Wall clock time and date at job start Mon Mar 23 2020 11:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37423 * 122.44496 * 2 1 4 4 C 1.36712 * 113.29185 * 179.72904 * 3 2 1 5 5 C 1.46537 * 125.45788 * 180.24708 * 4 3 2 6 6 O 1.21712 * 119.99901 * 0.02562 * 5 4 3 7 7 N 1.34767 * 119.99791 * 179.97438 * 5 4 3 8 8 C 1.39759 * 120.00067 * 180.02562 * 7 5 4 9 9 N 1.31316 * 125.47614 * 359.69125 * 8 7 5 10 10 N 1.40437 * 106.93478 * 179.85777 * 9 8 7 11 11 C 1.35192 * 106.35641 * 0.40753 * 10 9 8 12 12 C 1.48005 * 126.02911 * 179.77659 * 11 10 9 13 13 C 1.39903 * 120.92440 * 359.72272 * 12 11 10 14 14 C 1.37977 * 119.00460 * 179.70967 * 13 12 11 15 15 N 1.31913 * 120.89917 * 0.57177 * 14 13 12 16 16 C 1.31919 * 122.04131 * 359.72107 * 15 14 13 17 17 C 1.37987 * 120.89368 * 359.97166 * 16 15 14 18 18 N 1.31765 * 107.93408 * 359.75058 * 11 10 9 19 19 S 1.75827 * 109.07811 * 0.24628 * 4 3 2 20 20 C 1.33850 * 122.44609 * 180.20387 * 2 1 3 21 21 C 1.50703 * 124.52020 * 0.02562 * 20 2 1 22 22 O 1.42889 * 109.47435 * 30.26129 * 21 20 2 23 23 Si 1.86306 * 109.46701 * 150.26129 * 21 20 2 24 24 H 1.48498 * 109.47329 * 59.99824 * 23 21 20 25 25 H 1.48500 * 109.46901 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47084 * 299.99552 * 23 21 20 27 27 H 1.09004 * 109.46758 * 90.02540 * 1 2 3 28 28 H 1.08997 * 109.47151 * 210.02207 * 1 2 3 29 29 H 1.09001 * 109.47240 * 330.02971 * 1 2 3 30 30 H 1.08002 * 123.35740 * 0.02562 * 3 2 1 31 31 H 0.97006 * 120.00629 * 0.02562 * 7 5 4 32 32 H 0.96992 * 126.82482 * 180.13728 * 10 9 8 33 33 H 1.08004 * 120.49498 * 359.97438 * 13 12 11 34 34 H 1.08006 * 119.55368 * 180.26798 * 14 13 12 35 35 H 1.07997 * 119.55512 * 180.02562 * 16 15 14 36 36 H 1.07999 * 120.50025 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.47178 * 270.25509 * 21 20 2 38 38 H 0.96698 * 114.00482 * 59.99458 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2443 1.1597 0.0000 4 6 3.5940 0.9423 0.0059 5 6 4.6231 1.9854 0.0125 6 8 4.3001 3.1589 0.0135 7 7 5.9272 1.6454 0.0186 8 6 6.9087 2.6403 0.0254 9 7 6.6827 3.9339 0.0209 10 7 7.9357 4.5681 0.0342 11 6 8.8612 3.5826 0.0370 12 6 10.3296 3.7675 0.0452 13 6 10.8931 5.0480 0.0452 14 6 12.2670 5.1744 0.0591 15 7 13.0453 4.1093 0.0611 16 6 12.5553 2.8844 0.0553 17 6 11.1928 2.6665 0.0476 18 7 8.2251 2.4287 0.0317 19 16 3.8971 -0.7897 0.0044 20 6 2.2252 -1.1295 -0.0040 21 6 1.6355 -2.5164 -0.0095 22 8 0.3786 -2.4970 -0.6888 23 14 2.7965 -3.6813 -0.8848 24 1 4.1028 -3.7015 -0.1789 25 1 2.2152 -5.0478 -0.8908 26 1 2.9965 -3.2229 -2.2831 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 1.8016 2.1448 0.0004 31 1 6.1847 0.7102 0.0182 32 1 8.1038 5.5233 0.0365 33 1 10.2621 5.9245 0.0387 34 1 12.7114 6.1587 0.0636 35 1 13.2297 2.0409 0.0576 36 1 10.7985 1.6610 0.0434 37 1 1.4887 -2.8529 1.0168 38 1 0.4335 -2.2066 -1.6095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442715352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:04 Heat of formation + Delta-G solvation = 99.549170 kcal Electronic energy + Delta-G solvation = -25785.356550 eV Core-core repulsion = 21837.454535 eV Total energy + Delta-G solvation = -3947.902015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.40628 -41.23423 -40.87780 -39.90973 -37.47711 -36.29015 -34.55862 -33.55486 -32.41117 -32.24400 -30.94982 -30.31918 -27.04769 -25.95093 -25.02070 -24.58601 -23.32596 -22.21517 -21.49470 -20.38191 -19.91442 -19.44489 -18.26947 -17.76132 -17.46007 -17.23110 -17.17810 -16.97975 -16.84236 -16.54538 -16.16487 -15.91782 -15.56918 -14.99845 -14.98934 -14.95098 -14.86258 -14.60150 -14.17527 -13.58134 -13.41428 -13.20105 -13.11304 -12.80762 -12.67440 -12.57389 -12.37552 -12.21215 -11.86102 -11.77069 -11.45155 -11.20397 -10.80534 -10.71718 -10.69279 -10.38345 -9.93228 -9.76425 -9.51913 -0.77943 -0.64989 -0.06574 0.14613 0.56436 0.71652 0.90144 1.00881 1.18427 1.25149 1.32194 1.53890 1.64340 1.76040 2.22107 2.67834 2.76935 3.16158 3.19319 3.29930 3.44813 3.52940 3.67612 3.79232 3.92533 4.01403 4.14319 4.19205 4.32935 4.37864 4.52333 4.61222 4.62937 4.71231 4.78441 4.83461 4.96230 4.97933 5.30723 5.34125 5.40275 5.41920 5.63614 5.90833 6.29357 6.75831 6.78090 6.92863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.092 4.092 3 C -0.034 4.034 4 C -0.265 4.265 5 C 0.595 3.405 6 O -0.471 6.471 7 N -0.623 5.623 8 C 0.449 3.551 9 N -0.272 5.272 10 N -0.466 5.466 11 C 0.342 3.658 12 C 0.010 3.990 13 C -0.152 4.152 14 C 0.108 3.892 15 N -0.471 5.471 16 C 0.106 3.894 17 C -0.119 4.119 18 N -0.534 5.534 19 S 0.192 5.808 20 C -0.230 4.230 21 C -0.040 4.040 22 O -0.527 6.527 23 Si 0.903 3.097 24 H -0.231 1.231 25 H -0.228 1.228 26 H -0.239 1.239 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.159 0.841 31 H 0.423 0.577 32 H 0.447 0.553 33 H 0.138 0.862 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.153 0.847 37 H 0.130 0.870 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 -2.536 -0.566 2.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.068 4.068 4 C -0.385 4.385 5 C 0.381 3.619 6 O -0.341 6.341 7 N -0.277 5.277 8 C 0.079 3.921 9 N -0.109 5.109 10 N -0.186 5.186 11 C 0.066 3.934 12 C -0.001 4.001 13 C -0.174 4.174 14 C -0.049 4.049 15 N -0.180 5.180 16 C -0.051 4.051 17 C -0.141 4.141 18 N -0.267 5.267 19 S 0.461 5.539 20 C -0.350 4.350 21 C -0.153 4.153 22 O -0.333 6.333 23 Si 0.722 3.278 24 H -0.154 1.154 25 H -0.150 1.150 26 H -0.161 1.161 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.176 0.824 31 H 0.262 0.738 32 H 0.294 0.706 33 H 0.155 0.845 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.171 0.829 37 H 0.147 0.853 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.803 -3.369 -0.419 4.403 hybrid contribution -1.898 1.459 -0.243 2.406 sum 0.905 -1.911 -0.662 2.216 Atomic orbital electron populations 1.20653 0.88217 1.03603 1.02939 1.18711 0.98639 0.90279 1.02859 1.20764 0.90486 1.00452 0.95084 1.24138 0.97363 0.96595 1.20394 1.16985 0.80279 0.88165 0.76478 1.90981 1.80216 1.17620 1.45311 1.42407 1.03154 1.08101 1.74052 1.20077 0.86375 0.87138 0.98518 1.78886 0.97975 1.04999 1.29018 1.48066 1.03213 1.10428 1.56903 1.21758 0.91395 0.83660 0.96635 1.17874 0.86313 0.94715 1.01151 1.22156 0.97552 0.96293 1.01421 1.22773 0.89364 0.98298 0.94447 1.67699 1.40925 0.99310 1.10068 1.22919 0.93001 0.94906 0.94283 1.22340 0.94014 1.00030 0.97742 1.70253 1.02893 1.25685 1.27839 1.83082 1.03543 0.98031 1.69240 1.24558 0.98165 1.01262 1.10974 1.24428 0.92517 0.94783 1.03551 1.86546 1.27725 1.89921 1.29085 0.86233 0.78748 0.81238 0.81580 1.15405 1.15044 1.16120 0.90927 0.89423 0.91772 0.82375 0.73820 0.70563 0.84452 0.81647 0.81521 0.82906 0.85278 0.77304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.13 8.67 36.01 0.31 0.44 16 2 C -0.09 0.02 5.75 -106.46 -0.61 -0.60 16 3 C -0.03 -0.04 9.80 -40.43 -0.40 -0.43 16 4 C -0.26 -0.39 6.45 -36.79 -0.24 -0.63 16 5 C 0.60 2.26 7.75 -12.92 -0.10 2.16 16 6 O -0.47 -3.41 15.51 5.18 0.08 -3.33 16 7 N -0.62 -1.59 5.43 -14.11 -0.08 -1.66 16 8 C 0.45 1.97 8.81 -321.22 -2.83 -0.86 16 9 N -0.27 -1.42 10.95 29.98 0.33 -1.09 16 10 N -0.47 -0.61 7.35 32.24 0.24 -0.38 16 11 C 0.34 0.52 7.85 -155.49 -1.22 -0.70 16 12 C 0.01 0.00 5.91 -104.65 -0.62 -0.62 16 13 C -0.15 0.32 9.79 -39.05 -0.38 -0.06 16 14 C 0.11 -0.14 11.17 -17.61 -0.20 -0.34 16 15 N -0.47 -0.32 10.34 -13.34 -0.14 -0.45 16 16 C 0.11 -0.09 11.17 -17.61 -0.20 -0.28 16 17 C -0.12 0.09 9.79 -39.05 -0.38 -0.29 16 18 N -0.53 -1.71 10.95 -11.61 -0.13 -1.83 16 19 S 0.19 -0.15 19.79 -107.50 -2.13 -2.28 16 20 C -0.23 0.19 5.53 -35.85 -0.20 0.00 16 21 C -0.04 0.09 2.76 36.01 0.10 0.19 16 22 O -0.53 1.05 9.88 -35.23 -0.35 0.71 16 23 Si 0.90 -1.85 26.60 -169.99 -4.52 -6.37 16 24 H -0.23 0.45 7.10 56.52 0.40 0.85 16 25 H -0.23 0.21 7.11 56.52 0.40 0.61 16 26 H -0.24 0.33 7.11 56.52 0.40 0.73 16 27 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 28 H 0.09 -0.08 6.44 -51.93 -0.33 -0.42 16 29 H 0.06 -0.09 8.13 -51.93 -0.42 -0.51 16 30 H 0.16 0.13 8.06 -52.49 -0.42 -0.30 16 31 H 0.42 -0.10 7.94 -40.82 -0.32 -0.42 16 32 H 0.45 -1.03 8.22 -182.35 -1.50 -2.53 16 33 H 0.14 -0.69 7.33 -52.48 -0.38 -1.07 16 34 H 0.17 -0.64 8.06 -52.48 -0.42 -1.06 16 35 H 0.17 -0.55 8.06 -52.49 -0.42 -0.97 16 36 H 0.15 -0.25 7.94 -52.49 -0.42 -0.67 16 37 H 0.13 -0.40 7.96 -51.93 -0.41 -0.81 16 38 H 0.38 -1.78 8.67 45.56 0.40 -1.38 16 LS Contribution 344.26 15.07 5.19 5.19 Total: 0.00 -9.72 344.26 -12.35 -22.07 By element: Atomic # 1 Polarization: -4.65 SS G_CDS: -3.89 Total: -8.53 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -6.96 Total: -2.03 kcal Atomic # 7 Polarization: -5.64 SS G_CDS: 0.22 Total: -5.42 kcal Atomic # 8 Polarization: -2.35 SS G_CDS: -0.27 Total: -2.62 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: -4.52 Total: -6.37 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.13 Total: -2.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -9.72 -12.35 -22.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442715352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.620 kcal (2) G-P(sol) polarization free energy of solvation -9.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds