -0.325 5.325 5 C 0.247 3.753 6 C -0.278 4.278 7 N -0.490 5.490 8 C 0.204 3.796 9 C -0.213 4.213 10 C 0.390 3.610 11 N -0.664 5.664 12 C 0.617 3.383 13 O -0.533 6.533 14 C -0.313 4.313 15 S 0.196 5.804 16 C -0.172 4.172 17 C 0.009 3.991 18 O -0.904 6.904 19 Si 0.900 3.100 20 H -0.226 1.226 21 H -0.274 1.274 22 H -0.281 1.281 23 C -0.149 4.149 24 C -0.054 4.054 25 C -0.026 4.026 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.182 0.818 30 H 0.239 0.761 31 H 0.212 0.788 32 H 0.435 0.565 33 H -0.005 1.005 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -22.400 -7.450 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 N -0.165 5.165 4 N -0.100 5.100 5 C 0.021 3.979 6 C -0.309 4.309 7 N -0.203 5.203 8 C 0.021 3.979 9 C -0.239 4.239 10 C 0.182 3.818 11 N -0.317 5.317 12 C 0.407 3.593 13 O -0.410 6.410 14 C -0.432 4.432 15 S 0.463 5.537 16 C -0.292 4.292 17 C -0.110 4.110 18 O -0.853 6.853 19 Si 0.725 3.275 20 H -0.151 1.151 21 H -0.199 1.199 22 H -0.207 1.207 23 C -0.159 4.159 24 C -0.113 4.113 25 C -0.061 4.061 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.199 0.801 30 H 0.255 0.745 31 H 0.229 0.771 32 H 0.277 0.723 33 H 0.012 0.988 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.287 -22.538 -8.342 24.066 hybrid contribution -0.959 1.375 1.431 2.204 sum 0.328 -21.162 -6.912 22.265 Atomic orbital electron populations 1.20415 0.83207 1.04924 1.04352 1.22995 0.99041 0.89752 0.94159 1.77887 0.83680 1.23107 1.31789 1.47657 1.06089 1.07904 1.48372 1.21155 0.96126 0.79324 1.01335 1.21199 0.87291 1.00976 1.21389 1.68332 0.96545 1.37285 1.18153 1.24185 0.97126 0.90750 0.85830 1.22365 0.96496 0.96408 1.08621 1.18143 0.83996 0.82981 0.96711 1.42884 1.57728 1.02910 1.28215 1.16965 0.76756 0.85359 0.80232 1.90844 1.40573 1.69336 1.40206 1.23900 1.16803 0.95194 1.07315 1.81919 1.49400 0.94508 1.27908 1.26417 0.99498 1.03740 0.99518 1.23036 1.00939 0.86769 1.00234 1.94913 1.92061 1.62772 1.35519 0.86771 0.82889 0.80114 0.77681 1.15111 1.19914 1.20673 1.18806 1.03301 0.94545 0.99227 1.20145 0.97925 0.96491 0.96697 1.20673 0.96667 0.91257 0.97511 0.89182 0.90839 0.86976 0.80054 0.74517 0.77077 0.72278 0.98805 0.93900 0.92528 0.91955 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.43 71.24 0.74 -0.56 16 2 C 0.10 2.78 7.16 42.76 0.31 3.09 16 3 N -0.34 -11.79 11.54 -47.82 -0.55 -12.34 16 4 N -0.33 -10.21 3.56 -190.37 -0.68 -10.89 16 5 C 0.25 7.03 7.92 133.13 1.05 8.09 16 6 C -0.28 -7.29 10.83 22.54 0.24 -7.05 16 7 N -0.49 -11.10 10.49 -192.95 -2.02 -13.13 16 8 C 0.20 2.81 11.25 85.08 0.96 3.77 16 9 C -0.21 -3.29 9.97 22.25 0.22 -3.07 16 10 C 0.39 10.13 6.58 131.34 0.86 10.99 16 11 N -0.66 -17.96 5.26 -311.54 -1.64 -19.60 16 12 C 0.62 21.86 7.55 86.40 0.65 22.51 16 13 O -0.53 -22.46 15.60 -4.34 -0.07 -22.53 16 14 C -0.31 -11.76 6.45 24.07 0.16 -11.60 16 15 S 0.20 7.13 19.79 -56.49 -1.12 6.01 16 16 C -0.17 -8.34 5.57 24.69 0.14 -8.20 16 17 C 0.01 0.51 2.84 71.23 0.20 0.71 16 18 O -0.90 -61.90 14.97 -148.98 -2.23 -64.13 16 19 Si 0.90 41.19 26.84 68.60 1.84 43.03 16 20 H -0.23 -8.14 7.10 99.48 0.71 -7.43 16 21 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 23 C -0.15 -7.07 5.75 -21.06 -0.12 -7.20 16 24 C -0.05 -2.59 8.70 71.23 0.62 -1.97 16 25 C -0.03 -1.09 9.80 21.72 0.21 -0.88 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.24 0.53 8.06 -2.91 -0.02 0.51 16 31 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.43 9.11 7.94 -92.71 -0.74 8.37 16 33 H 0.00 -0.26 7.96 -2.39 -0.02 -0.28 16 34 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 3.10 6.42 -2.39 -0.02 3.09 16 36 H 0.06 2.46 8.13 -2.39 -0.02 2.45 16 37 H 0.15 5.82 8.06 -2.91 -0.02 5.80 16 Total: -1.00 -86.96 335.42 0.94 -86.02 By element: Atomic # 1 Polarization: -2.24 SS G_CDS: 1.16 Total: -1.08 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.25 Total: 8.64 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -4.89 Total: -55.96 kcal Atomic # 8 Polarization: -84.36 SS G_CDS: -2.30 Total: -86.66 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.84 Total: 43.03 kcal Atomic # 16 Polarization: 7.13 SS G_CDS: -1.12 Total: 6.01 kcal Total: -86.96 0.94 -86.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630445488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.105 kcal (2) G-P(sol) polarization free energy of solvation -86.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds