Wall clock time and date at job start Mon Mar 23 2020 11:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37430 * 122.44387 * 2 1 4 4 C 1.36686 * 113.29569 * 180.20736 * 3 2 1 5 5 C 1.46577 * 125.45686 * 179.84001 * 4 3 2 6 6 O 1.21703 * 120.00055 * 359.71886 * 5 4 3 7 7 N 1.34774 * 119.99614 * 179.71331 * 5 4 3 8 8 N 1.40103 * 119.99816 * 179.97438 * 7 5 4 9 9 C 1.34777 * 120.00268 * 180.02562 * 8 7 5 10 10 O 1.21547 * 119.99725 * 359.97438 * 9 8 7 11 11 C 1.47912 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.39624 * 119.99148 * 179.97438 * 11 9 8 13 13 C 1.37725 * 120.00555 * 180.02562 * 12 11 9 14 14 C 1.39682 * 119.99308 * 359.97438 * 13 12 11 15 15 C 1.43205 * 120.00293 * 180.02562 * 14 13 12 16 16 N 9.85021 * 171.56247 * 180.02562 * 5 1 2 17 17 C 1.39668 * 119.98868 * 0.28209 * 14 13 12 18 18 C 1.37731 * 119.99196 * 359.45699 * 17 14 13 19 19 S 1.75829 * 109.08176 * 359.57378 * 4 3 2 20 20 C 1.33852 * 122.44876 * 179.73575 * 2 1 3 21 21 C 1.50691 * 124.52391 * 359.97438 * 20 2 1 22 22 O 1.42898 * 109.46997 * 77.74961 * 21 20 2 23 23 Si 1.86302 * 109.47284 * 197.75047 * 21 20 2 24 24 H 1.48495 * 109.46803 * 59.99879 * 23 21 20 25 25 H 1.48496 * 109.47156 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46822 * 300.00214 * 23 21 20 27 27 H 1.09003 * 109.46923 * 265.02009 * 1 2 3 28 28 H 1.09001 * 109.47236 * 25.02118 * 1 2 3 29 29 H 1.09003 * 109.47015 * 145.02211 * 1 2 3 30 30 H 1.07997 * 123.35730 * 0.02694 * 3 2 1 31 31 H 0.96997 * 120.00246 * 0.02562 * 7 5 4 32 32 H 0.97005 * 119.99625 * 0.02562 * 8 7 5 33 33 H 1.07999 * 119.99957 * 359.97404 * 12 11 9 34 34 H 1.08000 * 120.00762 * 179.97438 * 13 12 11 35 35 H 1.08001 * 120.00622 * 179.72489 * 17 14 13 36 36 H 1.08002 * 119.99361 * 180.23714 * 18 17 14 37 37 H 1.09006 * 109.47314 * 317.75151 * 21 20 2 38 38 H 0.96699 * 114.00174 * 60.00593 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2443 1.1598 0.0000 4 6 3.5938 0.9425 -0.0045 5 6 4.6231 1.9861 -0.0090 6 8 4.3000 3.1594 -0.0140 7 7 5.9272 1.6462 -0.0074 8 7 6.9111 2.6436 -0.0122 9 6 8.2153 2.3038 -0.0112 10 8 8.5379 1.1319 -0.0056 11 6 9.2539 3.3569 -0.0157 12 6 10.6050 3.0046 -0.0141 13 6 11.5724 3.9850 -0.0177 14 6 11.2017 5.3317 -0.0236 15 6 12.2073 6.3512 -0.0279 16 7 13.0050 7.1600 -0.0318 17 6 9.8501 5.6838 -0.0198 18 6 8.8832 4.7030 -0.0216 19 16 3.8971 -0.7894 0.0035 20 6 2.2252 -1.1295 0.0052 21 6 1.6358 -2.5163 0.0122 22 8 1.1859 -2.8492 -1.3027 23 14 2.9326 -3.7397 0.5531 24 1 3.4001 -3.3936 1.9194 25 1 2.3518 -5.1064 0.5594 26 1 4.0797 -3.6940 -0.3890 27 1 -0.3633 -0.0892 1.0238 28 1 -0.3634 0.9312 -0.4347 29 1 -0.3633 -0.8421 -0.5891 30 1 1.8016 2.1449 0.0004 31 1 6.1847 0.7110 -0.0038 32 1 6.6535 3.5788 -0.0163 33 1 10.8916 1.9634 -0.0091 34 1 12.6174 3.7125 -0.0161 35 1 9.5632 6.7250 -0.0198 36 1 7.8380 4.9752 -0.0225 37 1 0.7937 -2.5498 0.7036 38 1 1.8841 -2.8394 -1.9716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464591317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 23 2020 11:53:06 Heat of formation + Delta-G solvation = 17.209213 kcal Electronic energy + Delta-G solvation = -25455.051132 eV Core-core repulsion = 21471.285837 eV Total energy + Delta-G solvation = -3983.765295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.074 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91769 -40.89194 -39.94609 -39.50521 -37.58102 -37.48017 -36.69598 -33.86190 -32.67663 -32.26123 -31.39771 -29.94633 -27.06059 -25.88505 -24.46803 -23.77157 -22.92127 -22.20150 -20.36731 -20.12503 -19.99587 -19.14631 -18.50998 -17.59399 -17.18564 -16.96835 -16.81584 -16.37516 -16.15240 -16.05270 -15.88513 -15.71629 -15.46846 -15.16555 -14.85176 -14.77022 -14.54946 -14.52154 -14.29420 -13.99967 -13.51834 -13.44369 -13.33092 -13.11479 -13.02357 -12.68480 -12.45848 -12.42477 -12.24167 -12.22115 -11.78505 -11.63743 -11.47980 -10.56728 -10.26820 -10.17176 -10.04626 -9.68154 -9.48286 -0.85125 -0.75234 0.15399 0.22597 0.40468 0.60384 1.02537 1.05701 1.24977 1.35650 1.46769 1.50961 1.84698 1.87557 2.04570 2.58471 2.69182 2.76978 3.21809 3.39754 3.58374 3.66182 3.70445 3.78721 4.04323 4.07279 4.25013 4.27461 4.46662 4.52744 4.60356 4.70176 4.87248 4.88935 4.93330 4.99771 5.05196 5.16422 5.21743 5.32127 5.40910 5.45331 5.57306 6.14812 6.32429 6.48460 6.60325 6.96324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.092 4.092 3 C -0.036 4.036 4 C -0.276 4.276 5 C 0.600 3.400 6 O -0.550 6.550 7 N -0.519 5.519 8 N -0.509 5.509 9 C 0.563 3.437 10 O -0.558 6.558 11 C -0.107 4.107 12 C -0.058 4.058 13 C -0.068 4.068 14 C -0.003 4.003 15 C 0.274 3.726 16 N -0.457 5.457 17 C -0.066 4.066 18 C -0.077 4.077 19 S 0.205 5.795 20 C -0.228 4.228 21 C -0.035 4.035 22 O -0.540 6.540 23 Si 0.907 3.093 24 H -0.245 1.245 25 H -0.238 1.238 26 H -0.228 1.228 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.434 0.566 32 H 0.442 0.558 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.140 0.860 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 -3.356 0.138 5.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C -0.071 4.071 4 C -0.398 4.398 5 C 0.388 3.612 6 O -0.429 6.429 7 N -0.267 5.267 8 N -0.259 5.259 9 C 0.351 3.649 10 O -0.435 6.435 11 C -0.112 4.112 12 C -0.077 4.077 13 C -0.089 4.089 14 C -0.007 4.007 15 C -0.041 4.041 16 N -0.133 5.133 17 C -0.087 4.087 18 C -0.096 4.096 19 S 0.475 5.525 20 C -0.347 4.347 21 C -0.148 4.148 22 O -0.347 6.347 23 Si 0.728 3.272 24 H -0.168 1.168 25 H -0.161 1.161 26 H -0.151 1.151 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.179 0.821 31 H 0.278 0.722 32 H 0.288 0.712 33 H 0.169 0.831 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.158 0.842 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.156 -3.674 0.702 3.915 hybrid contribution -1.217 1.026 -0.356 1.631 sum -2.373 -2.648 0.346 3.573 Atomic orbital electron populations 1.20649 0.87655 1.04023 1.03514 1.18868 0.99122 0.90288 1.02171 1.20869 0.90406 1.00857 0.94965 1.24024 0.97136 0.97142 1.21452 1.17055 0.79983 0.88097 0.76083 1.90860 1.81383 1.18855 1.51784 1.44667 1.00009 1.05732 1.76248 1.44798 0.99755 1.05624 1.75714 1.18702 0.80697 0.89378 0.76077 1.90832 1.81544 1.19991 1.51172 1.19718 0.92978 0.92632 1.05846 1.21254 0.90233 1.01266 0.94929 1.21343 1.01542 0.89665 0.96310 1.16289 0.89860 0.89363 1.05147 1.25914 0.92739 0.92718 0.92727 1.81364 1.11002 1.11176 1.09715 1.21371 0.89611 1.01791 0.95891 1.21461 1.01385 0.90224 0.96490 1.83119 1.04063 0.97037 1.68274 1.24655 0.97781 1.01742 1.10549 1.24413 1.07744 0.92672 0.90013 1.86530 1.39870 1.91142 1.17125 0.86084 0.78072 0.80733 0.82297 1.16808 1.16130 1.15079 0.89863 0.90586 0.90286 0.82142 0.72236 0.71216 0.83076 0.82312 0.81888 0.82088 0.84218 0.76022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.45 9.61 71.24 0.68 1.13 16 2 C -0.09 0.16 5.78 -21.05 -0.12 0.04 16 3 C -0.04 0.00 9.78 21.72 0.21 0.21 16 4 C -0.28 -0.27 6.45 24.08 0.16 -0.11 16 5 C 0.60 2.04 7.90 86.42 0.68 2.72 16 6 O -0.55 -4.47 16.68 -4.36 -0.07 -4.54 16 7 N -0.52 -0.54 6.26 -176.46 -1.10 -1.64 16 8 N -0.51 0.58 6.21 -175.56 -1.09 -0.51 16 9 C 0.56 0.04 7.89 86.81 0.69 0.73 16 10 O -0.56 -3.53 16.17 -3.86 -0.06 -3.59 16 11 C -0.11 0.49 5.88 -20.05 -0.12 0.38 16 12 C -0.06 0.30 9.58 22.48 0.22 0.52 16 13 C -0.07 0.46 9.73 22.50 0.22 0.68 16 14 C 0.00 0.02 5.73 -21.34 -0.12 -0.11 16 15 C 0.27 0.23 15.32 88.33 1.35 1.58 16 16 N -0.46 -3.58 18.54 19.00 0.35 -3.23 16 17 C -0.07 0.57 9.73 22.50 0.22 0.79 16 18 C -0.08 0.69 9.52 22.48 0.21 0.90 16 19 S 0.21 -0.50 19.42 -56.49 -1.10 -1.59 16 20 C -0.23 0.61 5.46 24.68 0.13 0.75 16 21 C -0.04 0.17 2.13 71.23 0.15 0.32 16 22 O -0.54 2.09 12.60 -148.98 -1.88 0.21 16 23 Si 0.91 -3.60 26.31 68.60 1.81 -1.80 16 24 H -0.24 0.53 7.11 99.48 0.71 1.24 16 25 H -0.24 0.35 7.11 99.48 0.71 1.06 16 26 H -0.23 1.00 7.11 99.48 0.71 1.71 16 27 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H 0.08 -0.40 8.10 -2.39 -0.02 -0.42 16 29 H 0.08 -0.30 7.37 -2.39 -0.02 -0.32 16 30 H 0.16 -0.12 8.06 -2.91 -0.02 -0.14 16 31 H 0.43 -0.07 7.11 -213.32 -1.52 -1.59 16 32 H 0.44 -2.08 6.02 -213.31 -1.28 -3.36 16 33 H 0.15 -0.78 7.64 -2.91 -0.02 -0.80 16 34 H 0.16 -1.55 8.06 -2.91 -0.02 -1.57 16 35 H 0.16 -1.99 8.06 -2.91 -0.02 -2.02 16 36 H 0.16 -2.20 6.39 -2.91 -0.02 -2.21 16 37 H 0.14 -0.98 7.73 -2.38 -0.02 -0.99 16 38 H 0.39 -3.81 8.70 -74.06 -0.64 -4.46 16 Total: 0.00 -20.52 355.37 -0.09 -20.61 By element: Atomic # 1 Polarization: -12.92 SS G_CDS: -1.51 Total: -14.43 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.57 Total: 10.52 kcal Atomic # 7 Polarization: -3.54 SS G_CDS: -1.84 Total: -5.38 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -2.01 Total: -7.92 kcal Atomic # 14 Polarization: -3.60 SS G_CDS: 1.81 Total: -1.80 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -1.10 Total: -1.59 kcal Total: -20.52 -0.09 -20.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464591317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.819 kcal (2) G-P(sol) polarization free energy of solvation -20.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds