Wall clock time and date at job start Mon Mar 23 2020 11:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37423 * 122.44496 * 2 1 4 4 C 1.36712 * 113.29185 * 179.72904 * 3 2 1 5 5 C 1.46537 * 125.45788 * 180.24708 * 4 3 2 6 6 O 1.21712 * 119.99901 * 0.02562 * 5 4 3 7 7 N 1.34767 * 119.99791 * 179.97438 * 5 4 3 8 8 C 1.39759 * 120.00067 * 180.02562 * 7 5 4 9 9 N 1.31316 * 125.47614 * 359.69125 * 8 7 5 10 10 N 1.40437 * 106.93478 * 179.85777 * 9 8 7 11 11 C 1.35192 * 106.35641 * 0.40753 * 10 9 8 12 12 C 1.48005 * 126.02911 * 179.77659 * 11 10 9 13 13 C 1.39903 * 120.92440 * 359.72272 * 12 11 10 14 14 C 1.37977 * 119.00460 * 179.70967 * 13 12 11 15 15 N 1.31913 * 120.89917 * 0.57177 * 14 13 12 16 16 C 1.31919 * 122.04131 * 359.72107 * 15 14 13 17 17 C 1.37987 * 120.89368 * 359.97166 * 16 15 14 18 18 N 1.31765 * 107.93408 * 359.75058 * 11 10 9 19 19 S 1.75827 * 109.07811 * 0.24628 * 4 3 2 20 20 C 1.33850 * 122.44609 * 180.20387 * 2 1 3 21 21 C 1.50703 * 124.52020 * 0.02562 * 20 2 1 22 22 O 1.42889 * 109.47435 * 30.26129 * 21 20 2 23 23 Si 1.86306 * 109.46701 * 150.26129 * 21 20 2 24 24 H 1.48498 * 109.47329 * 59.99824 * 23 21 20 25 25 H 1.48500 * 109.46901 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47084 * 299.99552 * 23 21 20 27 27 H 1.09004 * 109.46758 * 90.02540 * 1 2 3 28 28 H 1.08997 * 109.47151 * 210.02207 * 1 2 3 29 29 H 1.09001 * 109.47240 * 330.02971 * 1 2 3 30 30 H 1.08002 * 123.35740 * 0.02562 * 3 2 1 31 31 H 0.97006 * 120.00629 * 0.02562 * 7 5 4 32 32 H 0.96992 * 126.82482 * 180.13728 * 10 9 8 33 33 H 1.08004 * 120.49498 * 359.97438 * 13 12 11 34 34 H 1.08006 * 119.55368 * 180.26798 * 14 13 12 35 35 H 1.07997 * 119.55512 * 180.02562 * 16 15 14 36 36 H 1.07999 * 120.50025 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.47178 * 270.25509 * 21 20 2 38 38 H 0.96698 * 114.00482 * 59.99458 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2443 1.1597 0.0000 4 6 3.5940 0.9423 0.0059 5 6 4.6231 1.9854 0.0125 6 8 4.3001 3.1589 0.0135 7 7 5.9272 1.6454 0.0186 8 6 6.9087 2.6403 0.0254 9 7 6.6827 3.9339 0.0209 10 7 7.9357 4.5681 0.0342 11 6 8.8612 3.5826 0.0370 12 6 10.3296 3.7675 0.0452 13 6 10.8931 5.0480 0.0452 14 6 12.2670 5.1744 0.0591 15 7 13.0453 4.1093 0.0611 16 6 12.5553 2.8844 0.0553 17 6 11.1928 2.6665 0.0476 18 7 8.2251 2.4287 0.0317 19 16 3.8971 -0.7897 0.0044 20 6 2.2252 -1.1295 -0.0040 21 6 1.6355 -2.5164 -0.0095 22 8 0.3786 -2.4970 -0.6888 23 14 2.7965 -3.6813 -0.8848 24 1 4.1028 -3.7015 -0.1789 25 1 2.2152 -5.0478 -0.8908 26 1 2.9965 -3.2229 -2.2831 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 1.8016 2.1448 0.0004 31 1 6.1847 0.7102 0.0182 32 1 8.1038 5.5233 0.0365 33 1 10.2621 5.9245 0.0387 34 1 12.7114 6.1587 0.0636 35 1 13.2297 2.0409 0.0576 36 1 10.7985 1.6610 0.0434 37 1 1.4887 -2.8529 1.0168 38 1 0.4335 -2.2066 -1.6095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442715352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:03 Heat of formation + Delta-G solvation = 100.499639 kcal Electronic energy + Delta-G solvation = -25785.315334 eV Core-core repulsion = 21837.454535 eV Total energy + Delta-G solvation = -3947.860800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.081 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.57497 -41.30674 -40.91291 -39.90221 -37.36869 -36.53162 -34.57903 -33.70554 -32.36405 -32.19877 -31.06210 -30.22065 -27.12363 -25.97031 -24.97844 -24.48842 -23.37789 -22.30717 -21.68335 -20.39792 -19.95847 -19.47593 -18.31223 -17.78034 -17.45752 -17.41844 -17.17537 -16.95436 -16.71797 -16.45299 -16.18126 -16.07303 -15.65558 -14.98582 -14.93838 -14.89048 -14.67513 -14.54156 -14.10764 -13.56456 -13.49601 -13.16687 -13.06033 -12.82262 -12.69747 -12.49066 -12.29825 -12.11893 -11.87704 -11.81561 -11.66291 -11.43487 -10.81669 -10.68089 -10.63057 -10.24121 -10.08771 -9.76492 -9.47855 -0.83868 -0.64155 0.07578 0.14899 0.56737 0.59365 0.87255 0.98441 1.18023 1.40302 1.45278 1.45821 1.54639 1.89938 2.02493 2.72474 2.77577 3.08036 3.34810 3.43967 3.50382 3.64067 3.83517 3.86971 4.00039 4.03720 4.06924 4.23464 4.51420 4.53804 4.58709 4.65464 4.72594 4.78954 4.81676 4.92684 4.98933 5.00189 5.12823 5.35305 5.49307 5.55318 5.58165 5.89028 6.53615 6.61169 6.75731 6.90046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.101 4.101 3 C -0.037 4.037 4 C -0.287 4.287 5 C 0.596 3.404 6 O -0.515 6.515 7 N -0.615 5.615 8 C 0.436 3.564 9 N -0.312 5.312 10 N -0.455 5.455 11 C 0.350 3.650 12 C -0.005 4.005 13 C -0.141 4.141 14 C 0.100 3.900 15 N -0.498 5.498 16 C 0.098 3.902 17 C -0.121 4.121 18 N -0.547 5.547 19 S 0.227 5.773 20 C -0.224 4.224 21 C -0.037 4.037 22 O -0.535 6.535 23 Si 0.925 3.075 24 H -0.229 1.229 25 H -0.243 1.243 26 H -0.248 1.248 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.153 0.847 31 H 0.434 0.566 32 H 0.461 0.539 33 H 0.167 0.833 34 H 0.189 0.811 35 H 0.186 0.814 36 H 0.157 0.843 37 H 0.142 0.858 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.534 -3.064 -0.549 3.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.071 4.071 4 C -0.407 4.407 5 C 0.383 3.617 6 O -0.388 6.388 7 N -0.270 5.270 8 C 0.066 3.934 9 N -0.149 5.149 10 N -0.177 5.177 11 C 0.074 3.926 12 C -0.016 4.016 13 C -0.163 4.163 14 C -0.056 4.056 15 N -0.207 5.207 16 C -0.058 4.058 17 C -0.143 4.143 18 N -0.281 5.281 19 S 0.496 5.504 20 C -0.344 4.344 21 C -0.149 4.149 22 O -0.342 6.342 23 Si 0.745 3.255 24 H -0.153 1.153 25 H -0.166 1.166 26 H -0.171 1.171 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.171 0.829 31 H 0.275 0.725 32 H 0.311 0.689 33 H 0.184 0.816 34 H 0.206 0.794 35 H 0.203 0.797 36 H 0.175 0.825 37 H 0.160 0.840 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.181 -3.903 -0.407 5.051 hybrid contribution -1.955 1.593 -0.267 2.536 sum 1.225 -2.309 -0.674 2.700 Atomic orbital electron populations 1.20649 0.87354 1.03489 1.03558 1.18776 0.99255 0.89929 1.03399 1.20868 0.90582 1.00852 0.94824 1.24021 0.96952 0.97595 1.22171 1.17309 0.80762 0.88110 0.75469 1.90944 1.80884 1.19396 1.47559 1.42376 1.02720 1.08474 1.73395 1.20333 0.87031 0.87330 0.98668 1.78787 1.00033 1.05775 1.30311 1.47943 1.02151 1.11161 1.56492 1.22074 0.92052 0.83287 0.95226 1.17988 0.85193 0.95831 1.02566 1.22445 0.97701 0.96543 0.99629 1.23217 0.89643 0.98858 0.93924 1.67715 1.42009 1.00177 1.10827 1.23215 0.93246 0.95200 0.94102 1.22437 0.94122 1.00242 0.97520 1.70259 1.02399 1.26633 1.28786 1.82929 1.03333 0.95764 1.68356 1.24847 0.98241 1.01843 1.09465 1.24493 0.92470 0.93616 1.04341 1.86527 1.27681 1.89899 1.30135 0.85933 0.78491 0.80166 0.80916 1.15278 1.16605 1.17067 0.89954 0.89507 0.91854 0.82905 0.72527 0.68890 0.81590 0.79376 0.79741 0.82519 0.84017 0.75972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.27 8.67 71.24 0.62 0.89 16 2 C -0.10 0.03 5.75 -21.05 -0.12 -0.09 16 3 C -0.04 -0.11 9.80 21.72 0.21 0.10 16 4 C -0.29 -1.16 6.45 24.08 0.16 -1.00 16 5 C 0.60 5.60 7.75 86.41 0.67 6.27 16 6 O -0.51 -8.74 15.51 -4.39 -0.07 -8.81 16 7 N -0.62 -4.03 5.43 -316.76 -1.72 -5.74 16 8 C 0.44 4.46 8.81 260.93 2.30 6.76 16 9 N -0.31 -3.73 10.95 -59.05 -0.65 -4.38 16 10 N -0.46 -1.46 7.35 -51.90 -0.38 -1.85 16 11 C 0.35 1.21 7.85 136.89 1.07 2.28 16 12 C 0.00 0.00 5.91 -19.88 -0.12 -0.11 16 13 C -0.14 0.73 9.79 22.61 0.22 0.95 16 14 C 0.10 -0.36 11.17 84.62 0.95 0.59 16 15 N -0.50 -0.49 10.34 -196.13 -2.03 -2.52 16 16 C 0.10 -0.17 11.17 84.62 0.95 0.77 16 17 C -0.12 0.18 9.79 22.61 0.22 0.40 16 18 N -0.55 -4.00 10.95 -190.63 -2.09 -6.08 16 19 S 0.23 -0.40 19.79 -56.49 -1.12 -1.52 16 20 C -0.22 0.50 5.53 24.69 0.14 0.64 16 21 C -0.04 0.19 2.76 71.24 0.20 0.39 16 22 O -0.54 2.67 9.88 -148.98 -1.47 1.20 16 23 Si 0.92 -4.42 26.60 68.60 1.82 -2.60 16 24 H -0.23 1.14 7.10 99.48 0.71 1.85 16 25 H -0.24 0.52 7.11 99.48 0.71 1.22 16 26 H -0.25 0.81 7.11 99.48 0.71 1.51 16 27 H 0.08 -0.42 8.14 -2.39 -0.02 -0.43 16 28 H 0.09 -0.22 6.44 -2.39 -0.02 -0.23 16 29 H 0.06 -0.17 8.13 -2.39 -0.02 -0.19 16 30 H 0.15 0.54 8.06 -2.91 -0.02 0.51 16 31 H 0.43 0.24 7.94 -92.70 -0.74 -0.50 16 32 H 0.46 -2.09 8.22 -213.11 -1.75 -3.84 16 33 H 0.17 -1.96 7.33 -2.91 -0.02 -1.98 16 34 H 0.19 -1.73 8.06 -2.91 -0.02 -1.75 16 35 H 0.19 -1.25 8.06 -2.91 -0.02 -1.27 16 36 H 0.16 -0.45 7.94 -2.91 -0.02 -0.47 16 37 H 0.14 -1.07 7.96 -2.39 -0.02 -1.09 16 38 H 0.39 -4.04 8.67 -74.06 -0.64 -4.68 16 Total: 0.00 -23.36 344.26 -1.44 -24.80 By element: Atomic # 1 Polarization: -10.15 SS G_CDS: -1.20 Total: -11.34 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 7.46 Total: 18.84 kcal Atomic # 7 Polarization: -13.71 SS G_CDS: -6.86 Total: -20.58 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -1.54 Total: -7.61 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: 1.82 Total: -2.60 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -1.12 Total: -1.52 kcal Total: -23.36 -1.44 -24.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442715352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.303 kcal (2) G-P(sol) polarization free energy of solvation -23.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds