Wall clock time and date at job start Mon Mar 23 2020 11:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37427 * 122.44979 * 2 1 4 4 C 1.36706 * 113.29493 * 180.16795 * 3 2 1 5 5 C 1.46533 * 125.46191 * 179.86365 * 4 3 2 6 6 O 1.21710 * 119.99592 * 359.71491 * 5 4 3 7 7 N 1.34776 * 120.00228 * 179.72153 * 5 4 3 8 8 C 1.39623 * 119.99996 * 184.58962 * 7 5 4 9 9 C 1.39035 * 119.95423 * 324.59488 * 8 7 5 10 10 C 1.37820 * 120.04806 * 180.27797 * 9 8 7 11 11 C 1.39428 * 119.95323 * 0.02562 * 10 9 8 12 12 C 1.48324 * 120.04600 * 179.97438 * 11 10 9 13 13 N 1.30813 * 126.42177 * 180.02562 * 12 11 10 14 14 O 1.21287 * 110.08837 * 180.02562 * 13 12 11 15 15 C 1.33671 * 110.03912 * 359.97438 * 14 13 12 16 16 N 1.30970 * 107.13310 * 359.73090 * 15 14 13 17 17 C 1.39423 * 119.90722 * 359.97438 * 11 10 9 18 18 C 1.37824 * 119.94878 * 0.02562 * 17 11 10 19 19 S 1.75833 * 109.08149 * 359.60115 * 4 3 2 20 20 C 1.33857 * 122.44383 * 179.72070 * 2 1 3 21 21 C 1.50701 * 124.52321 * 0.02562 * 20 2 1 22 22 O 1.42897 * 109.46990 * 94.93624 * 21 20 2 23 23 Si 1.86300 * 109.47120 * 214.93981 * 21 20 2 24 24 H 1.48493 * 109.47446 * 59.99676 * 23 21 20 25 25 H 1.48499 * 109.46869 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46861 * 299.99701 * 23 21 20 27 27 H 1.09001 * 109.47274 * 265.24956 * 1 2 3 28 28 H 1.08999 * 109.46915 * 25.24467 * 1 2 3 29 29 H 1.08995 * 109.47675 * 145.24175 * 1 2 3 30 30 H 1.07996 * 123.35213 * 359.97438 * 3 2 1 31 31 H 0.97004 * 119.99602 * 4.58539 * 7 5 4 32 32 H 1.08000 * 119.97091 * 0.26437 * 9 8 7 33 33 H 1.07998 * 120.02502 * 180.02562 * 10 9 8 34 34 H 1.07995 * 126.43278 * 180.02562 * 15 14 13 35 35 H 1.08001 * 120.02437 * 180.02562 * 17 11 10 36 36 H 1.08006 * 119.97233 * 179.97438 * 18 17 11 37 37 H 1.08996 * 109.46661 * 334.93940 * 21 20 2 38 38 H 0.96701 * 114.00094 * 60.00535 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2443 1.1597 0.0000 4 6 3.5940 0.9422 -0.0037 5 6 4.6231 1.9853 -0.0074 6 8 4.3002 3.1587 -0.0127 7 7 5.9273 1.6452 -0.0052 8 6 6.9069 2.6358 0.0880 9 6 6.7091 3.8676 -0.5256 10 6 7.6772 4.8448 -0.4396 11 6 8.8559 4.5971 0.2628 12 6 9.8994 5.6470 0.3561 13 7 11.0456 5.5497 0.9788 14 8 11.6699 6.5835 0.8665 15 6 10.9706 7.4647 0.1445 16 7 9.8468 6.8824 -0.1920 17 6 9.0522 3.3611 0.8773 18 6 8.0815 2.3868 0.7889 19 16 3.8971 -0.7898 0.0044 20 6 2.2250 -1.1296 0.0055 21 6 1.6354 -2.5165 0.0117 22 8 1.5562 -3.0064 -1.3283 23 14 2.7171 -3.6467 1.0233 24 1 2.7994 -3.1375 2.4158 25 1 2.1364 -5.0134 1.0289 26 1 4.0782 -3.6901 0.4309 27 1 -0.3634 -0.0851 1.0241 28 1 -0.3633 0.9295 -0.4383 29 1 -0.3634 -0.8442 -0.5858 30 1 1.8016 2.1448 -0.0004 31 1 6.1853 0.7122 -0.0683 32 1 5.7962 4.0588 -1.0701 33 1 7.5230 5.8017 -0.9160 34 1 11.2771 8.4667 -0.1167 35 1 9.9643 3.1674 1.4222 36 1 8.2334 1.4290 1.2645 37 1 0.6364 -2.4845 0.4465 38 1 2.4105 -3.0616 -1.7780 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292606122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:00 Heat of formation + Delta-G solvation = 60.229351 kcal Electronic energy + Delta-G solvation = -25774.602771 eV Core-core repulsion = 21792.702969 eV Total energy + Delta-G solvation = -3981.899802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.61733 -41.87563 -40.19683 -39.52244 -37.56363 -37.06824 -35.96608 -33.69373 -32.63887 -32.20522 -30.75969 -29.90885 -27.18230 -25.59025 -25.30742 -24.29439 -23.68557 -22.79238 -21.78056 -20.39781 -19.62056 -19.41763 -19.13403 -18.83472 -17.75316 -17.41297 -17.26619 -16.70805 -16.50118 -16.40765 -15.96577 -15.74661 -15.41423 -15.14876 -14.86307 -14.66200 -14.48316 -14.35158 -14.32234 -13.88016 -13.50727 -13.33675 -13.14777 -13.13449 -12.98465 -12.58231 -12.44785 -12.42735 -12.23392 -12.15248 -11.91926 -11.68830 -11.38572 -11.10478 -10.64150 -10.16499 -9.93890 -9.53009 -9.26933 -0.86795 -0.45984 0.17962 0.22111 0.39352 0.57980 0.99244 1.10605 1.33464 1.34234 1.47813 1.65393 1.86730 1.90045 2.11678 2.55559 2.63634 3.02463 3.35338 3.42353 3.62001 3.77027 3.80285 4.00856 4.02264 4.13929 4.21890 4.29457 4.34238 4.42727 4.56528 4.67224 4.70925 4.78274 4.81322 4.87894 4.95503 5.03022 5.07020 5.21714 5.27938 5.30530 5.36507 5.71286 6.03714 6.57077 6.72159 7.11144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.098 4.098 3 C -0.046 4.046 4 C -0.284 4.284 5 C 0.594 3.406 6 O -0.540 6.540 7 N -0.658 5.658 8 C 0.159 3.841 9 C -0.133 4.133 10 C -0.060 4.060 11 C -0.056 4.056 12 C 0.198 3.802 13 N -0.398 5.398 14 O 0.079 5.921 15 C 0.192 3.808 16 N -0.517 5.517 17 C -0.065 4.065 18 C -0.134 4.134 19 S 0.230 5.770 20 C -0.231 4.231 21 C -0.043 4.043 22 O -0.542 6.542 23 Si 0.929 3.071 24 H -0.252 1.252 25 H -0.246 1.246 26 H -0.223 1.223 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.425 0.575 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.319 0.681 35 H 0.144 0.856 36 H 0.167 0.833 37 H 0.138 0.862 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 -3.296 -0.069 3.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.111 4.111 3 C -0.080 4.080 4 C -0.404 4.404 5 C 0.383 3.617 6 O -0.418 6.418 7 N -0.304 5.304 8 C 0.063 3.937 9 C -0.153 4.153 10 C -0.080 4.080 11 C -0.059 4.059 12 C -0.071 4.071 13 N -0.105 5.105 14 O 0.019 5.981 15 C -0.047 4.047 16 N -0.249 5.249 17 C -0.085 4.085 18 C -0.153 4.153 19 S 0.500 5.500 20 C -0.351 4.351 21 C -0.156 4.156 22 O -0.349 6.349 23 Si 0.749 3.251 24 H -0.175 1.175 25 H -0.169 1.169 26 H -0.146 1.146 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.171 0.829 31 H 0.264 0.736 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.334 0.666 35 H 0.162 0.838 36 H 0.185 0.815 37 H 0.155 0.845 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.140 -4.748 0.800 5.270 hybrid contribution -0.897 1.429 -0.495 1.758 sum 1.243 -3.320 0.306 3.558 Atomic orbital electron populations 1.20663 0.87826 1.03950 1.03576 1.18859 0.99141 0.90410 1.02643 1.20862 0.90958 1.00643 0.95513 1.24278 0.97440 0.97852 1.20797 1.17243 0.81768 0.87580 0.75121 1.90854 1.81831 1.19541 1.49597 1.43177 1.04178 1.10484 1.72529 1.17942 0.89530 0.89745 0.96455 1.21225 1.00117 0.93254 1.00753 1.21080 0.91126 0.99567 0.96271 1.17555 0.92427 0.91896 1.03994 1.24152 0.93518 0.93115 0.96315 1.74915 1.07646 1.05652 1.22312 1.85264 1.41181 1.17317 1.54368 1.31636 0.84730 1.00291 0.88066 1.71994 1.23166 1.05317 1.24387 1.21106 0.99553 0.90916 0.96960 1.21083 0.92608 1.01767 0.99882 1.82728 1.03235 0.96077 1.67998 1.24702 0.98503 1.01585 1.10311 1.24569 1.08902 0.91146 0.90952 1.86554 1.36700 1.86317 1.25367 0.85883 0.79557 0.79972 0.79701 1.17502 1.16896 1.14566 0.89686 0.90736 0.90316 0.82870 0.73632 0.84596 0.84453 0.66625 0.83794 0.81537 0.84452 0.76111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.35 9.41 71.23 0.67 1.02 16 2 C -0.10 0.04 5.78 -21.05 -0.12 -0.08 16 3 C -0.05 -0.10 9.78 21.72 0.21 0.11 16 4 C -0.28 -0.58 6.45 24.08 0.16 -0.43 16 5 C 0.59 3.36 7.62 86.41 0.66 4.01 16 6 O -0.54 -6.91 14.27 -4.38 -0.06 -6.97 16 7 N -0.66 -0.60 5.31 -307.15 -1.63 -2.23 16 8 C 0.16 0.62 6.29 38.28 0.24 0.86 16 9 C -0.13 -1.01 8.68 22.36 0.19 -0.81 16 10 C -0.06 -0.46 9.69 22.46 0.22 -0.24 16 11 C -0.06 -0.43 5.88 -20.02 -0.12 -0.55 16 12 C 0.20 1.67 7.80 137.24 1.07 2.74 16 13 N -0.40 -3.11 11.85 -59.10 -0.70 -3.81 16 14 O 0.08 0.17 11.29 74.60 0.84 1.01 16 15 C 0.19 -0.64 13.39 130.49 1.75 1.11 16 16 N -0.52 -2.84 11.25 -314.62 -3.54 -6.38 16 17 C -0.06 -0.25 9.68 22.46 0.22 -0.03 16 18 C -0.13 -0.09 9.95 22.36 0.22 0.14 16 19 S 0.23 -0.84 19.99 -56.49 -1.13 -1.97 16 20 C -0.23 0.53 5.20 24.69 0.13 0.66 16 21 C -0.04 0.19 2.45 71.24 0.17 0.37 16 22 O -0.54 1.76 12.88 -148.98 -1.92 -0.16 16 23 Si 0.93 -4.29 26.74 68.60 1.83 -2.46 16 24 H -0.25 0.59 7.11 99.48 0.71 1.30 16 25 H -0.25 0.45 7.11 99.48 0.71 1.15 16 26 H -0.22 1.43 7.11 99.48 0.71 2.14 16 27 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.07 -0.28 8.11 -2.39 -0.02 -0.30 16 29 H 0.08 -0.28 7.37 -2.39 -0.02 -0.30 16 30 H 0.15 0.38 8.06 -2.91 -0.02 0.35 16 31 H 0.42 -2.34 7.94 -92.71 -0.74 -3.08 16 32 H 0.14 1.33 6.22 -2.91 -0.02 1.31 16 33 H 0.14 0.98 7.87 -2.91 -0.02 0.96 16 34 H 0.32 -5.40 8.06 -2.91 -0.02 -5.42 16 35 H 0.14 0.29 7.86 -2.91 -0.02 0.27 16 36 H 0.17 -1.02 8.06 -2.91 -0.02 -1.04 16 37 H 0.14 -0.86 6.94 -2.39 -0.02 -0.87 16 38 H 0.39 -3.79 8.70 -74.06 -0.64 -4.43 16 Total: 0.00 -22.44 346.28 -0.10 -22.54 By element: Atomic # 1 Polarization: -8.97 SS G_CDS: 0.53 Total: -8.44 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.67 Total: 8.86 kcal Atomic # 7 Polarization: -6.55 SS G_CDS: -5.87 Total: -12.43 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -1.14 Total: -6.12 kcal Atomic # 14 Polarization: -4.29 SS G_CDS: 1.83 Total: -2.46 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -1.13 Total: -1.97 kcal Total: -22.44 -0.10 -22.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292606122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.770 kcal (2) G-P(sol) polarization free energy of solvation -22.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds