Wall clock time and date at job start Mon Mar 23 2020 11:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37427 * 122.44979 * 2 1 4 4 C 1.36706 * 113.29493 * 180.16795 * 3 2 1 5 5 C 1.46533 * 125.46191 * 179.86365 * 4 3 2 6 6 O 1.21710 * 119.99592 * 359.71491 * 5 4 3 7 7 N 1.34776 * 120.00228 * 179.72153 * 5 4 3 8 8 C 1.39623 * 119.99996 * 184.58962 * 7 5 4 9 9 C 1.39035 * 119.95423 * 324.59488 * 8 7 5 10 10 C 1.37820 * 120.04806 * 180.27797 * 9 8 7 11 11 C 1.39428 * 119.95323 * 0.02562 * 10 9 8 12 12 C 1.48324 * 120.04600 * 179.97438 * 11 10 9 13 13 N 1.30813 * 126.42177 * 180.02562 * 12 11 10 14 14 O 1.21287 * 110.08837 * 180.02562 * 13 12 11 15 15 C 1.33671 * 110.03912 * 359.97438 * 14 13 12 16 16 N 1.30970 * 107.13310 * 359.73090 * 15 14 13 17 17 C 1.39423 * 119.90722 * 359.97438 * 11 10 9 18 18 C 1.37824 * 119.94878 * 0.02562 * 17 11 10 19 19 S 1.75833 * 109.08149 * 359.60115 * 4 3 2 20 20 C 1.33857 * 122.44383 * 179.72070 * 2 1 3 21 21 C 1.50701 * 124.52321 * 0.02562 * 20 2 1 22 22 O 1.42897 * 109.46990 * 94.93624 * 21 20 2 23 23 Si 1.86300 * 109.47120 * 214.93981 * 21 20 2 24 24 H 1.48493 * 109.47446 * 59.99676 * 23 21 20 25 25 H 1.48499 * 109.46869 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46861 * 299.99701 * 23 21 20 27 27 H 1.09001 * 109.47274 * 265.24956 * 1 2 3 28 28 H 1.08999 * 109.46915 * 25.24467 * 1 2 3 29 29 H 1.08995 * 109.47675 * 145.24175 * 1 2 3 30 30 H 1.07996 * 123.35213 * 359.97438 * 3 2 1 31 31 H 0.97004 * 119.99602 * 4.58539 * 7 5 4 32 32 H 1.08000 * 119.97091 * 0.26437 * 9 8 7 33 33 H 1.07998 * 120.02502 * 180.02562 * 10 9 8 34 34 H 1.07995 * 126.43278 * 180.02562 * 15 14 13 35 35 H 1.08001 * 120.02437 * 180.02562 * 17 11 10 36 36 H 1.08006 * 119.97233 * 179.97438 * 18 17 11 37 37 H 1.08996 * 109.46661 * 334.93940 * 21 20 2 38 38 H 0.96701 * 114.00094 * 60.00535 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2443 1.1597 0.0000 4 6 3.5940 0.9422 -0.0037 5 6 4.6231 1.9853 -0.0074 6 8 4.3002 3.1587 -0.0127 7 7 5.9273 1.6452 -0.0052 8 6 6.9069 2.6358 0.0880 9 6 6.7091 3.8676 -0.5256 10 6 7.6772 4.8448 -0.4396 11 6 8.8559 4.5971 0.2628 12 6 9.8994 5.6470 0.3561 13 7 11.0456 5.5497 0.9788 14 8 11.6699 6.5835 0.8665 15 6 10.9706 7.4647 0.1445 16 7 9.8468 6.8824 -0.1920 17 6 9.0522 3.3611 0.8773 18 6 8.0815 2.3868 0.7889 19 16 3.8971 -0.7898 0.0044 20 6 2.2250 -1.1296 0.0055 21 6 1.6354 -2.5165 0.0117 22 8 1.5562 -3.0064 -1.3283 23 14 2.7171 -3.6467 1.0233 24 1 2.7994 -3.1375 2.4158 25 1 2.1364 -5.0134 1.0289 26 1 4.0782 -3.6901 0.4309 27 1 -0.3634 -0.0851 1.0241 28 1 -0.3633 0.9295 -0.4383 29 1 -0.3634 -0.8442 -0.5858 30 1 1.8016 2.1448 -0.0004 31 1 6.1853 0.7122 -0.0683 32 1 5.7962 4.0588 -1.0701 33 1 7.5230 5.8017 -0.9160 34 1 11.2771 8.4667 -0.1167 35 1 9.9643 3.1674 1.4222 36 1 8.2334 1.4290 1.2645 37 1 0.6364 -2.4845 0.4465 38 1 2.4105 -3.0616 -1.7780 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292606122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:01 Heat of formation + Delta-G solvation = 61.051139 kcal Electronic energy + Delta-G solvation = -25774.567135 eV Core-core repulsion = 21792.702969 eV Total energy + Delta-G solvation = -3981.864166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.52074 -41.74559 -40.18358 -39.46208 -37.66402 -36.96114 -35.83213 -33.59704 -32.64942 -32.08219 -30.66294 -30.02938 -27.15814 -25.51832 -25.28036 -24.30245 -23.58470 -22.72831 -21.68974 -20.44679 -19.60806 -19.37215 -19.02125 -18.77257 -17.82080 -17.41934 -17.17125 -16.63398 -16.50885 -16.36690 -16.06351 -15.73085 -15.32432 -15.08597 -14.90638 -14.69419 -14.47434 -14.37718 -14.19273 -13.78405 -13.59895 -13.29127 -13.20779 -13.13119 -12.93118 -12.58213 -12.54218 -12.45364 -12.31909 -12.04437 -11.84133 -11.75333 -11.22394 -10.97649 -10.77521 -10.03162 -9.96037 -9.61664 -9.15381 -0.84363 -0.34153 0.13251 0.34212 0.38355 0.52190 0.87991 1.09067 1.18686 1.33846 1.45121 1.71775 1.73684 1.98609 2.03042 2.57786 2.77317 3.06392 3.18758 3.40961 3.49680 3.84000 3.89357 3.96680 4.03774 4.12533 4.25163 4.32369 4.37796 4.41996 4.46190 4.58382 4.61716 4.68064 4.83826 4.87816 4.98436 5.10904 5.16744 5.19931 5.27313 5.34247 5.44594 5.84401 6.07246 6.26874 6.81194 7.15299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.086 4.086 3 C -0.038 4.038 4 C -0.263 4.263 5 C 0.595 3.405 6 O -0.501 6.501 7 N -0.671 5.671 8 C 0.166 3.834 9 C -0.122 4.122 10 C -0.053 4.053 11 C -0.041 4.041 12 C 0.215 3.785 13 N -0.376 5.376 14 O 0.081 5.919 15 C 0.168 3.832 16 N -0.481 5.481 17 C -0.061 4.061 18 C -0.145 4.145 19 S 0.184 5.816 20 C -0.229 4.229 21 C -0.045 4.045 22 O -0.529 6.529 23 Si 0.907 3.093 24 H -0.238 1.238 25 H -0.230 1.230 26 H -0.234 1.234 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.159 0.841 31 H 0.411 0.589 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.266 0.734 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 -2.407 -0.244 2.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.071 4.071 4 C -0.383 4.383 5 C 0.383 3.617 6 O -0.376 6.376 7 N -0.315 5.315 8 C 0.071 3.929 9 C -0.142 4.142 10 C -0.073 4.073 11 C -0.044 4.044 12 C -0.054 4.054 13 N -0.082 5.082 14 O 0.021 5.979 15 C -0.073 4.073 16 N -0.213 5.213 17 C -0.082 4.082 18 C -0.165 4.165 19 S 0.453 5.547 20 C -0.348 4.348 21 C -0.157 4.157 22 O -0.334 6.334 23 Si 0.726 3.274 24 H -0.161 1.161 25 H -0.152 1.152 26 H -0.157 1.157 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.177 0.823 31 H 0.247 0.753 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.282 0.718 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.383 -3.835 0.644 4.127 hybrid contribution -0.701 1.139 -0.430 1.405 sum 0.681 -2.696 0.214 2.789 Atomic orbital electron populations 1.20637 0.88671 1.03839 1.02942 1.18739 0.98382 0.90621 1.02201 1.20768 0.90683 1.00342 0.95327 1.24319 0.97750 0.96627 1.19606 1.16992 0.81108 0.87757 0.75830 1.90875 1.81198 1.17919 1.47656 1.43291 1.04939 1.09955 1.73334 1.17836 0.88880 0.89854 0.96365 1.21261 1.00506 0.92371 1.00106 1.21114 0.90879 0.99561 0.95778 1.17348 0.92326 0.91145 1.03546 1.23959 0.93226 0.92466 0.95786 1.74936 1.07417 1.04381 1.21478 1.85311 1.41250 1.17362 1.54003 1.30510 0.86416 0.99577 0.90825 1.72000 1.21206 1.05201 1.22933 1.20935 0.98978 0.91145 0.97105 1.20813 0.93834 1.00897 1.00987 1.82983 1.04023 0.98487 1.69169 1.24441 0.97951 1.01209 1.11229 1.24499 1.08295 0.91909 0.91034 1.86578 1.35346 1.86396 1.25113 0.86190 0.79340 0.81261 0.80636 1.16102 1.15191 1.15669 0.90605 0.90848 0.90424 0.82328 0.75292 0.83370 0.84124 0.71830 0.84540 0.84639 0.85231 0.77594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.18 9.41 36.00 0.34 0.52 16 2 C -0.09 0.02 5.78 -106.46 -0.62 -0.59 16 3 C -0.04 -0.02 9.78 -40.43 -0.40 -0.42 16 4 C -0.26 -0.19 6.45 -36.79 -0.24 -0.43 16 5 C 0.60 1.33 7.62 -12.92 -0.10 1.24 16 6 O -0.50 -2.63 14.27 5.18 0.07 -2.56 16 7 N -0.67 -0.20 5.31 -11.07 -0.06 -0.26 16 8 C 0.17 0.27 6.29 -83.72 -0.53 -0.26 16 9 C -0.12 -0.34 8.68 -39.44 -0.34 -0.68 16 10 C -0.05 -0.14 9.69 -39.29 -0.38 -0.53 16 11 C -0.04 -0.13 5.88 -104.86 -0.62 -0.74 16 12 C 0.21 0.78 7.80 -156.09 -1.22 -0.44 16 13 N -0.38 -1.34 11.85 30.96 0.37 -0.97 16 14 O 0.08 0.09 11.29 18.03 0.20 0.30 16 15 C 0.17 -0.21 13.39 52.06 0.70 0.49 16 16 N -0.48 -1.18 11.25 -13.72 -0.15 -1.34 16 17 C -0.06 -0.10 9.68 -39.29 -0.38 -0.48 16 18 C -0.15 -0.07 9.95 -39.44 -0.39 -0.46 16 19 S 0.18 -0.26 19.99 -107.50 -2.15 -2.41 16 20 C -0.23 0.20 5.20 -35.85 -0.19 0.01 16 21 C -0.04 0.08 2.45 36.01 0.09 0.17 16 22 O -0.53 0.62 12.88 -35.23 -0.45 0.16 16 23 Si 0.91 -1.73 26.74 -169.99 -4.55 -6.27 16 24 H -0.24 0.22 7.11 56.52 0.40 0.62 16 25 H -0.23 0.18 7.11 56.52 0.40 0.58 16 26 H -0.23 0.54 7.11 56.52 0.40 0.94 16 27 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 28 H 0.07 -0.16 8.11 -51.93 -0.42 -0.58 16 29 H 0.08 -0.13 7.37 -51.93 -0.38 -0.51 16 30 H 0.16 0.04 8.06 -52.49 -0.42 -0.39 16 31 H 0.41 -1.00 7.94 -40.82 -0.32 -1.32 16 32 H 0.15 0.50 6.22 -52.49 -0.33 0.17 16 33 H 0.14 0.30 7.87 -52.49 -0.41 -0.11 16 34 H 0.27 -1.90 8.06 -52.49 -0.42 -2.32 16 35 H 0.14 0.12 7.86 -52.49 -0.41 -0.29 16 36 H 0.14 -0.29 8.06 -52.48 -0.42 -0.71 16 37 H 0.13 -0.36 6.94 -51.93 -0.36 -0.72 16 38 H 0.38 -1.62 8.70 45.56 0.40 -1.22 16 LS Contribution 346.28 15.07 5.22 5.22 Total: 0.00 -8.71 346.28 -8.50 -17.21 By element: Atomic # 1 Polarization: -3.73 SS G_CDS: -2.73 Total: -6.46 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -4.27 Total: -2.61 kcal Atomic # 7 Polarization: -2.73 SS G_CDS: 0.15 Total: -2.58 kcal Atomic # 8 Polarization: -1.92 SS G_CDS: -0.18 Total: -2.10 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: -4.55 Total: -6.27 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -2.15 Total: -2.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -8.71 -8.50 -17.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292606122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.260 kcal (2) G-P(sol) polarization free energy of solvation -8.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds