Wall clock time and date at job start Mon Mar 23 2020 11:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37430 * 122.44387 * 2 1 4 4 C 1.36686 * 113.29569 * 180.20736 * 3 2 1 5 5 C 1.46577 * 125.45686 * 179.84001 * 4 3 2 6 6 O 1.21703 * 120.00055 * 359.71886 * 5 4 3 7 7 N 1.34774 * 119.99614 * 179.71331 * 5 4 3 8 8 N 1.40103 * 119.99816 * 179.97438 * 7 5 4 9 9 C 1.34777 * 120.00268 * 180.02562 * 8 7 5 10 10 O 1.21547 * 119.99725 * 359.97438 * 9 8 7 11 11 C 1.47912 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.39624 * 119.99148 * 179.97438 * 11 9 8 13 13 C 1.37725 * 120.00555 * 180.02562 * 12 11 9 14 14 C 1.39682 * 119.99308 * 359.97438 * 13 12 11 15 15 C 1.43205 * 120.00293 * 180.02562 * 14 13 12 16 16 N 9.85021 * 171.56247 * 180.02562 * 5 1 2 17 17 C 1.39668 * 119.98868 * 0.28209 * 14 13 12 18 18 C 1.37731 * 119.99196 * 359.45699 * 17 14 13 19 19 S 1.75829 * 109.08176 * 359.57378 * 4 3 2 20 20 C 1.33852 * 122.44876 * 179.73575 * 2 1 3 21 21 C 1.50691 * 124.52391 * 359.97438 * 20 2 1 22 22 O 1.42898 * 109.46997 * 77.74961 * 21 20 2 23 23 Si 1.86302 * 109.47284 * 197.75047 * 21 20 2 24 24 H 1.48495 * 109.46803 * 59.99879 * 23 21 20 25 25 H 1.48496 * 109.47156 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46822 * 300.00214 * 23 21 20 27 27 H 1.09003 * 109.46923 * 265.02009 * 1 2 3 28 28 H 1.09001 * 109.47236 * 25.02118 * 1 2 3 29 29 H 1.09003 * 109.47015 * 145.02211 * 1 2 3 30 30 H 1.07997 * 123.35730 * 0.02694 * 3 2 1 31 31 H 0.96997 * 120.00246 * 0.02562 * 7 5 4 32 32 H 0.97005 * 119.99625 * 0.02562 * 8 7 5 33 33 H 1.07999 * 119.99957 * 359.97404 * 12 11 9 34 34 H 1.08000 * 120.00762 * 179.97438 * 13 12 11 35 35 H 1.08001 * 120.00622 * 179.72489 * 17 14 13 36 36 H 1.08002 * 119.99361 * 180.23714 * 18 17 14 37 37 H 1.09006 * 109.47314 * 317.75151 * 21 20 2 38 38 H 0.96699 * 114.00174 * 60.00593 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2443 1.1598 0.0000 4 6 3.5938 0.9425 -0.0045 5 6 4.6231 1.9861 -0.0090 6 8 4.3000 3.1594 -0.0140 7 7 5.9272 1.6462 -0.0074 8 7 6.9111 2.6436 -0.0122 9 6 8.2153 2.3038 -0.0112 10 8 8.5379 1.1319 -0.0056 11 6 9.2539 3.3569 -0.0157 12 6 10.6050 3.0046 -0.0141 13 6 11.5724 3.9850 -0.0177 14 6 11.2017 5.3317 -0.0236 15 6 12.2073 6.3512 -0.0279 16 7 13.0050 7.1600 -0.0318 17 6 9.8501 5.6838 -0.0198 18 6 8.8832 4.7030 -0.0216 19 16 3.8971 -0.7894 0.0035 20 6 2.2252 -1.1295 0.0052 21 6 1.6358 -2.5163 0.0122 22 8 1.1859 -2.8492 -1.3027 23 14 2.9326 -3.7397 0.5531 24 1 3.4001 -3.3936 1.9194 25 1 2.3518 -5.1064 0.5594 26 1 4.0797 -3.6940 -0.3890 27 1 -0.3633 -0.0892 1.0238 28 1 -0.3634 0.9312 -0.4347 29 1 -0.3633 -0.8421 -0.5891 30 1 1.8016 2.1449 0.0004 31 1 6.1847 0.7110 -0.0038 32 1 6.6535 3.5788 -0.0163 33 1 10.8916 1.9634 -0.0091 34 1 12.6174 3.7125 -0.0161 35 1 9.5632 6.7250 -0.0198 36 1 7.8380 4.9752 -0.0225 37 1 0.7937 -2.5498 0.7036 38 1 1.8841 -2.8394 -1.9716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464591317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:07 Heat of formation + Delta-G solvation = 17.108527 kcal Electronic energy + Delta-G solvation = -25455.055498 eV Core-core repulsion = 21471.285837 eV Total energy + Delta-G solvation = -3983.769661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92664 -40.92619 -40.04559 -39.52444 -37.62310 -37.49007 -36.62487 -33.88230 -32.76658 -32.48462 -31.47417 -30.08910 -27.12680 -25.99180 -24.56260 -24.00084 -22.90609 -22.24652 -20.45336 -20.28850 -20.02925 -19.14357 -18.56896 -17.71078 -17.22230 -16.95179 -16.88751 -16.49330 -16.24435 -16.19369 -15.86655 -15.80416 -15.50501 -15.15411 -14.97694 -14.94124 -14.68052 -14.63849 -14.41103 -13.93412 -13.63181 -13.53436 -13.42123 -13.23821 -13.13116 -12.61600 -12.56474 -12.55102 -12.46413 -12.32488 -11.79171 -11.65484 -11.42566 -10.71897 -10.44638 -10.37361 -10.07866 -9.69910 -9.55297 -0.96898 -0.81217 -0.04091 0.08843 0.37672 0.52992 0.90915 1.00395 1.18451 1.22531 1.34932 1.52898 1.74675 1.85557 2.03263 2.54172 2.62196 2.63665 3.14889 3.20227 3.39918 3.46431 3.50133 3.61014 3.82995 3.95980 4.02918 4.17294 4.25108 4.30781 4.43995 4.58925 4.61637 4.67553 4.70908 4.83780 4.88421 4.92481 5.19996 5.25083 5.27180 5.31359 5.42452 6.13596 6.29510 6.32389 6.50099 6.97930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.084 4.084 3 C -0.034 4.034 4 C -0.259 4.259 5 C 0.599 3.401 6 O -0.522 6.522 7 N -0.520 5.520 8 N -0.513 5.513 9 C 0.561 3.439 10 O -0.525 6.525 11 C -0.101 4.101 12 C -0.053 4.053 13 C -0.075 4.075 14 C 0.007 3.993 15 C 0.244 3.756 16 N -0.396 5.396 17 C -0.074 4.074 18 C -0.085 4.085 19 S 0.188 5.812 20 C -0.229 4.229 21 C -0.040 4.040 22 O -0.529 6.529 23 Si 0.889 3.111 24 H -0.234 1.234 25 H -0.224 1.224 26 H -0.230 1.230 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.432 0.568 32 H 0.435 0.565 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 -3.165 0.201 4.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.097 4.097 3 C -0.068 4.068 4 C -0.380 4.380 5 C 0.385 3.615 6 O -0.398 6.398 7 N -0.268 5.268 8 N -0.263 5.263 9 C 0.348 3.652 10 O -0.401 6.401 11 C -0.107 4.107 12 C -0.072 4.072 13 C -0.096 4.096 14 C 0.003 3.997 15 C -0.072 4.072 16 N -0.071 5.071 17 C -0.095 4.095 18 C -0.104 4.104 19 S 0.458 5.542 20 C -0.349 4.349 21 C -0.153 4.153 22 O -0.334 6.334 23 Si 0.708 3.292 24 H -0.156 1.156 25 H -0.146 1.146 26 H -0.153 1.153 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.177 0.823 31 H 0.274 0.726 32 H 0.279 0.721 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.436 -3.485 0.775 3.596 hybrid contribution -1.407 1.045 -0.373 1.792 sum -1.843 -2.439 0.403 3.083 Atomic orbital electron populations 1.20633 0.88531 1.03894 1.02966 1.18736 0.98440 0.90501 1.01998 1.20741 0.90379 1.00425 0.95257 1.24030 0.97190 0.96501 1.20295 1.16913 0.79666 0.88247 0.76636 1.90886 1.80946 1.17784 1.50212 1.44638 0.99992 1.05298 1.76880 1.44714 0.99989 1.05377 1.76198 1.18379 0.80466 0.89386 0.76954 1.90850 1.81098 1.18589 1.49517 1.19742 0.93458 0.92443 1.05023 1.21216 0.90217 1.01089 0.94646 1.21251 1.00916 0.90215 0.97200 1.16206 0.89865 0.89778 1.03823 1.25619 0.93534 0.93489 0.94561 1.81340 1.09181 1.09275 1.07309 1.21165 0.90369 1.00768 0.97180 1.21274 1.00249 0.91230 0.97657 1.83195 1.04066 0.98249 1.68738 1.24460 0.97764 1.01315 1.11320 1.24409 1.07514 0.93565 0.89849 1.86553 1.38885 1.91230 1.16717 0.86338 0.78193 0.81648 0.82994 1.15649 1.14570 1.15268 0.90719 0.91006 0.90061 0.82257 0.72553 0.72102 0.83035 0.83646 0.83732 0.84302 0.85268 0.77412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.20 9.61 36.01 0.35 0.55 16 2 C -0.08 0.06 5.78 -106.45 -0.62 -0.55 16 3 C -0.03 0.00 9.78 -40.44 -0.40 -0.39 16 4 C -0.26 -0.08 6.45 -36.78 -0.24 -0.31 16 5 C 0.60 0.85 7.90 -12.90 -0.10 0.75 16 6 O -0.52 -1.97 16.68 5.19 0.09 -1.88 16 7 N -0.52 -0.16 6.26 30.24 0.19 0.03 16 8 N -0.51 0.30 6.21 30.54 0.19 0.49 16 9 C 0.56 -0.01 7.89 -12.30 -0.10 -0.11 16 10 O -0.53 -1.49 16.17 5.32 0.09 -1.41 16 11 C -0.10 0.21 5.88 -104.90 -0.62 -0.40 16 12 C -0.05 0.13 9.58 -39.25 -0.38 -0.24 16 13 C -0.08 0.23 9.73 -39.23 -0.38 -0.15 16 14 C 0.01 -0.02 5.73 -106.90 -0.61 -0.63 16 15 C 0.24 0.09 15.32 -22.47 -0.34 -0.25 16 16 N -0.40 -1.39 18.54 41.84 0.78 -0.62 16 17 C -0.07 0.27 9.73 -39.23 -0.38 -0.11 16 18 C -0.09 0.33 9.52 -39.25 -0.37 -0.05 16 19 S 0.19 -0.23 19.42 -107.50 -2.09 -2.31 16 20 C -0.23 0.27 5.46 -35.85 -0.20 0.07 16 21 C -0.04 0.09 2.13 36.00 0.08 0.16 16 22 O -0.53 0.84 12.60 -35.23 -0.44 0.40 16 23 Si 0.89 -1.71 26.31 -169.99 -4.47 -6.18 16 24 H -0.23 0.26 7.11 56.52 0.40 0.67 16 25 H -0.22 0.19 7.11 56.52 0.40 0.60 16 26 H -0.23 0.46 7.11 56.52 0.40 0.86 16 27 H 0.07 -0.20 8.14 -51.93 -0.42 -0.63 16 28 H 0.07 -0.18 8.10 -51.93 -0.42 -0.60 16 29 H 0.08 -0.13 7.37 -51.93 -0.38 -0.51 16 30 H 0.16 -0.10 8.06 -52.49 -0.42 -0.53 16 31 H 0.43 -0.16 7.11 -182.60 -1.30 -1.46 16 32 H 0.43 -0.95 6.02 -182.59 -1.10 -2.05 16 33 H 0.15 -0.42 7.64 -52.49 -0.40 -0.82 16 34 H 0.15 -0.67 8.06 -52.49 -0.42 -1.09 16 35 H 0.14 -0.75 8.06 -52.49 -0.42 -1.17 16 36 H 0.14 -0.83 6.39 -52.49 -0.34 -1.16 16 37 H 0.13 -0.40 7.73 -51.93 -0.40 -0.80 16 38 H 0.38 -1.73 8.70 45.56 0.40 -1.33 16 LS Contribution 355.37 15.07 5.36 5.36 Total: 0.00 -8.76 355.37 -9.06 -17.81 By element: Atomic # 1 Polarization: -5.59 SS G_CDS: -4.43 Total: -10.02 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -4.31 Total: -1.67 kcal Atomic # 7 Polarization: -1.25 SS G_CDS: 1.15 Total: -0.09 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: -0.27 Total: -2.89 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: -4.47 Total: -6.18 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.09 Total: -2.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -8.76 -9.06 -17.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464591317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.923 kcal (2) G-P(sol) polarization free energy of solvation -8.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds